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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLK3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
53.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
29.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
25.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLK3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.2
Number of samples
231
Samples
Sample
Description
TPM
DO50816
0 years, male, NA, stage:2, alive, 390 days
69.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
68.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
68.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
66.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
65.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
61.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
58.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
58.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
57.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
54.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
52.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
52.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
51.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
51.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
43.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
41.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
35.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
1.0
114
Normal
0.9
375
Tumor
0.9
111
Normal
0.8
125
Tumor
0.8
124
Normal
0.8
123
Tumor
0.8
367
Tumor
0.8
126
Normal
0.8
387
Tumor
0.7
937
Tumor
0.7
112
Tumor
0.6
573
Tumor
0.6
877
Tumor
0.6
467
Tumor
0.6
257
Tumor
0.6
128
Normal
0.6
428
Normal
0.5
1027
Tumor
0.5
414
Normal
0.5
383
Tumor
0.5
127
Tumor
0.5
213
Tumor
0.5
433
Tumor
0.5
385
Tumor
0.5
413
Tumor
0.5
424
Normal
0.5
258
Normal
0.4
232
Normal
0.4
615
Tumor
0.4
268
Normal
0.4
865
Tumor
0.4
483
Tumor
0.4
951
Tumor
0.4
171
Tumor
0.4
715
Tumor
0.4
272
Normal
0.4
1041
Tumor
0.4
493
Tumor
0.4
824
Normal
0.4
217
Tumor
0.4
313
Tumor
0.4
391
Tumor
0.4
211
Tumor
0.4
351
Tumor
0.4
192
Normal
0.3
394
Normal
0.3
191
Tumor
0.3
262
Normal
0.3
685
Tumor
0.3
665
Tumor
0.3
497
Tumor
0.3
953
Tumor
0.3
365
Tumor
0.3
357
Tumor
0.3
648
Normal
0.3
395
Tumor
0.3
661
Tumor
0.3
361
Tumor
0.3
222
Normal
0.3
231
Tumor
0.3
422
Normal
0.3
283
Tumor
0.3
444
Normal
0.3
616
Normal
0.3
785
Tumor
0.3
358
Normal
0.3
456
Normal
0.3
451
Tumor
0.3
434
Normal
0.3
162
Normal
0.3
185
Tumor
0.3
423
Tumor
0.3
353
Tumor
0.3
376
Normal
0.3
172
Normal
0.3
386
Normal
0.3
368
Normal
0.3
285
Tumor
0.2
635
Tumor
0.2
186
Normal
0.2
664
Normal
0.2
218
Normal
0.2
883
Tumor
0.2
388
Normal
0.2
261
Tumor
0.2
342
Normal
0.2
671
Tumor
0.2
618
Normal
0.2
362
Normal
0.2
1014
Normal
0.2
147
Tumor
0.2
196
Normal
0.2
384
Normal
0.2
187
Tumor
0.2
343
Tumor
0.2
1021
Tumor
0.2
537
Tumor
0.2
392
Normal
0.2
698
Normal
0.2
818
Normal
0.2
513
Tumor
0.2
851
Tumor
0.2
981
Tumor
0.2
567
Tumor
0.2
443
Tumor
0.2
672
Normal
0.2
858
Normal
0.2
533
Tumor
0.2
331
Tumor
0.1
563
Tumor
0.1
1016
Normal
0.1
148
Normal
0.1
491
Tumor
0.1
432
Normal
0.1
344
Normal
0.1
446
Normal
0.1
545
Tumor
0.1
341
Tumor
0.1
564
Normal
0.1
195
Tumor
0.1
777
Tumor
