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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCC1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
61.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
59.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
59.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
54.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
45.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
42.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCC1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
231
Samples
Sample
Description
TPM
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
35.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.7
395
Tumor
0.7
327
Tumor
0.7
533
Tumor
0.7
695
Tumor
0.7
951
Tumor
0.7
425
Tumor
0.7
741
Tumor
0.6
357
Tumor
0.6
967
Tumor
0.6
277
Tumor
0.6
925
Tumor
0.6
513
Tumor
0.6
355
Tumor
0.6
461
Tumor
0.6
713
Tumor
0.5
1021
Tumor
0.5
493
Tumor
0.5
445
Tumor
0.5
865
Tumor
0.5
953
Tumor
0.5
483
Tumor
0.5
697
Tumor
0.4
367
Tumor
0.4
527
Tumor
0.4
573
Tumor
0.4
497
Tumor
0.4
867
Tumor
0.4
661
Tumor
0.4
487
Tumor
0.4
515
Tumor
0.4
431
Tumor
0.4
923
Tumor
0.4
615
Tumor
0.4
443
Tumor
0.3
413
Tumor
0.3
553
Tumor
0.3
391
Tumor
0.3
387
Tumor
0.3
663
Tumor
0.3
112
Tumor
0.3
465
Tumor
0.3
883
Tumor
0.3
313
Tumor
0.3
777
Tumor
0.3
525
Tumor
0.3
685
Tumor
0.3
571
Tumor
0.3
283
Tumor
0.2
727
Tumor
0.2
161
Tumor
0.2
977
Tumor
0.2
185
Tumor
0.2
823
Tumor
0.2
343
Tumor
0.2
125
Tumor
0.2
328
Normal
0.2
227
Tumor
0.2
755
Tumor
0.2
1015
Tumor
0.2
1041
Tumor
0.2
385
Tumor
0.2
231
Tumor
0.2
172
Normal
0.2
881
Tumor
0.1
1013
Tumor
0.1
213
Tumor
0.1
361
Tumor
0.1
466
Normal
0.1
813
Tumor
0.1
492
Normal
0.1
463
Tumor
0.1
858
Normal
0.1
162
Normal
0.1
937
Tumor
0.1
913
Tumor
0.1
427
Tumor
0.1
392
Normal
0.1
473
Tumor
0.1
627
Tumor
0.1
484
Normal
0.1
714
Normal
0.1
635
Tumor
0.1
538
Normal
0.1
535
Tumor
0.1
477
Tumor
0.1
135
Tumor
0.1
423
Tumor
0.1
171
Tumor
0.1
351
Tumor
0.1
433
Tumor
0.1
924
Normal
0.1
785
Tumor
0.1
922
Normal
0.1
557
Tumor
0.1
686
Normal
0.1
331
Tumor
0.1
451
Tumor
0.0
123
Tumor
0.0
383
Tumor
0.0
746
Normal
0.0
394
Normal
0.0
137
Tumor
0.0
1028
Normal
0.0
524
Normal
0.0
857
Tumor
0.0
546
Normal
0.0
534
Normal
0.0
955
Tumor
0.0
365
Tumor
0.0
861
Tumor
0.0
724
Normal
0.0
954
Normal
0.0
648
Normal
0.0
285
Tumor
0.0
375
Tumor
0.0
968
Normal
0.0
975
Tumor
0.0
943
Tumor
0.0
356
Normal
0.0
267
Tumor
0.0
981
Tumor
0.0
1027
Tumor
0.0
414
Normal
0.0
817
Tumor
0.0
452
Normal
0.0
353
Tumor
0.0
342
Normal
0.0
756
Normal
0.0
873
Tumor
0.0
815
Tumor
0.0
488
Normal
0.0
537
Tumor
0.0
957
Tumor
0.0
518
Normal
0.0
716
Normal
0.0
696
Normal
0.0
921
Tumor
0.0
851
Tumor
0.0
567
Tumor
-0.1
223
Tumor
-0.1
498
Normal
-0.1
298
Normal
-0.1
436
Normal
-0.1
138
Normal
-0.1
344
Normal
-0.1
284
Normal
-0.1
814
Normal
-0.1
514
Normal
-0.1
396
Normal
-0.1
944
Normal
