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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHARPIN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
62.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
245.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
203.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
184.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
183.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
181.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
172.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
169.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
166.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
165.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
165.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
164.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
158.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
154.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
151.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
136.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
133.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
131.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
129.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
129.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
126.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
126.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
126.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
124.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
124.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
122.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
121.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
120.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
116.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
115.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
115.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
114.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
114.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
113.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
113.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
112.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
112.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
109.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
108.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
108.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
105.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
105.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
105.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
104.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
104.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
104.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
103.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
101.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
100.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
99.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
99.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
98.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
97.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
97.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
96.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
96.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
94.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
94.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
94.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
93.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
93.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
92.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
92.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
92.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
91.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
88.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
88.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
88.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
88.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
87.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
86.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
86.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
86.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
86.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
86.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
86.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
86.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
84.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
84.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
83.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
82.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
82.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
81.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
80.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
80.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
80.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
79.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
78.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
77.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
77.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
77.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
77.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
76.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
76.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
76.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
76.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
76.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
76.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
76.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
75.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
75.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
75.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
75.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
74.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
74.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
73.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
73.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
72.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
72.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
72.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
71.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
71.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
70.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
70.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
70.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
70.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
69.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
69.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
69.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
68.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
68.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
68.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
66.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
66.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
65.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
65.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
65.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
65.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
65.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
65.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
64.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
64.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
64.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
64.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
64.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
63.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
63.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
63.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
63.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
62.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
62.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
62.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
62.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
62.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
61.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
61.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
60.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
60.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
60.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
60.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
60.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
59.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
59.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
59.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
59.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
58.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
58.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
57.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
57.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
57.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
57.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
57.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
56.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
56.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
56.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
56.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
55.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
55.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
55.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
54.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
54.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
54.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
54.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
53.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
53.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
53.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
53.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
53.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
53.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
53.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
52.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
52.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
52.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
52.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
51.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
50.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
50.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
50.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
50.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
50.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
50.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
50.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
49.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
49.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
49.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
48.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
48.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
48.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
48.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
47.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
47.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
46.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
46.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
46.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
46.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
46.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
46.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
45.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
45.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
45.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
44.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
43.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
43.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
42.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
42.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
42.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
42.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
42.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
42.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
41.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
41.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
40.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
40.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
40.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
40.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
40.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
39.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
39.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
38.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
37.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
37.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
35.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
34.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
31.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
30.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHARPIN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.9
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
149.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
128.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
102.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
99.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
96.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
94.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
93.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
91.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
90.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
88.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
85.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
83.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
82.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
81.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
80.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
