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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
R3HDM2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
53.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
R3HDM2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.9
Number of samples
231
Samples
Sample
Description
TPM
DO45263
0 years, male, NA, stage:3, dead, 270 days
65.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
54.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
873
Tumor
1.1
911
Tumor
0.9
981
Tumor
0.8
327
Tumor
0.7
114
Normal
0.7
171
Tumor
0.7
695
Tumor
0.7
937
Tumor
0.7
685
Tumor
0.6
627
Tumor
0.6
365
Tumor
0.6
446
Normal
0.6
925
Tumor
0.6
696
Normal
0.6
721
Tumor
0.6
915
Tumor
0.6
568
Normal
0.6
145
Tumor
0.6
785
Tumor
0.6
716
Normal
0.5
126
Normal
0.5
1014
Normal
0.5
113
Tumor
0.5
955
Tumor
0.5
713
Tumor
0.5
487
Tumor
0.5
123
Tumor
0.5
882
Normal
0.5
128
Normal
0.5
367
Tumor
0.5
422
Normal
0.5
1016
Normal
0.5
498
Normal
0.5
141
Tumor
0.5
484
Normal
0.5
982
Normal
0.5
132
Normal
0.5
111
Normal
0.4
518
Normal
0.4
127
Tumor
0.4
913
Tumor
0.4
426
Normal
0.4
722
Normal
0.4
884
Normal
0.4
756
Normal
0.4
863
Tumor
0.4
746
Normal
0.4
574
Normal
0.4
474
Normal
0.4
423
Tumor
0.4
513
Tumor
0.4
445
Tumor
0.4
816
Normal
0.4
342
Normal
0.4
497
Tumor
0.4
186
Normal
0.4
147
Tumor
0.4
138
Normal
0.4
572
Normal
0.4
786
Normal
0.4
481
Tumor
0.4
434
Normal
0.4
432
Normal
0.4
161
Tumor
0.3
112
Tumor
0.3
354
Normal
0.3
494
Normal
0.3
778
Normal
0.3
142
Normal
0.3
488
Normal
0.3
353
Tumor
0.3
137
Tumor
0.3
912
Normal
0.3
131
Tumor
0.3
526
Normal
0.3
436
Normal
0.3
868
Normal
0.3
124
Normal
0.3
162
Normal
0.3
515
Tumor
0.3
953
Tumor
0.3
635
Tumor
0.3
1013
Tumor
0.3
388
Normal
0.3
528
Normal
0.3
366
Normal
0.3
956
Normal
0.3
416
Normal
0.3
641
Tumor
0.3
482
Normal
0.3
984
Normal
0.3
383
Tumor
0.3
814
Normal
0.3
356
Normal
0.3
742
Normal
0.3
777
Tumor
0.3
424
Normal
0.3
421
Tumor
0.3
978
Normal
0.3
358
Normal
0.3
472
Normal
0.3
527
Tumor
0.2
723
Tumor
0.2
965
Tumor
0.2
375
Tumor
0.2
443
Tumor
0.2
944
Normal
0.2
818
Normal
0.2
813
Tumor
0.2
364
Normal
0.2
983
Tumor
0.2
686
Normal
0.2
878
Normal
0.2
1045
Tumor
0.2
146
Normal
0.2
924
Normal
0.2
462
Normal
0.2
221
Tumor
0.2
564
Normal
0.2
368
Normal
0.2
918
Normal
0.2
1015
Tumor
0.2
514
Normal
0.2
433
Tumor
0.2
558
Normal
0.2
478
Normal
0.2
1027
Tumor
0.2
862
Normal
0.2
376
Normal
0.2
571
Tumor
0.2
662
Normal
0.2
938
Normal
0.2
412
Normal
0.2
444
Normal
0.2
392
Normal
0.2
1046
Normal
0.2
964
Normal
0.2
617
Tumor
0.2
628
Normal
0.2
428
Normal
0.2
922
Normal
0.2
744
Normal
