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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRFAP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
158.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
405.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
374.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
373.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
340.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
339.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
324.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
322.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
315.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
309.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
299.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
297.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
296.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
295.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
281.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
274.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
273.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
269.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
268.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
267.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
266.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
265.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
265.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
263.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
262.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
262.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
258.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
257.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
256.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
256.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
255.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
254.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
253.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
250.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
249.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
248.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
247.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
247.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
244.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
244.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
244.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
240.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
240.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
240.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
237.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
235.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
234.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
234.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
230.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
227.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
225.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
224.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
223.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
223.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
221.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
215.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
215.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
214.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
211.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
209.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
208.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
207.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
206.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
205.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
203.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
203.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
203.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
202.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
201.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
201.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
201.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
200.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
199.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
199.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
199.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
198.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
198.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
197.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
196.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
195.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
195.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
194.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
194.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
194.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
193.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
193.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
192.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
191.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
191.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
190.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
190.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
187.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
186.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
186.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
185.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
184.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
184.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
183.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
183.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
183.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
182.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
179.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
178.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
177.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
177.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
176.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
176.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
176.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
175.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
175.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
174.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
173.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
172.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
172.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
172.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
172.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
172.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
172.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
172.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
171.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
170.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
170.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
170.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
170.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
169.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
169.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
169.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
169.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
169.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
167.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
167.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
167.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
167.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
166.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
166.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
166.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
166.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
165.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
165.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
165.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
164.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
164.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
164.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
164.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
163.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
162.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
162.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
162.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
162.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
162.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
162.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
161.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
161.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
160.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
160.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
159.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
159.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
158.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
158.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
158.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
157.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
157.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
157.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
157.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
157.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
156.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
155.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
155.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
155.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
155.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
155.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
155.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
154.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
154.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
153.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
153.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
152.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
152.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
151.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
151.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
151.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
150.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
150.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
150.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
149.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
149.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
148.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
148.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
148.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
147.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
147.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
147.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
146.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
145.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
145.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
145.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
145.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
145.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
144.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
144.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
143.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
143.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
143.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
142.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
142.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
142.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
141.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
140.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
140.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
140.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
140.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
140.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
140.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
139.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
138.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
138.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
138.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
138.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
137.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
137.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
137.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
136.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
135.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
135.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
135.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