73.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
69.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
68.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
61.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
59.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
59.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
59.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
58.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
57.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
56.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
55.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
55.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
54.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
54.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
53.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
53.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
52.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
52.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
51.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
51.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
49.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
49.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
48.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
48.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
45.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
45.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
45.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
45.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
45.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
44.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
42.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
41.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
40.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
39.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
38.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
37.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
37.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
37.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
36.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
35.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
33.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
0.9
951
Tumor
0.8
267
Tumor
0.8
641
Tumor
0.8
1015
Tumor
0.7
823
Tumor
0.7
863
Tumor
0.6
537
Tumor
0.6
937
Tumor
0.6
817
Tumor
0.6
868
Normal
0.6
743
Tumor
0.6
917
Tumor
0.6
873
Tumor
0.5
864
Normal
0.5
1041
Tumor
0.5
965
Tumor
0.5
567
Tumor
0.5
866
Normal
0.5
463
Tumor
0.5
723
Tumor
0.5
351
Tumor
0.5
874
Normal
0.5
483
Tumor
0.4
663
Tumor
0.4
221
Tumor
0.4
737
Tumor
0.4
533
Tumor
0.4
443
Tumor
0.4
487
Tumor
0.4
912
Normal
0.4
1046
Normal
0.4
728
Normal
0.4
724
Normal
0.4
363
Tumor
0.4
627
Tumor
0.3
451
Tumor
0.3
161
Tumor
0.3
361
Tumor
0.3
1044
Normal
0.3
1045
Tumor
0.3
413
Tumor
0.3
283
Tumor
0.3
851
Tumor
0.3
467
Tumor
0.3
714
Normal
0.3
392
Normal
0.3
877
Tumor
0.3
862
Normal
0.3
327
Tumor
0.3
564
Normal
0.3
493
Tumor
0.3
568
Normal
0.3
525
Tumor
0.3
231
Tumor
0.3
921
Tumor
0.3
975
Tumor
0.3
963
Tumor
0.3
415
Tumor
0.3
636
Normal
0.3
571
Tumor
0.3
617
Tumor
0.3
861
Tumor
0.2
715
Tumor
0.2
698
Normal
0.2
312
Normal
0.2
744
Normal
0.2
391
Tumor
0.2
386
Normal
0.2
141
Tumor
0.2
978
Normal
0.2
366
Normal
0.2
421
Tumor
0.2
277
Tumor
0.2
488
Normal
0.2
367
Tumor
0.2
112
Tumor
0.2
411
Tumor
0.2
388
Normal
0.2
536
Normal
0.2
113
Tumor
0.2
362
Normal
0.2
262
Normal
0.2
1027
Tumor
0.2
513
Tumor
0.2
427
Tumor
0.2
515
Tumor
0.2
218
Normal
0.2
448
Normal
0.2
135
Tumor
0.2
332
Normal
0.2
635
Tumor
0.2
145
Tumor
0.2
395
Tumor
0.2
258
Normal
0.2
224
Normal
0.2
716
Normal
0.2
471
Tumor
0.2
222
Normal
0.2
721
Tumor
0.2
884
Normal
0.2
484
Normal
0.2
976
Normal
0.2
445
Tumor
0.2
882
Normal
0.2
278
Normal
0.2
925
Tumor
0.2
523
Tumor
0.2
957
Tumor
0.2
915
Tumor
0.2
365
Tumor
0.2
818
Normal
0.2
1031
Tumor
0.2
494
Normal
0.1
227
Tumor
0.1
738
Normal
0.1
217
Tumor
0.1
385
Tumor
0.1
628
Normal
0.1
376
Normal
0.1
563
Tumor
0.1
497
Tumor
0.1
558
Normal
0.1
358
Normal
0.1
816
Normal
0.1
313
Tumor
0.1
314
Normal
0.1
416
Normal
0.1
498
Normal
0.1
914
Normal
0.1
616
Normal
0.1
924
Normal
0.1
191
Tumor
0.1
722
Normal
0.1
387
Tumor
0.1
642
Normal
0.1
396
Normal
0.1
195
Tumor
0.1
356
Normal
0.1
186
Normal
0.1
1028
Normal
0.1
926
Normal
0.1
923
Tumor
0.1
516
Normal
0.1
1025
Tumor
0.1
473
Tumor
0.1
685
Tumor
0.1
1016
Normal
0.1
492
Normal
0.1
858
Normal
0.1
1013
Tumor
0.1
257
Tumor
0.1
444
Normal
0.1
982
Normal
0.1
286
Normal
0.1
916
Normal
0.1
223
Tumor
0.1
913
Tumor
0.1
574
Normal
0.1
686
Normal
0.1
212
Normal
0.1
741
Tumor
0.1
297
Tumor
0.1
881
Tumor
0.1
852
Normal
0.1
171
Tumor
0.1
272
Normal
0.1
572
Normal
0.1
433
Tumor
0.1
672
Normal
0.1
618
Normal
0.1
394
Normal
0.1
192
Normal
0.1
911
Tumor
0.1
1014
Normal
0.1
918
Normal
0.1
867
Tumor
0.1
573
Tumor
0.1
857
Tumor
0.1
446
Normal
0.1
1043
Tumor
0.1
355
Tumor
0.0
472
Normal
0.0
228
Normal
0.0
188
Normal
0.0
268
Normal
0.0
713
Tumor
0.0
364
Normal
0.0
455
Tumor
0.0
131
Tumor
0.0
943
Tumor
0.0
517
Tumor
0.0
343
Tumor
0.0
187
Tumor
0.0
211
Tumor
0.0
123
Tumor
0.0
232
Normal
0.0
298
Normal
0.0
271
Tumor
0.0
147
Tumor
0.0
1022
Normal
0.0
745
Tumor
0.0
697
Tumor
0.0
127
Tumor
0.0
815
Tumor
0.0
615
Tumor
0.0
824
Normal
0.0
284
Normal
0.0
958
Normal
0.0
368
Normal
0.0
126
Normal
0.0
328
Normal
0.0
466
Normal
0.0
968
Normal
0.0
111
Normal
0.0
357
Tumor
0.0
434
Normal
0.0
922
Normal
0.0
393
Tumor
0.0
412
Normal
0.0
353
Tumor
0.0
196
Normal
0.0
124
Normal
0.0
414
Normal
0.0
966
Normal
0.0
977
Tumor
0.0
534
Normal
0.0
478
Normal
0.0
1042
Normal
0.0
375
Tumor
0.0
983
Tumor
0.0
462
Normal
0.0
666
Normal
0.0
465
Tumor
0.0
477
Tumor
0.0
518
Normal
0.0
524
Normal
0.0
557
Tumor
0.0
354
Normal
0.0
696
Normal
0.0
114
Normal
0.0
125
Tumor
0.0
953
Tumor
0.0
481
Tumor
0.0
756
Normal
0.0
213
Tumor
0.0
185
Tumor
0.0
432
Normal
0.0
944
Normal
0.0
261
Tumor
0.0
146
Normal
0.0
883
Tumor
-0.1
964
Normal
-0.1
482
Normal
-0.1
162
Normal
-0.1
424
Normal
-0.1
878
Normal
-0.1
671
Tumor
-0.1
352
Normal
-0.1
344
Normal
-0.1
384
Normal
-0.1
938
Normal
-0.1
538
Normal
-0.1
786
Normal
-0.1
662
Normal
-0.1
514
Normal
-0.1
214
Normal
-0.1
447
Tumor
-0.1
528
Normal
-0.1
491
Tumor
-0.1
474
Normal
-0.1
464
Normal
-0.1
984
Normal
-0.1
138
Normal
-0.1
431
Tumor
-0.1
456
Normal
-0.1
148
Normal
-0.1
423
Tumor
-0.1
172
Normal
-0.1
342
Normal
-0.1
956
Normal
-0.1
742
Normal
-0.1
468
Normal
-0.1
727
Tumor
-0.1
695
Tumor
-0.1
341
Tumor
-0.1
526
Normal
-0.1
967
Tumor
-0.1
136
Normal
-0.1
814
Normal
-0.2
665
Tumor
-0.2
331
Tumor
-0.2
142
Normal
-0.2
664
Normal
-0.2
546
Normal
-0.2
461
Tumor
-0.2
746
Normal
-0.2
954
Normal
-0.2
452
Normal
-0.2
545
Tumor
-0.2
955
Tumor
-0.2
311
Tumor
-0.2
435
Tumor
-0.2
426
Normal
-0.2
285
Tumor
-0.2
981
Tumor
-0.2
128
Normal
-0.2
527
Tumor
-0.2
952
Normal
-0.2
428
Normal
-0.2
535
Tumor
-0.2
554
Normal
-0.2
383
Tumor
-0.3
648
Normal
-0.3
785
Tumor
-0.3
755
Tumor
-0.3
132
Normal
-0.3
778
Normal
-0.3
436
Normal
-0.3
1032
Normal
-0.3
647
Tumor
-0.3
1026
Normal
-0.4
813
Tumor
-0.4
422
Normal
-0.4
553
Tumor
-0.4
137
Tumor
-0.4
661
Tumor
-0.5
1021
Tumor
-0.5
777
Tumor
-0.5
425
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
