MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.9 nTPM
HPA Brain:42.7 nTPM
GTEx:20.9 nTPM
FANTOM5:19.7 Scaled Tags Per Million
Pig:34.2 nTPM
Mouse:56.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.3
2219 Male, age 76, both hemispheres 41.7
2666 Male, age 74, left hemisphere 38.2
1830 Male, age 51, unknown 38.0
1870 Female, age 42, unknown 36.6
2586 Male, age 75, left hemisphere 36.4
2411 Female, age 72, unknown 34.6
1833 Male, age 53, unknown 33.9
1827 Male, age 72, unknown 31.9
2828 Female, age 72, unknown 31.1
2019 Male, age 18, unknown 30.5
Dorsal raphe nucleus
nTPM: 33.9
2047 Male, age 72, unknown 38.7
2750 Male, age 76, both hemispheres 38.0
1828 Male, age 53, unknown 31.5
2016 Female, age 72, unknown 30.9
2298 Female, age 72, unknown 30.2
Inferior colliculus
nTPM: 35.7
1890 Male, age 53, unknown 38.0
2849 Male, age 72, unknown 36.6
1848 Female, age 42, unknown 34.9
2097 Female, age 72, unknown 33.4
Median raphe nucleus
nTPM: 42.7
2220 Male, age 76, midline 42.7
Periaquaductal grey, anterior
nTPM: 35.9
2502 Female, age 75, unknown 38.1
1947 Male, age 18, unknown 36.0
1795 Male, age 51, unknown 33.6
Periaquaductal grey, dorsal
nTPM: 34.7
1840 Male, age 53, unknown 36.2
2464 Female, age 72, unknown 35.2
2850 Male, age 76, both hemispheres 33.9
1831 Male, age 72, unknown 33.6
Periaquaductal grey, lateral
nTPM: 34.1
2140 Male, age 76, both hemispheres 35.1
2053 Male, age 18, unknown 34.8
2272 Male, age 74, both hemispheres 32.4
Pretectal area
nTPM: 33.9
2407 Male, age 75, both hemispheres 41.3
2316 Male, age 76, right hemisphere 39.3
2825 Male, age 18, unknown 37.3
1816 Male, age 51, unknown 35.6
2224 Female, age 72, unknown 35.2
1817 Female, age 42, unknown 33.7
2667 Female, age 75, unknown 33.1
1944 Female, age 72, unknown 32.0
2007 Male, age 72, unknown 30.2
2273 Male, age 74, both hemispheres 29.7
1815 Male, age 53, unknown 25.1
Red nucleus
nTPM: 34.9
2823 Male, age 76, right hemisphere 41.2
2584 Male, age 75, left hemisphere 39.8
1904 Male, age 53, unknown 38.2
2588 Male, age 74, left hemisphere 35.9
1865 Male, age 51, unknown 34.1
2227 Male, age 72, unknown 34.1
1821 Female, age 72, unknown 34.0
2769 Male, age 72, unknown 33.8
2725 Female, age 75, unknown 33.6
2785 Male, age 18, unknown 33.2
1954 Female, age 42, unknown 31.3
2503 Female, age 72, unknown 30.0
Substantia nigra
nTPM: 35.8
2241 Male, age 72, unknown 44.3
2665 Male, age 74, both hemispheres 40.4
1916 Female, age 42, unknown 39.7
1941 Male, age 53, unknown 35.7
2590 Female, age 75, unknown 35.5
2699 Male, age 18, unknown 34.3
2583 Male, age 75, right hemisphere 33.7
1851 Male, age 51, unknown 33.5
1889 Female, age 72, unknown 31.6
2409 Female, age 72, unknown 29.1
Superior colliculus
nTPM: 34.7
2664 Male, age 75, both hemispheres 40.2
1895 Male, age 76, right hemisphere 40.1
2261 Male, age 18, unknown 37.8
1796 Male, age 53, unknown 36.5
1839 Male, age 51, unknown 34.9
2668 Female, age 75, unknown 34.1
2087 Female, age 72, unknown 31.8
1995 Male, age 72, unknown 31.1
2587 Male, age 74, left hemisphere 31.0
1913 Female, age 42, unknown 29.4
Ventral tegmental area
nTPM: 34.8
2021 Male, age 53, unknown 39.6
2223 Female, age 72, unknown 35.3
2218 Male, age 76, both hemispheres 34.9
1942 Male, age 51, unknown 34.5
1915 Female, age 42, unknown 33.5
2410 Female, age 72, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.9
Samples: 139

Max nTPM: 46.5
Min nTPM: 13.9
Std nTPM: 4.0
Median nTPM: 20.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 32.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 31.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 30.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 28.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 27.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 27.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 26.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 26.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 26.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.7
FF:10158-103A5 76 years, female 19.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 33.5
Min nTPM: 30.5
Sample A Female 32.9
Sample B Female 30.8
Sample C Male 30.5
Sample D Male 33.5
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 45.0
Min nTPM: 28.4
Sample A Female 45.0
Sample B Female 30.2
Sample C Male 33.2
Sample D Male 28.4
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 27.9
Min nTPM: 24.4
Sample B Female 27.9
Sample C Male 27.8
Sample D Male 24.4
Superior colliculi
nTPM: 31.1
Samples: 4

Max nTPM: 32.0
Min nTPM: 30.3
Sample A Female 31.3
Sample B Female 30.8
Sample C Male 32.0
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 56.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.5
Samples: 4

Max nTPM: 62.0
Min nTPM: 53.2
Sample A Male 53.2
Sample B Male 57.3
Sample C Female 62.0
Sample D Female 53.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68269038 Antisense, RP_041208_01_F01, Mouse strain C57BL/6J (56 days, male) 1.9
77869146 Antisense, RP_070205_01_A12, Mouse strain C57BL/6J (56 days, male) 0.9

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