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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCC2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCC2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.6
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
98.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
72.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
70.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
68.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
66.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
64.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
49.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
49.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
46.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
34.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.9
965
Tumor
1.8
211
Tumor
1.5
283
Tumor
1.4
385
Tumor
1.2
131
Tumor
1.1
743
Tumor
1.1
943
Tumor
1.1
351
Tumor
1.1
497
Tumor
1.0
951
Tumor
1.0
917
Tumor
1.0
355
Tumor
1.0
877
Tumor
0.9
573
Tumor
0.9
413
Tumor
0.9
953
Tumor
0.8
545
Tumor
0.8
695
Tumor
0.8
375
Tumor
0.8
724
Normal
0.7
1021
Tumor
0.7
567
Tumor
0.7
343
Tumor
0.7
1013
Tumor
0.7
161
Tumor
0.7
535
Tumor
0.7
493
Tumor
0.6
671
Tumor
0.6
425
Tumor
0.6
277
Tumor
0.6
865
Tumor
0.6
813
Tumor
0.6
331
Tumor
0.6
357
Tumor
0.6
814
Normal
0.6
817
Tumor
0.6
427
Tumor
0.6
447
Tumor
0.6
525
Tumor
0.6
883
Tumor
0.5
285
Tumor
0.5
533
Tumor
0.5
881
Tumor
0.5
311
Tumor
0.5
923
Tumor
0.5
983
Tumor
0.5
367
Tumor
0.5
313
Tumor
0.5
727
Tumor
0.4
473
Tumor
0.4
492
Normal
0.4
463
Tumor
0.4
297
Tumor
0.4
433
Tumor
0.4
213
Tumor
0.4
967
Tumor
0.4
963
Tumor
0.4
411
Tumor
0.4
537
Tumor
0.4
663
Tumor
0.4
491
Tumor
0.4
1031
Tumor
0.4
185
Tumor
0.3
125
Tumor
0.3
455
Tumor
0.3
461
Tumor
0.3
391
Tumor
0.3
975
Tumor
0.3
823
Tumor
0.3
815
Tumor
0.3
571
Tumor
0.3
536
Normal
0.3
977
Tumor
0.3
737
Tumor
0.3
487
Tumor
0.3
395
Tumor
0.3
713
Tumor
0.3
435
Tumor
0.2
916
Normal
0.2
444
Normal
0.2
517
Tumor
0.2
478
Normal
0.2
557
Tumor
0.2
434
Normal
0.2
467
Tumor
0.2
483
Tumor
0.2
141
Tumor
0.2
383
Tumor
0.2
861
Tumor
0.2
267
Tumor
0.2
135
Tumor
0.2
268
Normal
0.1
498
Normal
0.1
171
Tumor
0.1
538
Normal
0.1
957
Tumor
0.1
217
Tumor
0.1
527
Tumor
0.1
192
Normal
0.1
227
Tumor
0.1
857
Tumor
0.1
188
Normal
0.1
697
Tumor
0.1
524
Normal
0.1
112
Tumor
0.1
966
Normal
0.1
721
Tumor
0.0
231
Tumor
0.0
387
Tumor
0.0
312
Normal
0.0
471
Tumor
0.0
187
Tumor
0.0
223
Tumor
0.0
1015
Tumor
0.0
195
Tumor
0.0
363
Tumor
0.0
224
Normal
0.0
386
Normal
0.0
976
Normal
0.0
685
Tumor
-0.1
978
Normal
-0.1
913
Tumor
-0.1
212
Normal
-0.1
874
Normal
-0.1
384
Normal
-0.1
851
Tumor
-0.1
641
Tumor
-0.1
146
Normal
-0.1
563
Tumor
-0.1
465
Tumor
-0.1
662
Normal
-0.1
262
Normal
-0.1
421
Tumor
-0.1
257
Tumor
-0.1
956
Normal
-0.2
921
Tumor
-0.2
365
Tumor
-0.2
284
Normal
-0.2
332
Normal
-0.2
715
Tumor
-0.2
423
Tumor
-0.2
113
Tumor
-0.2
852
Normal
-0.2
553
Tumor
-0.2
523
Tumor
-0.2
937
Tumor
