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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMTC2 is not prognostic in Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.3
Number of samples
283
Samples
Sample
Description
TPM
TCGA-Q1-A73R-01A
0 years, female, white, stage:Stage I, alive, 567 days
23.4
TCGA-VS-A9UL-01A
0 years, female, white, stage:Stage IIIB, dead, 442 days
18.2
TCGA-VS-A9V5-01A
0 years, female, white, stage:Stage IIB, dead, 494 days
15.7
TCGA-VS-A8QA-01A
0 years, female, stage:Stage IB, alive, 1099 days
14.3
TCGA-DS-A7WF-01A
0 years, female, stage:Stage IB, dead, 492 days
13.3
TCGA-VS-A9UP-01A
0 years, female, stage:Stage IIA, alive, 1444 days
12.0
TCGA-VS-A9UM-01A
0 years, female, black or african american, stage:Stage IVB, dead, 829 days
11.8
TCGA-C5-A7CJ-01A
0 years, female, white, stage:Stage IIA, dead, 3097 days
11.6
TCGA-VS-A9UJ-01A
0 years, female, stage:Stage IIB, dead, 52 days
11.6
TCGA-EA-A1QS-01A
0 years, female, white, stage:Stage IB, alive, 1203 days
11.2
TCGA-C5-A1MI-01A
0 years, female, white, stage:Stage IB, dead, 1083 days
11.1
TCGA-JW-AAVH-01A
0 years, female, white, stage:Stage IB, alive, 552 days
10.5
TCGA-FU-A3TQ-01A
0 years, female, white, stage:Stage IIIB, alive, 795 days
10.1
TCGA-C5-A901-01A
0 years, female, white, stage:'--, alive, 518 days
9.6
TCGA-DS-A7WH-01A
0 years, female, white, stage:Stage IB, alive, 533 days
9.2
TCGA-C5-A2M2-01A
0 years, female, white, stage:Stage IB, dead, 1011 days
9.2
TCGA-EA-A97N-01A
0 years, female, white, stage:Stage IB, alive, 11 days
8.7
TCGA-VS-A952-01A
0 years, female, white, stage:Stage IB, alive, 1778 days
8.3
TCGA-C5-A1ML-01A
0 years, female, white, stage:Stage IB, dead, 636 days
8.1
TCGA-FU-A2QG-01A
0 years, female, white, stage:Stage IB, alive, 579 days
8.0
TCGA-DG-A2KL-01A
0 years, female, stage:Stage IIA, alive, 1367 days
7.8
TCGA-LP-A7HU-01A
0 years, female, asian, stage:Stage II, alive, 406 days
7.8
TCGA-C5-A1M5-01A
0 years, female, white, stage:Stage IB, dead, 2052 days
7.7
TCGA-C5-A1MJ-01A
0 years, female, white, stage:Stage IB, dead, 14 days
7.6
TCGA-VS-A959-01A
0 years, female, stage:Stage IIB, alive, 1561 days
7.4
TCGA-PN-A8MA-01A
0 years, female, black or african american, stage:Stage IIB, alive, 90 days
7.1
TCGA-EA-A3HU-01A
0 years, female, white, stage:Stage II, alive, 1013 days
7.1
TCGA-FU-A3TX-01A
0 years, female, stage:Stage IB, alive, 45 days
7.1
TCGA-C5-A3HF-01A
0 years, female, white, stage:Stage IB, dead, 543 days
6.8
TCGA-XS-A8TJ-01A
0 years, female, black or african american, stage:Stage IB, alive, 890 days
6.8
TCGA-VS-A9UQ-01A
0 years, female, stage:Stage IB, alive, 1263 days
6.8
TCGA-DS-A1O9-01A
0 years, female, white, stage:Stage IVA, dead, 266 days
6.7
TCGA-VS-A8EG-01A
0 years, female, stage:Stage IB, alive, 1386 days
6.7
TCGA-VS-A9UR-01A
0 years, female, white, stage:Stage IIA, alive, 793 days