0.2
615
Tumor
0.2
616
Normal
0.2
563
Tumor
0.2
546
Normal
0.2
431
Tumor
0.2
355
Tumor
0.2
697
Tumor
0.2
866
Normal
0.2
148
Normal
0.1
642
Normal
0.1
188
Normal
0.1
361
Tumor
0.1
272
Normal
0.1
852
Normal
0.1
698
Normal
0.1
864
Normal
0.1
618
Normal
0.1
328
Normal
0.1
125
Tumor
0.1
824
Normal
0.1
874
Normal
0.1
362
Normal
0.1
411
Tumor
0.1
857
Tumor
0.1
258
Normal
0.1
172
Normal
0.1
461
Tumor
0.1
187
Tumor
0.1
966
Normal
0.1
477
Tumor
0.1
534
Normal
0.1
232
Normal
0.1
741
Tumor
0.1
567
Tumor
0.1
516
Normal
0.1
136
Normal
0.1
447
Tumor
0.1
394
Normal
0.1
916
Normal
0.1
268
Normal
0.1
492
Normal
0.1
867
Tumor
0.1
262
Normal
0.1
883
Tumor
0.1
714
Normal
0.1
977
Tumor
0.1
648
Normal
0.1
664
Normal
0.1
493
Tumor
0.1
952
Normal
0.1
1042
Normal
0.1
976
Normal
0.1
396
Normal
0.1
663
Tumor
0.0
958
Normal
0.0
926
Normal
0.0
185
Tumor
0.0
1021
Tumor
0.0
858
Normal
0.0
352
Normal
0.0
533
Tumor
0.0
636
Normal
0.0
666
Normal
0.0
448
Normal
0.0
357
Tumor
0.0
738
Normal
0.0
1032
Normal
0.0
954
Normal
0.0
943
Tumor
0.0
483
Tumor
0.0
524
Normal
0.0
414
Normal
0.0
968
Normal
0.0
191
Tumor
0.0
957
Tumor
0.0
267
Tumor
0.0
386
Normal
0.0
665
Tumor
0.0
728
Normal
0.0
393
Tumor
0.0
135
Tumor
0.0
384
Normal
-0.1
861
Tumor
-0.1
672
Normal
-0.1
1026
Normal
-0.1
1043
Tumor
-0.1
851
Tumor
-0.1
554
Normal
-0.1
914
Normal
-0.1
745
Tumor
-0.1
415
Tumor
-0.1
231
Tumor
-0.1
921
Tumor
-0.1
1044
Normal
-0.1
536
Normal
-0.1
975
Tumor
-0.1
332
Normal
-0.1
395
Tumor
-0.1
865
Tumor
-0.1
545
Tumor
-0.1
385
Tumor
-0.1
1041
Tumor
-0.1
523
Tumor
-0.1
963
Tumor
-0.1
538
Normal
-0.2
517
Tumor
-0.2
755
Tumor
-0.2
491
Tumor
-0.2
261
Tumor
-0.2
471
Tumor
-0.2
877
Tumor
-0.2
1028
Normal
-0.2
195
Tumor
-0.2
473
Tumor
-0.2
435
Tumor
-0.2
344
Normal
-0.2
427
Tumor
-0.3
413
Tumor
-0.3
271
Tumor
-0.3
823
Tumor
-0.3
196
Normal
-0.3
341
Tumor
-0.3
553
Tumor
-0.3
1022
Normal
-0.3
343
Tumor
-0.3
817
Tumor
-0.3
213
Tumor
-0.3
222
Normal
-0.3
1031
Tumor
-0.3
351
Tumor
-0.3
387
Tumor
-0.3
312
Normal
-0.4
363
Tumor
-0.4
815
Tumor
-0.4
671
Tumor
-0.4
535
Tumor
-0.4
967
Tumor
-0.4
557
Tumor
-0.4
391
Tumor
-0.4
881
Tumor
-0.4
297
Tumor
-0.4
537
Tumor
-0.4
214
Normal
-0.4
192
Normal
-0.4
218
Normal
-0.4
217
Tumor
-0.4
1025
Tumor
-0.4
923
Tumor
-0.4
727
Tumor
-0.4
724
Normal
-0.4
715
Tumor
-0.5
951
Tumor
-0.5
525
Tumor
-0.5
257
Tumor
-0.5
313
Tumor
-0.5
737
Tumor
-0.5
314
Normal
-0.5
917
Tumor
-0.6
278
Normal
-0.6
573
Tumor
-0.7
743
Tumor
-0.8
647
Tumor
-0.8
331
Tumor
-0.9
311
Tumor
-0.9
661
Tumor
-0.9
425
Tumor
-0.9
298
Normal
-1.3
277
Tumor
-1.7
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
