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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C14orf119 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
81.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
79.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
77.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
71.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
69.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
69.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
63.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
59.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
59.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
55.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
53.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
52.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
50.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
47.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
44.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
44.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
44.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
43.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
38.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
32.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
31.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
30.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C14orf119 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
139.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
54.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.3
965
Tumor
1.3
285
Tumor
1.3
283
Tumor
1.2
497
Tumor
1.1
125
Tumor
1.1
483
Tumor
1.0
395
Tumor
0.9
1027
Tumor
0.9
817
Tumor
0.8
123
Tumor
0.8
1042
Normal
0.8
1031
Tumor
0.8
525
Tumor
0.8
211
Tumor
0.8
227
Tumor
0.8
311
Tumor
0.8
661
Tumor
0.7
536
Normal
0.7
313
Tumor
0.7
917
Tumor
0.7
571
Tumor
0.7
267
Tumor
0.7
535
Tumor
0.7
135
Tumor
0.6
967
Tumor
0.6
1025
Tumor
0.6
491
Tumor
0.6
112
Tumor
0.6
447
Tumor
0.6
1041
Tumor
0.6
493
Tumor
0.5
492
Normal
0.5
713
Tumor
0.5
963
Tumor
0.5
1022
Normal
0.5
463
Tumor
0.5
534
Normal
0.5
663
Tumor
0.5
921
Tumor
0.5
557
Tumor
0.5
498
Normal
0.4
1032
Normal
0.4
743
Tumor
0.4
277
Tumor
0.4
865
Tumor
0.4
863
Tumor
0.4
391
Tumor
0.4
957
Tumor
0.4
1026
Normal
0.4
297
Tumor
0.3
815
Tumor
0.3
857
Tumor
0.3
617
Tumor
0.3
975
Tumor
0.3
514
Normal
0.3
685
Tumor
0.3
127
Tumor
0.3
616
Normal
0.3
923
Tumor
0.3
727
Tumor
0.3
494
Normal
0.3
445
Tumor
0.3
383
Tumor
0.3
487
Tumor
0.3
223
Tumor
0.3
563
Tumor
0.3
1021
Tumor
0.2
375
Tumor
0.2
524
Normal
0.2
145
Tumor
0.2
671
Tumor
0.2
724
Normal
0.2
696
Normal
0.2
386
Normal
0.2
1028
Normal
0.2
484
Normal
0.2
385
Tumor
0.2
722
Normal
0.2
715
Tumor
0.2
628
Normal
0.2
224
Normal
0.2
966
Normal
0.2
573
Tumor
0.1
365
Tumor
0.1
567
Tumor
0.1
686
Normal
0.1
393
Tumor
0.1
362
Normal
0.1
697
Tumor
0.1
958
Normal
0.1
737
Tumor
0.1
516
Normal
0.1
368
Normal
0.1
864
Normal
0.1
124
Normal
0.1
721
Tumor
0.1
716
Normal
0.1
257
Tumor
0.1
851
Tumor
0.1
384
Normal
0.1
131
Tumor
0.1
488
Normal
0.1
528
Normal
0.1
113
Tumor
0.1
868
Normal
0.1
1044
Normal
0.1
466
Normal
0.1
866
Normal
0.0
138
Normal
0.0
968
Normal
0.0
518
Normal
0.0
132
Normal
0.0
262
Normal
0.0
976
Normal
0.0
918
Normal
0.0
558
Normal
0.0
642
Normal
0.0
271
Tumor
0.0
618
Normal
0.0
572
Normal
0.0
455
Tumor
0.0
714
Normal
0.0
672
Normal
0.0
136
Normal
0.0
452
Normal
0.0
332
Normal
0.0
444
Normal
0.0
823
Tumor
0.0
141
Tumor
0.0
873
Tumor
0.0
312
Normal
0.0
268
Normal
0.0
261
Tumor
0.0
396
Normal
0.0
546
Normal
0.0
874
Normal
-0.1
284
Normal
-0.1
554
Normal
-0.1
636
Normal
-0.1
852
Normal
-0.1
434
Normal
-0.1
523
Tumor
-0.1
142
Normal
-0.1
1043
Tumor
-0.1
467
Tumor
-0.1
431
Tumor
-0.1
126
Normal
-0.1
376
Normal
-0.1
137
Tumor
-0.1
331
Tumor
-0.1
627
Tumor
-0.1
433
Tumor
-0.1
1045
Tumor
-0.1
926
Normal
-0.1
387
Tumor
-0.1
114
Normal
-0.1
146
Normal
-0.1
278
Normal
-0.1
574
Normal
-0.1
228
Normal
-0.1
916
Normal
-0.1
212
Normal
-0.1
1046
Normal
-0.1
922
Normal
-0.1
647
Tumor
-0.1
964
Normal
-0.1
361
Tumor
-0.2
464
Normal
-0.2
392
Normal
-0.2
862
Normal
-0.2
665
Tumor
-0.2
662
Normal
-0.2
111
Normal
-0.2
298
Normal
-0.2
448
Normal
-0.2
366
Normal
-0.2
513
Tumor
-0.2
272
Normal
-0.2
468
Normal
-0.2
451
Tumor
-0.2
231
Tumor
-0.2
568
Normal
-0.3
615
Tumor
-0.3
818
Normal
-0.3
553
Tumor
-0.3
128
Normal
-0.3
394
Normal
-0.3
741
Tumor
-0.3
641
Tumor
-0.3
527
Tumor
-0.3
526
Normal
-0.3
915
Tumor
-0.3
232
Normal
-0.3
824
Normal
-0.3
744
Normal
-0.3
314
Normal
-0.3
861
Tumor
-0.4
367
Tumor
-0.4
666
Normal
-0.4
435
Tumor
-0.4
564
Normal
-0.4
664
Normal
-0.4
517
Tumor
-0.4
648
Normal
-0.4
258
Normal
-0.4
858
Normal
-0.4
538
Normal
-0.4
742
Normal
-0.4
698
Normal
-0.4
738
Normal
-0.4
867
Tumor
-0.4
723
Tumor
-0.4
924
Normal
-0.4
456
Normal
-0.5
432
Normal
-0.5
925
Tumor
-0.5
465
Tumor
-0.5
816
Normal
-0.5
388
Normal
-0.5
436
Normal
-0.5
515
Tumor
-0.5
728
Normal
-0.5
286
Normal
-0.6
443
Tumor
-0.6
635
Tumor
-0.6
446
Normal
-0.6
537
Tumor
-0.7
545
Tumor
-0.7
533
Tumor
-0.8
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