6.6
TCGA-EA-A5FO-01A
0 years, female, white, stage:Stage IB, alive, 815 days
6.5
TCGA-IR-A3LA-01A
0 years, female, white, stage:Stage IB, alive, 4172 days
6.4
TCGA-C5-A3HL-01A
0 years, female, white, stage:Stage IB, alive, 621 days
6.3
TCGA-EA-A3HS-01A
0 years, female, white, stage:Stage IB, alive, 959 days
6.2
TCGA-C5-A1BJ-01A
0 years, female, white, stage:Stage IIB, alive, 4385 days
6.2
TCGA-EA-A3HR-01A
0 years, female, white, stage:Stage II, alive, 940 days
6.1
TCGA-EX-A1H5-01A
0 years, female, black or african american, stage:Stage IIB, alive, 619 days
5.9
TCGA-C5-A8YT-01A
0 years, female, white, stage:Stage IB, dead, 633 days
5.8
TCGA-C5-A8XI-01A
0 years, female, black or african american, stage:Stage IB, alive, 254 days
5.7
TCGA-VS-A9UO-01A
0 years, female, white, stage:Stage IIB, alive, 1456 days
5.6
TCGA-MU-A8JM-01A
0 years, female, white, stage:Stage IB, alive, 607 days
5.6
TCGA-4J-AA1J-01A
0 years, female, white, stage:Stage IB, alive, 542 days
5.4
TCGA-EA-A3QE-01A
0 years, female, white, stage:Stage IB, alive, 761 days
5.3
TCGA-C5-A1MP-01A
0 years, female, black or african american, stage:Stage IB, alive, 109 days
5.3
TCGA-FU-A3HY-01A
0 years, female, white, stage:Stage IB, alive, 954 days
5.2
TCGA-C5-A8XJ-01A
0 years, female, white, stage:Stage IB, alive, 4467 days
5.1
TCGA-ZJ-AAXA-01A
0 years, female, white, stage:Stage IB, alive, 43 days
5.0
TCGA-Q1-A6DV-01A
0 years, female, asian, stage:Stage IB, alive, 491 days
5.0
TCGA-FU-A5XV-01A
0 years, female, white, stage:Stage IIIB, alive, 321 days
5.0
TCGA-C5-A1MH-01A
0 years, female, white, stage:Stage IIIB, dead, 1186 days
5.0
TCGA-C5-A7CO-01A
0 years, female, white, stage:Stage IB, alive, 4482 days
4.9
TCGA-MU-A5YI-01A
0 years, female, black or african american, stage:Stage IA, alive, 1053 days
4.9
TCGA-HM-A6W2-01A
0 years, female, black or african american, stage:Stage IVB, alive, 287 days
4.9
TCGA-C5-A1M6-01A
0 years, female, white, stage:Stage IIB, dead, 955 days
4.8
TCGA-FU-A57G-01A
0 years, female, white, stage:Stage IB, alive, 1078 days
4.8
TCGA-C5-A905-01A
0 years, female, black or african american, stage:Stage IB, alive, 4879 days
4.7
TCGA-C5-A1MK-01A
0 years, female, white, stage:Stage IIIB, dead, 74 days
4.7
TCGA-C5-A7CL-01A
0 years, female, white, stage:Stage IIIB, dead, 471 days
4.7
TCGA-C5-A7XC-01A
0 years, female, white, stage:Stage IB, alive, 1551 days
4.6
TCGA-HM-A4S6-01A
0 years, female, white, stage:Stage IIIB, alive, 454 days
4.6
TCGA-VS-A9UY-01A
0 years, female, stage:Stage IVB, dead, 555 days
4.5
TCGA-VS-A9UB-01A
0 years, female, stage:Stage IIB, alive, 911 days
4.5
TCGA-LP-A4AW-01A
0 years, female, asian, stage:Stage IA, alive, 27 days
4.5
TCGA-C5-A7CG-01A
0 years, female, white, stage:Stage IB, alive, 6408 days
4.4
TCGA-EK-A2R8-01A
0 years, female, white, stage:Stage IB, alive, 44 days
4.4