135.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
135.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
134.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
134.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
133.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
133.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
133.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
133.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
132.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
132.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
132.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
132.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
132.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
131.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
131.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
130.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
129.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
129.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
129.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
129.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
128.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
128.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
128.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
127.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
127.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
127.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
126.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
126.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
126.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
126.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
125.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
125.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
123.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
123.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
123.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
123.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
122.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
122.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
121.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
121.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
121.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
121.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
121.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
120.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
120.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
119.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
119.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
118.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
118.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
118.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
117.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
117.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
116.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
116.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
116.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
115.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
114.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
113.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
113.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
112.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
112.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
112.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
111.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
111.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
111.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
111.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
110.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
110.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
109.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
109.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
109.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
109.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
107.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
105.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
104.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
103.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
103.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
103.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
102.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
102.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
101.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
99.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
99.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
99.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
98.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
98.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
98.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
98.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
98.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
98.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
97.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
97.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
96.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
96.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
95.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
95.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
94.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
94.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
92.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
89.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
89.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
89.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
89.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
89.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
88.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
88.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
88.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
87.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
85.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
85.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
84.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
81.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
80.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
79.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
79.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
79.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
78.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
78.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
78.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
76.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
75.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
73.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
73.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
72.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
72.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
72.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
70.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
69.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
68.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
64.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
64.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
61.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
60.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
58.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
55.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
55.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
43.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRFAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
158.9
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
471.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
384.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
306.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
297.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
273.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
273.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
272.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
264.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
263.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
259.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
252.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
251.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
249.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
248.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
248.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
247.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
245.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
242.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
241.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
241.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
241.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
239.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
237.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
237.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
232.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
232.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
232.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
228.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
225.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
225.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
222.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
219.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
216.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
215.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
213.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
212.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
211.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
210.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
208.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
203.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
203.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
203.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
202.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
201.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
200.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
200.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
198.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
198.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
196.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
194.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
192.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
191.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
191.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
188.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
188.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
188.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
188.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
187.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
185.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
182.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
182.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
182.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
182.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
181.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
181.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
181.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
180.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
178.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
177.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
177.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
175.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
174.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
173.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
173.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
173.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
172.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
172.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
171.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
169.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
169.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
168.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
168.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
168.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
166.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
166.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
166.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
165.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
165.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
163.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
163.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