0.1
641
Tumor
0.1
1028
Normal
0.1
861
Tumor
0.1
214
Normal
0.1
425
Tumor
0.1
396
Normal
0.1
978
Normal
0.1
662
Normal
0.1
141
Tumor
0.1
517
Tumor
0.1
161
Tumor
0.1
628
Normal
0.1
311
Tumor
0.1
744
Normal
0.1
816
Normal
0.1
917
Tumor
0.1
983
Tumor
0.1
867
Tumor
0.1
538
Normal
0.1
227
Tumor
0.1
627
Tumor
0.1
464
Normal
0.1
482
Normal
0.1
468
Normal
0.1
267
Tumor
0.1
724
Normal
0.1
277
Tumor
0.1
881
Tumor
0.1
452
Normal
0.1
814
Normal
0.1
528
Normal
0.0
955
Tumor
0.0
366
Normal
0.0
188
Normal
0.0
925
Tumor
0.0
534
Normal
0.0
427
Tumor
0.0
642
Normal
0.0
755
Tumor
0.0
984
Normal
0.0
393
Tumor
0.0
884
Normal
0.0
815
Tumor
0.0
666
Normal
0.0
332
Normal
0.0
271
Tumor
0.0
471
Tumor
0.0
445
Tumor
0.0
481
Tumor
0.0
663
Tumor
0.0
477
Tumor
0.0
466
Normal
0.0
912
Normal
0.0
436
Normal
0.0
447
Tumor
0.0
786
Normal
0.0
473
Tumor
0.0
743
Tumor
0.0
1031
Tumor
0.0
312
Normal
0.0
527
Tumor
0.0
863
Tumor
0.0
852
Normal
0.0
487
Tumor
0.0
636
Normal
0.0
352
Normal
0.0
742
Normal
0.0
923
Tumor
0.0
221
Tumor
0.0
488
Normal
0.0
966
Normal
0.0
135
Tumor
0.0
1044
Normal
0.0
298
Normal
0.0
813
Tumor
0.0
455
Tumor
0.0
461
Tumor
0.0
297
Tumor
0.0
926
Normal
0.0
713
Tumor
-0.1
882
Normal
-0.1
223
Tumor
-0.1
943
Tumor
-0.1
914
Normal
-0.1
745
Tumor
-0.1
873
Tumor
-0.1
472
Normal
-0.1
1015
Tumor
-0.1
716
Normal
-0.1
465
Tumor
-0.1
874
Normal
-0.1
492
Normal
-0.1
686
Normal
-0.1
866
Normal
-0.1
224
Normal
-0.1
546
Normal
-0.1
721
Tumor
-0.1
911
Tumor
-0.1
494
Normal
-0.1
426
Normal
-0.1
982
Normal
-0.1
558
Normal
-0.1
647
Tumor
-0.1
354
Normal
-0.1
738
Normal
-0.1
954
Normal
-0.1
478
Normal
-0.1
967
Tumor
-0.1
228
Normal
-0.1
728
Normal
-0.1
944
Normal
-0.1
737
Tumor
-0.1
1043
Tumor
-0.1
568
Normal
-0.1
1026
Normal
-0.1
462
Normal
-0.1
314
Normal
-0.1
535
Tumor
-0.1
518
Normal
-0.1
498
Normal
-0.1
1046
Normal
-0.1
411
Tumor
-0.1
136
Normal
-0.1
484
Normal
-0.1
138
Normal
-0.2
574
Normal
-0.2
448
Normal
-0.2
421
Tumor
-0.2
696
Normal
-0.2
722
Normal
-0.2
132
Normal
-0.2
553
Tumor
-0.2
515
Tumor
-0.2
572
Normal
-0.2
1022
Normal
-0.2
286
Normal
-0.2
714
Normal
-0.2
571
Tumor
-0.2
142
Normal
-0.2
864
Normal
-0.2
1045
Tumor
-0.2
968
Normal
-0.2
617
Tumor
-0.2
557
Tumor
-0.2
1025
Tumor
-0.2
463
Tumor
-0.2
278
Normal
-0.2
554
Normal
-0.2
913
Tumor
-0.2
212
Normal
-0.2
412
Normal
-0.2
327
Tumor
-0.2
328
Normal
-0.2
857
Tumor
-0.2
956
Normal
-0.2
284
Normal
-0.2
741
Tumor
-0.2
146
Normal
-0.3
862
Normal
-0.3
817
Tumor
-0.3
915
Tumor
-0.3
526
Normal
-0.3
474
Normal
-0.3
938
Normal
-0.3
356
Normal
-0.3
965
Tumor
-0.3
756
Normal
-0.3
868
Normal
-0.3
516
Normal
-0.3
145
Tumor
-0.3
823
Tumor
-0.3
878
Normal
-0.3
778
Normal
-0.3
918
Normal
-0.3
137
Tumor
-0.3
1032
Normal
-0.3
958
Normal
-0.3
514
Normal
-0.3
916
Normal
-0.3
964
Normal
-0.3
975
Tumor
-0.3
924
Normal
-0.3
524
Normal
-0.3
355
Tumor
-0.4
723
Tumor
-0.4
922
Normal
-0.4
746
Normal
-0.4
364
Normal
-0.4
727
Tumor
-0.4
976
Normal
-0.4
416
Normal
-0.4
952
Normal
-0.4
525
Tumor
-0.5
963
Tumor
-0.5
363
Tumor
-0.5
431
Tumor
-0.5
957
Tumor
-0.5
536
Normal
-0.6
695
Tumor
-0.6
1042
Normal
-0.6
435
Tumor
-0.6
415
Tumor
-0.6
523
Tumor
-0.6
977
Tumor
-0.6
1013
Tumor
-0.7
697
Tumor
-0.7
921
Tumor
-0.7
131
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