TCGA-LP-A4AU-01A
0 years, female, asian, stage:Stage IIIB, alive, 343 days
4.4
TCGA-EX-A449-01A
0 years, female, white, stage:Stage IVB, alive, 447 days
4.4
TCGA-MA-AA3W-01A
0 years, female, white, stage:Stage IB, alive, 685 days
4.4
TCGA-EK-A2PI-01A
0 years, female, white, stage:Stage IIIB, alive, 586 days
4.3
TCGA-C5-A2LZ-01A
0 years, female, white, stage:Stage IIIB, dead, 3046 days
4.3
TCGA-EK-A2RL-01A
0 years, female, black or african american, stage:Stage IB, dead, 1453 days
4.3
TCGA-C5-A1M9-01A
0 years, female, white, stage:Stage IB, dead, 1065 days
4.3
TCGA-Q1-A73P-01A
0 years, female, white, stage:Stage IB, alive, 483 days
4.2
TCGA-JX-A3Q8-01A
0 years, female, asian, stage:Stage IB, alive, 1357 days
4.2
TCGA-EK-A2RA-01A
0 years, female, stage:Stage IIA, alive, 1246 days
4.2
TCGA-DS-A1OD-01A
0 years, female, white, stage:Stage IB, alive, 3874 days
4.2
TCGA-C5-A7UC-01A
0 years, female, white, stage:Stage IB, dead, 523 days
4.2
TCGA-HG-A2PA-01A
0 years, female, white, stage:Stage IB, dead, 773 days
4.2
TCGA-FU-A3WB-01A
0 years, female, white, stage:Stage IIA, alive, 491 days
4.2
TCGA-EK-A2R9-01A
0 years, female, white, stage:Stage IB, alive, 4 days
4.1
TCGA-IR-A3LB-01A
0 years, female, white, stage:Stage IB, dead, 2032 days
4.0
TCGA-WL-A834-01A
0 years, female, white, stage:'--, alive, 791 days
4.0
TCGA-FU-A23K-01A
0 years, female, white, stage:Stage IIIB, alive, 372 days
3.9
TCGA-EX-A3L1-01A
0 years, female, white, stage:Stage IIA, alive, 463 days
3.9
TCGA-JX-A5QV-01A
0 years, female, white, stage:Stage IB, alive, 636 days
3.9
TCGA-EA-A1QT-01A
0 years, female, white, stage:Stage IB, alive, 1243 days
3.9
TCGA-MA-AA3Z-01A
0 years, female, white, stage:Stage IB, alive, 595 days
3.9
TCGA-UC-A7PG-01A
0 years, female, white, stage:Stage IIIB, dead, 370 days
3.8
TCGA-VS-A9UI-01A
0 years, female, white, stage:Stage IIB, dead, 1372 days
3.7
TCGA-JX-A3Q0-01A
0 years, female, black or african american, stage:Stage III, alive, 6375 days
3.7
TCGA-C5-A2LS-01A
0 years, female, white, stage:Stage IB, alive, 1345 days
3.7
TCGA-C5-A7CK-01A
0 years, female, white, stage:Stage IVA, dead, 4086 days
3.6
TCGA-2W-A8YY-01A
0 years, female, white, stage:Stage IB, alive, 533 days
3.6
TCGA-IR-A3LF-01A
0 years, female, white, stage:Stage IB, alive, 2949 days
3.6
TCGA-Q1-A6DW-01A
0 years, female, white, stage:Stage I, alive, 534 days
3.6
TCGA-C5-A1BM-01A
0 years, female, black or african american, stage:Stage IB, dead, 2520 days
3.5
TCGA-ZJ-AAX4-01A
0 years, female, white, stage:Stage II, alive, 21 days
3.5
TCGA-C5-A1BL-01A
0 years, female, white, stage:Stage IB, alive, 5271 days
3.5
TCGA-VS-A8QM-01A
0 years, female, stage:Stage IVB, dead, 951 days
3.5
TCGA-DS-A7WI-01A
0 years, female, white, stage:Stage IIA, dead, 252 days
3.4
TCGA-EA-A439-01A
0 years, female, asian, stage:Stage IIA, alive, 965 days
3.4
TCGA-BI-A0VR-01A