162.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
161.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
161.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
159.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
159.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
158.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
158.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
157.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
157.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
156.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
156.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
156.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
155.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
155.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
155.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
154.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
154.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
153.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
153.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
151.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
150.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
150.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
150.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
150.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
149.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
149.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
148.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
148.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
147.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
147.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
146.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
145.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
145.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
145.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
144.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
143.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
143.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
142.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
142.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
141.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
140.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
140.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
140.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
140.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
140.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
140.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
140.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
140.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
140.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
138.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
138.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
138.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
137.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
137.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
137.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
136.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
136.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
135.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
135.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
133.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
133.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
133.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
132.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
131.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
130.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
130.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
129.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
129.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
129.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
128.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
128.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
128.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
127.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
127.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
126.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
126.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
125.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
125.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
125.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
123.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
122.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
120.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
119.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
119.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
119.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
119.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
118.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
118.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
117.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
116.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
115.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
114.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
114.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
113.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
113.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
113.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
112.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
112.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
112.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
111.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
111.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
111.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
111.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
110.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
109.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
108.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
107.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
105.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
105.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
105.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
104.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
104.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
104.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
104.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
104.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
103.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
101.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
101.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
99.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
98.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
98.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
97.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
95.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
90.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
89.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
89.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
89.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
89.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
87.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
87.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
85.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
85.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
84.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
84.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
83.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
82.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
81.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
77.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
75.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
65.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
60.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
2.5
983
Tumor
1.4
411
Tumor
1.2
497
Tumor
1.1
957
Tumor
1.1
877
Tumor
1.0
743
Tumor
0.9
814
Normal
0.9
865
Tumor
0.9
977
Tumor
0.9
1025
Tumor
0.8
277
Tumor
0.8
817
Tumor
0.8
343
Tumor
0.7
192
Normal
0.7
447
Tumor
0.7
535
Tumor
0.7
367
Tumor
0.7
813
Tumor
0.7
171
Tumor
0.7
211
Tumor
0.6
951
Tumor
0.6
745
Tumor
0.6
921
Tumor
0.6
463
Tumor
0.6
391
Tumor
0.6
311
Tumor
0.6
355
Tumor
0.6
913
Tumor
0.5
217
Tumor
0.5
351
Tumor
0.5
1013
Tumor
0.5
695
Tumor
0.5
815
Tumor
0.5
663
Tumor
0.5
737
Tumor
0.5
923
Tumor
0.5
975
Tumor
0.5
161
Tumor
0.5
672
Normal
0.4
145
Tumor
0.4
571
Tumor
0.4
671
Tumor
0.4
297
Tumor
0.4
1031
Tumor
0.4
131
Tumor
0.4
433
Tumor
0.4
313
Tumor
0.4
285
Tumor
0.4
967
Tumor
0.4
721
Tumor
0.4
661
Tumor
0.4
213
Tumor
0.4
937
Tumor
0.4
724
Normal
0.4
123
Tumor
0.4
697
Tumor
0.4
863
Tumor
0.3
221
Tumor
0.3
413
Tumor
0.3
112
Tumor
0.3
713
Tumor
0.3
536
Normal
0.3
647
Tumor
0.3
573
Tumor
0.3
534
Normal
0.3
1015
Tumor
0.3
383
Tumor
0.3
823
Tumor
0.3
517
Tumor
0.3
385
Tumor
0.3
283
Tumor
0.3
641
Tumor
0.2
467
Tumor
0.2
537
Tumor
0.2
113
Tumor
0.2
425
Tumor
0.2
477
Tumor
0.2
395
Tumor
0.2
493
Tumor
0.2
135
Tumor
0.2
341
Tumor
0.2
662
Normal
0.2
231
Tumor
0.2
963
Tumor
0.2
375
Tumor
0.2
187
Tumor
0.2
648
Normal
0.2
635
Tumor
0.2
881
Tumor
0.2
286
Normal
0.2
617
Tumor
0.1
666
Normal
0.1
227
Tumor
0.1
984
Normal
0.1
716
Normal
0.1
727
Tumor
0.1
557
Tumor
0.1
365
Tumor
0.1
1021
Tumor
0.1
665
Tumor
0.1
142
Normal
0.1
363
Tumor
0.1
685
Tumor
0.1
1043
Tumor
0.1
714
Normal
0.1
966
Normal
0.1
883
Tumor
0.1
755
Tumor
0.0
195
Tumor
0.0
545
Tumor
0.0
567
Tumor
0.0
861
Tumor
0.0
361
Tumor
0.0
473
Tumor
0.0
564
Normal
0.0
358
Normal
0.0
664
Normal
0.0
127
Tumor
0.0
364
Normal
0.0
978
Normal
0.0
141
Tumor
0.0
421
Tumor
0.0
138
Normal
0.0
851
Tumor
0.0
132
Normal
0.0
568
Normal
0.0
563
Tumor
0.0
546
Normal
0.0
353
Tumor
0.0
384
Normal
0.0
722
Normal
0.0
196
Normal
0.0
331
Tumor
0.0
342
Normal
0.0
715
Tumor
0.0
465
Tumor
0.0
696
Normal
0.0
136
Normal
0.0
1014
Normal
0.0
228
Normal
0.0
461
Tumor
0.0
128
Normal
0.0
352
Normal
0.0
1027
Tumor
0.0
487
Tumor
0.0
422
Normal
0.0
223
Tumor
-0.1
554
Normal
-0.1
146
Normal
-0.1
434
Normal
-0.1
124
Normal
-0.1
628
Normal
-0.1
424
Normal
-0.1
257
Tumor
-0.1
137
Tumor
-0.1
431
Tumor
-0.1
214
Normal
-0.1
191
Tumor
-0.1
943
Tumor
-0.1
785
Tumor
-0.1
746
Normal
-0.1
553
Tumor
-0.1
224
Normal
-0.1
686
Normal
-0.1
917
Tumor
-0.1
857
Tumor
-0.1
362
Normal
-0.1
354
Normal
-0.1
976
Normal
-0.1
916
Normal
-0.1
1041
Tumor
-0.1
494
Normal
-0.1
284
Normal
-0.1
816
Normal
-0.1
955
Tumor
-0.1
125
Tumor
-0.2
356
Normal
-0.2
918
Normal
-0.2
958
Normal
-0.2
111
Normal
-0.2
515
Tumor
-0.2
271
Tumor
-0.2
415
Tumor
-0.2
393
Tumor
-0.2
114
Normal
-0.2
1016
Normal
-0.2
368
Normal
-0.2
873
Tumor
-0.2
528
Normal
-0.2
416
Normal
-0.2
376
Normal
-0.2
915
Tumor
-0.2
267
Tumor
-0.2
327
Tumor
-0.2
268
Normal
-0.2
741
Tumor
-0.2
366
Normal
-0.2
1045
Tumor
-0.2
261
Tumor
-0.2
786
Normal
-0.2
444
Normal
-0.2
222
Normal
-0.2
478
Normal
-0.2
878
Normal
-0.2
925
Tumor
-0.2
455
Tumor
-0.2
126
Normal
-0.2
574
Normal
-0.2
615
Tumor
-0.2
262
Normal
-0.2
466
Normal
-0.2
884
Normal
-0.2
426
Normal
-0.2
468
Normal
-0.2
423
Tumor
-0.2
744
Normal
-0.2
912
Normal
-0.2
427
Tumor
-0.2
572
Normal
-0.2
492
Normal
-0.2
498
Normal
-0.3
218
Normal
-0.3
428
Normal
-0.3
464
Normal
-0.3
212
Normal
-0.3
558
Normal
-0.3
922
Normal
-0.3
852
Normal
-0.3
824
Normal
-0.3
938
Normal
-0.3
911
Tumor
-0.3
471
Tumor
-0.3
483
Tumor
-0.3
982
Normal
-0.3
491
Tumor
-0.3
882
Normal
-0.3
533
Tumor
-0.3
481
Tumor
-0.3
698
Normal
-0.3
874
Normal
-0.3
627
Tumor
-0.3
968
Normal
-0.3
924
Normal
-0.3
232
Normal
-0.3
524
Normal
-0.3
448
Normal
-0.3
482
Normal
-0.3
777
Tumor
-0.3
484
Normal
-0.3
914
Normal
-0.4
926
Normal
-0.4
357
Tumor
-0.4
858
Normal
-0.4
742
Normal
-0.4
1022
Normal
-0.4
456
Normal
-0.4
474
Normal
-0.4
258
Normal
-0.4
862
Normal
-0.4
864
Normal
-0.4
523
Tumor
-0.4
1026
Normal
-0.4
387
Tumor
-0.4
328
Normal
-0.4
952
Normal
-0.4
272
Normal
-0.4
414
Normal
-0.4
636
Normal
-0.4
344
Normal
-0.4
616
Normal
-0.4
818
Normal
-0.4
488
Normal
-0.4
954
Normal
-0.4
188
Normal
-0.4
396
Normal
-0.4
518
Normal
-0.4
446
Normal
-0.5
1032
Normal
-0.5
756
Normal
-0.5
527
Tumor
-0.5
412
Normal
-0.5
956
Normal
-0.5
185
Tumor
-0.5
738
Normal
-0.5
186
Normal
-0.5
388
Normal
-0.5
866
Normal
-0.5
953
Tumor
-0.5
472
Normal
-0.5
443
Tumor
-0.5
386
Normal
-0.5
1046
Normal
-0.5
1028
Normal
-0.5
312
Normal
-0.5
1044
Normal
-0.6
451
Tumor
-0.6
867
Tumor
-0.6
516
Normal
-0.6
298
Normal
-0.6
981
Tumor
-0.6
778
Normal
-0.6
944
Normal
-0.6
1042
Normal
-0.6
452
Normal
-0.6
525
Tumor
-0.6
162
Normal
-0.6
728
Normal
-0.6
435
Tumor
-0.6
868
Normal
-0.6
392
Normal
-0.6
642
Normal
-0.6
172
Normal
-0.7
148
Normal
-0.7
332
Normal
-0.7
618
Normal
-0.7
723
Tumor
-0.8
394
Normal
-0.8
526
Normal
-0.8
514
Normal
-0.8
147
Tumor
-0.8
445
Tumor
-0.9
278
Normal
-0.9
436
Normal
-0.9
314
Normal
-0.9
538
Normal
-1.0
964
Normal
-1.0
462
Normal
-1.0
513
Tumor
-1.0
432
Normal
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.