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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ALOX15B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
98.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
97.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
63.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
49.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
42.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ALOX15B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.3
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
75.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
44.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
141
Tumor
3.4
161
Tumor
3.4
285
Tumor
2.5
473
Tumor
2.5
461
Tumor
2.4
537
Tumor
2.2
452
Normal
2.2
468
Normal
2.2
865
Tumor
2.2
665
Tumor
2.1
456
Normal
2.1
451
Tumor
2.0
464
Normal
1.9
467
Tumor
1.8
267
Tumor
1.8
851
Tumor
1.8
465
Tumor
1.8
463
Tumor
1.7
125
Tumor
1.7
466
Normal
1.6
455
Tumor
1.1
815
Tumor
0.9
137
Tumor
0.9
147
Tumor
0.4
433
Tumor
0.4
171
Tumor
0.4
162
Normal
0.3
635
Tumor
0.3
148
Normal
0.3
186
Normal
0.3
172
Normal
0.2
535
Tumor
0.2
863
Tumor
0.1
142
Normal
0.0
697
Tumor
0.0
138
Normal
0.0
145
Tumor
0.0
868
Normal
0.0
232
Normal
0.0
188
Normal
0.0
258
Normal
-0.1
132
Normal
-0.1
862
Normal
-0.1
286
Normal
-0.1
268
Normal
-0.2
262
Normal
-0.2
136
Normal
-0.2
272
Normal
-0.2
185
Tumor
-0.2
817
Tumor
-0.2
864
Normal
-0.2
146
Normal
-0.2
661
Tumor
-0.3
866
Normal
-0.3
187
Tumor
-0.3
444
Normal
-0.3
224
Normal
-0.3
874
Normal
-0.3
664
Normal
-0.3
261
Tumor
-0.3
135
Tumor
-0.4
231
Tumor
-0.4
648
Normal
-0.4
472
Normal
-0.4
538
Normal
-0.4
478
Normal
-0.4
672
Normal
-0.4
227
Tumor
-0.4
1045
Tumor
-0.4
212
Normal
-0.4
257
Tumor
-0.5
647
Tumor
-0.5
228
Normal
-0.5
534
Normal
-0.5
698
Normal
-0.5
482
Normal
-0.5
662
Normal
-0.5
666
Normal
-0.5
861
Tumor
-0.5
126
Normal
-0.5
271
Tumor
-0.5
824
Normal
-0.6
911
Tumor
-0.6
284
Normal
-0.6
858
Normal
-0.6
671
Tumor
-0.6
211
Tumor
-0.6
546
Normal
-0.6
818
Normal
-0.6
223
Tumor
-0.6
873
Tumor
-0.6
124
Normal
-0.6
912
Normal
-0.6
474
Normal
-0.7
536
Normal
-0.7
131
Tumor
-0.7
113
Tumor
-0.7
283
Tumor
-0.7
112
Tumor
-0.7
1046
Normal
-0.7
528
Normal
-0.7
884
Normal
-0.7
111
Normal
-0.7
914
Normal
-0.7
553
Tumor
-0.7
123
Tumor
-0.8
852
Normal
-0.8
883
Tumor
-0.8
533
Tumor
-0.8
481
Tumor
-0.9
114
Normal
-0.9
913
Tumor
-0.9
446
Normal
-0.9
447
Tumor
-0.9
554
Normal
-0.9
462
Normal
-0.9
448
Normal
-0.9
816
Normal
-0.9
545
Tumor
-0.9
642
Normal
-0.9
878
Normal
-0.9
432
Normal
-1.0
882
Normal
-1.0
434
Normal
-1.0
527
Tumor
-1.0
618
Normal
-1.1
867
Tumor
-1.1
857
Tumor
-1.1
127
Tumor
-1.1
663
Tumor
-1.1
823
Tumor
-1.1
128
Normal
-1.1
436
Normal
-1.1
617
Tumor
-1.1
627
Tumor
-1.2
1044
Normal
-1.2
615
Tumor
-1.2
881
Tumor
-1.3
445
Tumor
-1.3
431
Tumor
-1.3
877
Tumor
-1.3
443
Tumor
-1.3
616
Normal
-1.3
471
Tumor
-1.3
636
Normal
-1.4
1043
Tumor
-1.4
477
Tumor
-1.5
641
Tumor
-1.5
628
Normal
-1.5
435
Tumor
-2.0
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
487
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
983
Tumor
N/A
742
Normal
N/A
984
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
756
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