0 years, female, white, stage:Stage IIIB, alive, 1505 days
3.4
TCGA-HM-A3JK-01A
0 years, female, white, stage:Stage IIA, alive, 632 days
3.4
TCGA-VS-A8QH-01A
0 years, female, white, stage:Stage IB, dead, 1210 days
3.3
TCGA-VS-A8EK-01A
0 years, female, white, stage:Stage IVA, dead, 829 days
3.3
TCGA-VS-A9UZ-01A
0 years, female, white, stage:Stage IB, alive, 2044 days
3.3
TCGA-MY-A5BF-01A
0 years, female, white, stage:Stage IIA, alive, 634 days
3.3
TCGA-MU-A51Y-01A
0 years, female, white, stage:Stage IIA, alive, 854 days
3.3
TCGA-C5-A1M7-01A
0 years, female, white, stage:Stage IB, alive, 1409 days
3.3
TCGA-HM-A3JJ-01A
0 years, female, black or african american, stage:Stage IB, dead, 659 days
3.3
TCGA-EK-A2RO-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 2 days
3.2
TCGA-FU-A3YQ-01A
0 years, female, white, stage:Stage IB, alive, 861 days
3.2
TCGA-EK-A3GK-01A
0 years, female, white, stage:Stage IB, alive, 15 days
3.2
TCGA-MA-AA3X-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 617 days
3.2
TCGA-LP-A4AX-01A
0 years, female, asian, stage:Stage IB, alive, 380 days
3.2
TCGA-JW-A69B-01A
0 years, female, white, stage:Stage IB, alive, 863 days
3.2
TCGA-Q1-A73O-01A
0 years, female, stage:Stage IB, alive, 428 days
3.2
TCGA-DS-A5RQ-01A
0 years, female, white, stage:Stage IB, alive, 512 days
3.2
TCGA-VS-A9V1-01A
0 years, female, white, stage:Stage IVB, dead, 157 days
3.1
TCGA-EA-A6QX-01A
0 years, female, asian, stage:Stage IIIB, alive, 730 days
3.1
TCGA-JW-A5VH-01A
0 years, female, american indian or alaska native, stage:Stage IVB, dead, 100 days
3.0
TCGA-Q1-A5R1-01A
0 years, female, white, stage:Stage IB, alive, 474 days
3.0
TCGA-MY-A5BD-01A
0 years, female, white, stage:Stage IIB, alive, 1667 days
3.0
TCGA-EK-A2PM-01A
0 years, female, white, stage:Stage IIB, alive, 18 days
3.0
TCGA-VS-A9UC-01A
0 years, female, stage:Stage IIB, alive, 825 days
3.0
TCGA-VS-A9V3-01A
0 years, female, white, stage:Stage IVB, alive, 540 days
2.9
TCGA-EA-A556-01A
0 years, female, white, stage:Stage IB, alive, 453 days
2.9
TCGA-EK-A2RC-01A
0 years, female, stage:Stage IB, alive, 129 days
2.9
TCGA-DG-A2KM-01A
0 years, female, stage:Stage IB, alive, 1946 days
2.9
TCGA-Q1-A73S-01A
0 years, female, white, stage:Stage IB, alive, 688 days
2.9
TCGA-UC-A7PD-01A
0 years, female, american indian or alaska native, stage:Stage IB, dead, 355 days
2.9
TCGA-DG-A2KK-01A
0 years, female, stage:Stage IIIB, alive, 2496 days
2.9
TCGA-EA-A5ZD-01A
0 years, female, asian, stage:Stage IB, alive, 830 days
2.9
TCGA-JW-A5VI-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 747 days
2.9
TCGA-EX-A8YF-01A
0 years, female, white, stage:Stage IB, alive, 473 days
2.8
TCGA-DS-A0VK-01A
0 years, female, white, stage:Stage IB, dead, 1118 days
2.7
TCGA-DS-A1OC-01A
0 years, female, white, stage:Stage IB, alive, 376 days
2.7
TCGA-VS-A958-01A