-0.1
455
Tumor
-0.1
411
Tumor
-0.1
722
Normal
-0.1
523
Tumor
-0.1
217
Tumor
-0.1
554
Normal
-0.1
195
Tumor
-0.1
516
Normal
-0.1
478
Normal
-0.1
222
Normal
-0.1
435
Tumor
-0.1
141
Tumor
-0.1
1026
Normal
-0.1
966
Normal
-0.1
228
Normal
-0.1
744
Normal
-0.1
388
Normal
-0.1
721
Tumor
-0.1
474
Normal
-0.1
786
Normal
-0.1
526
Normal
-0.1
386
Normal
-0.1
915
Tumor
-0.1
742
Normal
-0.1
482
Normal
-0.1
412
Normal
-0.1
268
Normal
-0.1
818
Normal
-0.1
563
Tumor
-0.1
824
Normal
-0.1
952
Normal
-0.1
128
Normal
-0.1
738
Normal
-0.1
432
Normal
-0.1
416
Normal
-0.1
434
Normal
-0.1
963
Tumor
-0.1
494
Normal
-0.1
314
Normal
-0.1
311
Tumor
-0.1
874
Normal
-0.1
462
Normal
-0.1
145
Tumor
-0.1
877
Tumor
-0.1
491
Tumor
-0.1
984
Normal
-0.1
671
Tumor
-0.2
916
Normal
-0.2
142
Normal
-0.2
1014
Normal
-0.2
428
Normal
-0.2
186
Normal
-0.2
983
Tumor
-0.2
464
Normal
-0.2
456
Normal
-0.2
1032
Normal
-0.2
424
Normal
-0.2
132
Normal
-0.2
448
Normal
-0.2
376
Normal
-0.2
911
Tumor
-0.2
964
Normal
-0.2
976
Normal
-0.2
616
Normal
-0.2
868
Normal
-0.2
467
Tumor
-0.2
468
Normal
-0.2
211
Tumor
-0.2
1022
Normal
-0.2
148
Normal
-0.2
136
Normal
-0.2
956
Normal
-0.2
1045
Tumor
-0.2
958
Normal
-0.2
446
Normal
-0.2
778
Normal
-0.2
146
Normal
-0.2
278
Normal
-0.2
422
Normal
-0.2
938
Normal
-0.2
1042
Normal
-0.2
728
Normal
-0.2
258
Normal
-0.2
114
Normal
-0.2
737
Tumor
-0.2
1031
Tumor
-0.2
232
Normal
-0.2
196
Normal
-0.2
426
Normal
-0.2
212
Normal
-0.2
471
Tumor
-0.2
421
Tumor
-0.2
1016
Normal
-0.2
926
Normal
-0.2
368
Normal
-0.2
982
Normal
-0.2
354
Normal
-0.2
341
Tumor
-0.2
312
Normal
-0.2
444
Normal
-0.2
257
Tumor
-0.2
816
Normal
-0.2
918
Normal
-0.2
862
Normal
-0.2
472
Normal
-0.3
914
Normal
-0.3
882
Normal
-0.3
878
Normal
-0.3
481
Tumor
-0.3
131
Tumor
-0.3
545
Tumor
-0.3
447
Tumor
-0.3
864
Normal
-0.3
743
Tumor
-0.3
188
Normal
-0.3
286
Normal
-0.3
978
Normal
-0.3
866
Normal
-0.3
415
Tumor
-0.3
218
Normal
-0.3
366
Normal
-0.3
214
Normal
-0.3
745
Tumor
-0.3
332
Normal
-0.3
536
Normal
-0.3
528
Normal
-0.3
364
Normal
-0.3
113
Tumor
-0.3
271
Tumor
-0.3
884
Normal
-0.3
664
Normal
-0.3
262
Normal
-0.3
564
Normal
-0.3
852
Normal
-0.3
912
Normal
-0.3
362
Normal
-0.3
517
Tumor
-0.3
698
Normal
-0.3
384
Normal
-0.3
272
Normal
-0.3
363
Tumor
-0.3
192
Normal
-0.3
715
Tumor
-0.3
124
Normal
-0.3
352
Normal
-0.3
1025
Tumor
-0.3
126
Normal
-0.4
224
Normal
-0.4
642
Normal
-0.4
572
Normal
-0.4
558
Normal
-0.4
191
Tumor
-0.4
672
Normal
-0.4
666
Normal
-0.4
574
Normal
-0.4
618
Normal
-0.4
917
Tumor
-0.4
221
Tumor
-0.4
863
Tumor
-0.4
111
Normal
-0.4
1044
Normal
-0.4
127
Tumor
-0.4
393
Tumor
-0.4
1046
Normal
-0.4
617
Tumor
-0.4
662
Normal
-0.4
636
Normal
-0.4
568
Normal
-0.4
358
Normal
-0.5
1043
Tumor
-0.5
723
Tumor
-0.5
297
Tumor
-0.5
665
Tumor
-0.5
628
Normal
-0.5
647
Tumor
-0.5
261
Tumor
-0.5
187
Tumor
-0.6
147
Tumor
-0.6
641
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