-0.2
126
Normal
-0.2
361
Tumor
-0.2
341
Tumor
-0.2
445
Tumor
-0.2
352
Normal
-0.2
516
Normal
-0.2
925
Tumor
-0.2
617
Tumor
-0.2
952
Normal
-0.2
984
Normal
-0.2
1044
Normal
-0.2
271
Tumor
-0.2
477
Tumor
-0.2
1043
Tumor
-0.2
147
Tumor
-0.2
278
Normal
-0.2
1028
Normal
-0.2
415
Tumor
-0.2
1025
Tumor
-0.3
958
Normal
-0.3
138
Normal
-0.3
261
Tumor
-0.3
665
Tumor
-0.3
924
Normal
-0.3
443
Tumor
-0.3
272
Normal
-0.3
515
Tumor
-0.3
554
Normal
-0.3
785
Tumor
-0.3
672
Normal
-0.3
314
Normal
-0.3
1042
Normal
-0.3
968
Normal
-0.3
938
Normal
-0.3
686
Normal
-0.3
488
Normal
-0.3
494
Normal
-0.3
954
Normal
-0.3
364
Normal
-0.3
873
Tumor
-0.3
393
Tumor
-0.3
221
Tumor
-0.3
451
Tumor
-0.4
1016
Normal
-0.4
546
Normal
-0.4
362
Normal
-0.4
816
Normal
-0.4
344
Normal
-0.4
867
Tumor
-0.4
354
Normal
-0.4
1027
Tumor
-0.4
738
Normal
-0.4
298
Normal
-0.4
716
Normal
-0.4
396
Normal
-0.4
982
Normal
-0.4
1041
Tumor
-0.4
474
Normal
-0.4
431
Tumor
-0.4
574
Normal
-0.4
964
Normal
-0.4
558
Normal
-0.4
191
Tumor
-0.4
228
Normal
-0.4
866
Normal
-0.4
142
Normal
-0.4
416
Normal
-0.4
392
Normal
-0.4
218
Normal
-0.4
446
Normal
-0.4
918
Normal
-0.4
136
Normal
-0.4
862
Normal
-0.4
878
Normal
-0.4
172
Normal
-0.4
868
Normal
-0.4
412
Normal
-0.4
328
Normal
-0.4
388
Normal
-0.4
863
Tumor
-0.4
342
Normal
-0.4
214
Normal
-0.4
778
Normal
-0.4
137
Tumor
-0.4
756
Normal
-0.4
422
Normal
-0.4
884
Normal
-0.4
744
Normal
-0.4
664
Normal
-0.5
628
Normal
-0.5
647
Tumor
-0.5
472
Normal
-0.5
432
Normal
-0.5
722
Normal
-0.5
1032
Normal
-0.5
1045
Tumor
-0.5
366
Normal
-0.5
777
Tumor
-0.5
696
Normal
-0.5
513
Tumor
-0.5
286
Normal
-0.5
114
Normal
-0.5
955
Tumor
-0.5
186
Normal
-0.5
162
Normal
-0.5
1046
Normal
-0.5
124
Normal
-0.5
145
Tumor
-0.5
456
Normal
-0.5
528
Normal
-0.5
394
Normal
-0.5
666
Normal
-0.5
534
Normal
-0.5
462
Normal
-0.5
926
Normal
-0.5
864
Normal
-0.5
424
Normal
-0.5
148
Normal
-0.5
358
Normal
-0.5
356
Normal
-0.5
428
Normal
-0.5
518
Normal
-0.5
944
Normal
-0.5
1014
Normal
-0.5
914
Normal
-0.5
353
Tumor
-0.5
714
Normal
-0.5
882
Normal
-0.5
123
Tumor
-0.5
922
Normal
-0.5
1026
Normal
-0.5
258
Normal
-0.5
728
Normal
-0.6
755
Tumor
-0.6
132
Normal
-0.6
327
Tumor
-0.6
414
Normal
-0.6
635
Tumor
-0.6
468
Normal
-0.6
1022
Normal
-0.6
786
Normal
-0.6
448
Normal
-0.6
127
Tumor
-0.6
572
Normal
-0.6
514
Normal
-0.6
482
Normal
-0.6
464
Normal
-0.6
484
Normal
-0.6
111
Normal
-0.6
698
Normal
-0.6
741
Tumor
-0.6
818
Normal
-0.6
915
Tumor
-0.6
648
Normal
-0.7
858
Normal
-0.7
824
Normal
-0.7
564
Normal
-0.7
723
Tumor
-0.7
128
Normal
-0.7
376
Normal
-0.7
742
Normal
-0.7
426
Normal
-0.7
436
Normal
-0.7
568
Normal
-0.7
466
Normal
-0.7
368
Normal
-0.7
452
Normal
-0.7
912
Normal
-0.7
526
Normal
-0.7
196
Normal
-0.7
222
Normal
-0.7
481
Tumor
-0.7
232
Normal
-0.7
981
Tumor
-0.8
911
Tumor
-0.8
746
Normal
-0.8
627
Tumor
-0.8
745
Tumor
-0.9
642
Normal
-1.0
616
Normal
-1.0
615
Tumor
-1.0
636
Normal
-1.1
618
Normal
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