0 years, female, white, stage:Stage IIB, alive, 1525 days
2.7
TCGA-EK-A2RJ-01A
0 years, female, white, stage:Stage IB, alive, 53 days
2.7
TCGA-EA-A3HT-01A
0 years, female, white, stage:Stage IB, alive, 954 days
2.6
TCGA-MY-A913-01A
0 years, female, black or african american, stage:Stage IIA, alive, 524 days
2.6
TCGA-DR-A0ZL-01A
0 years, female, asian, stage:Stage IB, alive, 2669 days
2.6
TCGA-VS-A9UT-01A
0 years, female, asian, stage:Stage IB, alive, 482 days
2.5
TCGA-JW-A5VG-01A
0 years, female, american indian or alaska native, stage:Stage IIA, alive, 834 days
2.5
TCGA-EA-A5ZE-01A
0 years, female, asian, stage:Stage IB, alive, 829 days
2.5
TCGA-BI-A0VS-01A
0 years, female, white, stage:Stage IB, alive, 1735 days
2.5
TCGA-DS-A1OA-01A
0 years, female, asian, stage:Stage IB, dead, 879 days
2.5
TCGA-EK-A2RM-01A
0 years, female, white, stage:Stage IB, alive, 50 days
2.5
TCGA-DS-A0VL-01A
0 years, female, white, stage:Stage IB, dead, 1692 days
2.5
TCGA-EA-A44S-01A
0 years, female, white, stage:Stage IIIB, alive, 369 days
2.4
TCGA-DG-A2KH-01A
0 years, female, stage:Stage IB, alive, 34 days
2.4
TCGA-EA-A4BA-01A
0 years, female, white, stage:Stage IB, alive, 755 days
2.4
TCGA-EK-A2RK-01A
0 years, female, white, stage:Stage IA, alive, 13 days
2.4
TCGA-EA-A410-01A
0 years, female, white, stage:Stage IIA, alive, 803 days
2.4
TCGA-UC-A7PI-01A
0 years, female, white, stage:Stage IB, alive, 2114 days
2.4
TCGA-ZX-AA5X-01A
0 years, female, white, stage:Stage IIIB, alive, 119 days
2.3
TCGA-ZJ-A8QR-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage I, dead, 582 days
2.3
TCGA-EK-A2IP-01A
0 years, female, white, stage:Stage IB, alive, 202 days
2.3
TCGA-IR-A3LK-01A
0 years, female, white, stage:Stage IB, dead, 908 days
2.3
TCGA-LP-A5U2-01A
0 years, female, asian, stage:Stage IIIB, alive, 9 days
2.3
TCGA-DR-A0ZM-01A
0 years, female, white, stage:Stage IIIB, alive, 1791 days
2.3
TCGA-VS-AA62-01A
0 years, female, white, stage:Stage IIB, dead, 469 days
2.3
TCGA-FU-A23L-01A
0 years, female, white, stage:Stage IIA, alive, 725 days
2.2
TCGA-MA-AA42-01A
0 years, female, white, stage:Stage IIB, alive, 259 days
2.2
TCGA-BI-A20A-01A
0 years, female, white, stage:Stage IB, alive, 720 days
2.2
TCGA-VS-A9U7-01A
0 years, female, white, stage:Stage IB, alive, 1472 days
2.2
TCGA-VS-A9V4-01A
0 years, female, white, stage:Stage IVA, dead, 132 days
2.2
TCGA-DS-A1OB-01A
0 years, female, white, stage:Stage IB, dead, 861 days
2.1
TCGA-FU-A770-01A
0 years, female, white, stage:Stage IIIB, alive, 34 days
2.1
TCGA-EK-A2R7-01A
0 years, female, white, stage:Stage IB, alive, 27 days
2.1
TCGA-MA-AA43-01A
0 years, female, white, stage:Stage IIIB, alive, 346 days
2.0
TCGA-JW-A5VK-01A
0 years, female, black or african american, stage:Stage IB, alive, 623 days
2.0
TCGA-JW-A5VJ-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 652 days
2.0
TCGA-UC-A7PF-01A
0 years, female, stage:Stage IB, dead, 2859 days
2.0
TCGA-C5-A1M8-01A
0 years, female, white, stage:Stage IB, alive, 919 days
2.0
TCGA-DS-A3LQ-01A
0 years, female, stage:Stage IIIB, alive, 699 days
1.9
TCGA-C5-A7CH-01A
0 years, female, white, stage:Stage IIB, alive, 4694 days
1.9
TCGA-EK-A2RE-01A
0 years, female, white, stage:Stage IIA, alive, 57 days
1.9
TCGA-VS-A9V2-01A
0 years, female, white, stage:Stage IB, alive, 555 days
1.9
TCGA-LP-A5U3-01A
0 years, female, asian, stage:Stage IB, alive, 25 days
1.9
TCGA-VS-A8EI-01A
0 years, female, white, stage:Stage IIB, alive, 729 days
1.8
TCGA-IR-A3LI-01A
0 years, female, white, stage:Stage IVB, alive, 2493 days
1.8
TCGA-VS-A954-01A
0 years, female, stage:Stage IIIB, alive, 1714 days
1.8
TCGA-FU-A40J-01A
0 years, female, white, stage:Stage IIIB, alive, 426 days
1.8
TCGA-EA-A3HQ-01A
0 years, female, white, stage:Stage II, alive, 1136 days
1.8
TCGA-EA-A50E-01A
0 years, female, asian, stage:Stage IVA, dead, 227 days
1.8
TCGA-VS-A8EL-01A
0 years, female, black or african american, stage:Stage IIB, alive, 1992 days
1.8
TCGA-JW-A5VL-01A
0 years, female, american indian or alaska native, stage:Stage IB, alive, 474 days
1.8
TCGA-VS-A8QF-01A
0 years, female, white, stage:Stage IIB, alive, 1800 days
1.8
TCGA-EK-A2RN-01A
0 years, female, white, stage:Stage IB, alive, 71 days
1.7
TCGA-C5-A2LX-01A
0 years, female, white, stage:Stage IB, alive, 2526 days
1.7
TCGA-C5-A8YR-01A
0 years, female, white, stage:Stage IB, dead, 837 days
1.7
TCGA-Q1-A5R3-01A
0 years, female, white, stage:'--, alive, 485 days
1.7
TCGA-EA-A43B-01A
0 years, female, white, stage:Stage IB, alive, 791 days
1.7
TCGA-C5-A2LT-01A
0 years, female, white, stage:Stage IB, alive, 2226 days
1.7
TCGA-C5-A8XK-01A
0 years, female, black or african american, stage:'--, alive, 3039 days
1.7
TCGA-VS-A94Z-01A
0 years, female, white, stage:Stage IIB, alive, 1015 days
1.6
TCGA-MY-A5BE-01A
0 years, female, black or african american, stage:Stage IB, alive, 1066 days
1.6
TCGA-EK-A2IR-01A
0 years, female, white, stage:Stage IB, alive, 3442 days
1.6
TCGA-C5-A7UH-01A
0 years, female, white, stage:Stage IIIB, alive, 3988 days
1.6
TCGA-VS-A9UV-01A
0 years, female, stage:Stage IVA, dead, 104 days
1.5
TCGA-EK-A2H1-01A
0 years, female, white, stage:Stage IB, alive, 799 days
1.5
TCGA-EK-A3GJ-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IB, alive, 3 days
1.5
TCGA-EA-A3QD-01A
0 years, female, white, stage:Stage IIIB, alive, 397 days
1.5
TCGA-C5-A7X8-01A
0 years, female, white, stage:Stage IB, alive, 83 days
1.5
TCGA-C5-A8XH-01A
0 years, female, white, stage:Stage IB, dead, 1394 days
1.5
TCGA-EK-A2PL-01A
0 years, female, white, stage:Stage IIIB, alive, 13 days
1.4
TCGA-VS-A8Q8-01A
0 years, female, white, stage:Stage IB, dead, 978 days
1.4
TCGA-VS-A8QC-01A
0 years, female, white, stage:Stage IVA, dead, 350 days
1.4
TCGA-C5-A8ZZ-01A
0 years, female, white, stage:Stage IIB, alive, 636 days
1.4
TCGA-C5-A2M1-01A
0 years, female, white, stage:Stage IB, alive, 1169 days
1.4
TCGA-VS-A950-01A
0 years, female, stage:Stage IIIA, alive, 1221 days
1.3
TCGA-C5-A7UE-01A
0 years, female, white, stage:Stage IB, alive, 4738 days
1.3
TCGA-EA-A411-01A
0 years, female, white, stage:Stage IB, alive, 747 days
1.3
TCGA-EK-A2RB-01A
0 years, female, white, stage:Stage IVB, alive, 9 days
1.3
TCGA-JX-A3PZ-01A
0 years, female, white, stage:Stage IB, dead, 642 days
1.2
TCGA-EK-A2PG-01A
0 years, female, black or african american, stage:'--, alive, 46 days
1.2
TCGA-Q1-A73Q-01A
0 years, female, white, stage:Stage I, alive, 284 days
1.2
TCGA-EA-A78R-01A
0 years, female, asian, stage:Stage IB, alive, 410 days
1.2
TCGA-VS-A9U6-01A
0 years, female, white, stage:Stage IVB, alive, 1320 days
1.1
TCGA-DS-A0VN-01A
0 years, female, white, stage:Stage IB, alive, 3609 days
1.1
TCGA-C5-A2LY-01A
0 years, female, white, stage:Stage IB, alive, 2383 days
1.1
TCGA-EX-A69L-01A
0 years, female, asian, stage:Stage IB, alive, 602 days
1.1
TCGA-EK-A2H0-01A
0 years, female, white, stage:Stage IIB, alive, 1847 days
1.0
TCGA-EK-A2GZ-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 383 days
1.0
TCGA-ZJ-AAXU-01A
0 years, female, white, stage:Stage IIB, alive, 5 days
1.0
TCGA-C5-A1MN-01A
0 years, female, white, stage:Stage IIIB, dead, 1245 days
1.0
TCGA-C5-A8YQ-01A
0 years, female, white, stage:Stage IB, dead, 715 days
1.0
TCGA-C5-A2LV-01A
0 years, female, black or african american, stage:Stage IB, alive, 2234 days
1.0
TCGA-C5-A3HE-01A
0 years, female, white, stage:Stage IB, alive, 548 days
1.0
TCGA-VS-A953-01A
0 years, female, stage:Stage IVA, dead, 477 days
0.9
TCGA-C5-A907-01A
0 years, female, white, stage:Stage IB, alive, 448 days
0.9
TCGA-C5-A7UI-01A
0 years, female, black or african american, stage:Stage IB, dead, 2888 days
0.9
TCGA-R2-A69V-01A
0 years, female, white, stage:Stage IB, alive, 596 days
0.9
TCGA-C5-A902-01A
0 years, female, black or african american, stage:Stage IB, alive, 149 days
0.9
TCGA-IR-A3LL-01A
0 years, female, white, stage:Stage IB, alive, 1106 days
0.8
TCGA-EK-A2PK-01A
0 years, female, white, stage:Stage IB, alive, 12 days
0.7
TCGA-VS-A9UD-01A
0 years, female, white, stage:Stage IIIA, alive, 739 days
0.6
TCGA-Q1-A5R2-01A
0 years, female, white, stage:'--, alive, 499 days
0.6
TCGA-VS-A9UH-01A
0 years, female, black or african american, stage:Stage IVA, alive, 1427 days
0.6
TCGA-RA-A741-01A
0 years, female, white, stage:Stage IIB, alive, 444 days
0.6
TCGA-VS-A8EC-01A
0 years, female, white, stage:Stage IIIB, alive, 1415 days
0.5
TCGA-VS-A8Q9-01A
0 years, female, white, stage:Stage IB, alive, 1630 days
0.5
TCGA-C5-A7X3-01A
0 years, female, white, stage:Stage IIIB, dead, 284 days
0.5
TCGA-FU-A3EO-01A
0 years, female, white, stage:Stage IIB, alive, 490 days
0.5
TCGA-VS-A94Y-01A
0 years, female, white, stage:Stage IIB, dead, 144 days
0.5
TCGA-EA-A3Y4-01A
0 years, female, white, stage:Stage IB, alive, 1122 days
0.5
TCGA-C5-A1MQ-01A
0 years, female, white, stage:Stage IIA, alive, 1031 days
0.3
TCGA-C5-A1MF-01A
0 years, female, white, stage:Stage IB, alive, 1617 days
0.3
TCGA-EK-A3GN-01A
0 years, female, white, stage:Stage IIIB, alive, 27 days
0.2
TCGA-DS-A0VM-01A
0 years, female, white, stage:Stage IB, alive, 3589 days
0.2
TCGA-ZJ-A8QQ-01A
0 years, female, white, stage:Stage IIB, alive, 2056 days
0.0
TCGA-EA-A5O9-01A
0 years, female, white, stage:Stage IB, alive, 788 days
0.0
TCGA-C5-A7X5-01A
0 years, female, black or african american, stage:Stage IVB, dead, 414 days
0.0
TCGA-VS-A9UU-01A
0 years, female, stage:Stage IIB, alive, 442 days
0.0
TCGA-EA-A5ZF-01A
0 years, female, asian, stage:Stage IB, alive, 828 days
0.0
TCGA-IR-A3L7-01A
0 years, female, white, stage:Stage IB, alive, 4483 days
0.0
TCGA-FU-A3NI-01A
0 years, female, white, stage:Stage IB, dead, 638 days
0.0
TCGA-VS-A94X-01A
0 years, female, black or african american, stage:Stage IIB, dead, 506 days
0.0
TCGA-GH-A9DA-01A
0 years, female, white, stage:Stage IB, alive, 540 days
0.0
TCGA-C5-A7CM-01A
0 years, female, white, stage:Stage IB, alive, 619 days
0.0
TCGA-VS-A8EJ-01A
0 years, female, white, stage:Stage IIB, dead, 607 days
0.0
TCGA-MA-AA3Y-01A
0 years, female, white, stage:Stage IB, alive, 542 days
0.0
TCGA-VS-A8EH-01A
0 years, female, stage:Stage IIIB, alive, 986 days
0.0
TCGA-C5-A0TN-01A
0 years, female, black or african american, stage:Stage IB, dead, 348 days
0.0
TCGA-IR-A3LC-01A
0 years, female, white, stage:Stage IB, alive, 3935 days
0.0
TCGA-IR-A3LH-01A
0 years, female, black or african american, stage:Stage IIA, alive, 2394 days
0.0
TCGA-VS-A8EB-01A
0 years, female, white, stage:Stage IIIB, dead, 305 days
0.0
TCGA-FU-A3HZ-01A
0 years, female, white, stage:Stage IIA, alive, 1103 days
0.0
TCGA-MA-AA41-01A
0 years, female, white, stage:Stage IIB, alive, 279 days
0.0
TCGA-Q1-A6DT-01A
0 years, female, white, stage:Stage I, dead, 275 days
0.0
TCGA-DG-A2KJ-01A
0 years, female, stage:Stage IIIB, alive, 2893 days
0.0
TCGA-VS-A94W-01A
0 years, female, white, stage:Stage IIB, alive, 1243 days
0.0
TCGA-EX-A69M-01A
0 years, female, white, stage:Stage IB, dead, 253 days
0.0
TCGA-JW-A852-01A
0 years, female, white, stage:Stage IIB, dead, 252 days
0.0
TCGA-VS-A9U5-01A
0 years, female, white, stage:Stage IIB, alive, 1535 days
0.0
TCGA-VS-A957-01A
0 years, female, white, stage:Stage IB, alive, 1688 days
0.0
TCGA-C5-A1ME-01A
0 years, female, white, stage:Stage IB, alive, 1756 days
0.0
TCGA-VS-A9V0-01A
0 years, female, stage:Stage IB, alive, 573 days
0.0
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CERVICAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
