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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUFM is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
105.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
274.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
273.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
229.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
205.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
204.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
201.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
198.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
198.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
196.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
188.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
185.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
184.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
182.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
180.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
179.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
177.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
176.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
175.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
175.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
172.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
171.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
170.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
169.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
166.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
166.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
165.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
164.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
163.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
162.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
162.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
161.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
161.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
161.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
160.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
160.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
160.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
159.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
159.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
158.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
157.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
157.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
157.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
155.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
153.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
153.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
153.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
152.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
152.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
151.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
151.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
150.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
150.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
150.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
148.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
148.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
147.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
147.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
147.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
147.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
147.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
146.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
146.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
146.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
146.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
145.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
145.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
145.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
144.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
143.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
143.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
142.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
142.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
142.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
142.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
141.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
141.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
140.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
138.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
138.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
138.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
137.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
136.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
136.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
135.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
135.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
134.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
133.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
133.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
132.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
131.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
131.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
131.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
129.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
129.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
129.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
128.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
128.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
128.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
128.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
127.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
127.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
126.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
126.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
126.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
126.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
125.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
125.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
124.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
124.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
124.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
123.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
123.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
123.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
122.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
122.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
122.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
122.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
122.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
121.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
121.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
121.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
120.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
120.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
120.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
120.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
119.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
119.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
119.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
119.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
119.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
119.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
119.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
118.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
117.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
117.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
117.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
117.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
117.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
116.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
116.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
115.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
115.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
115.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
115.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
114.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
114.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
114.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
114.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
113.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
112.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
112.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
111.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
111.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
111.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
111.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
110.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
110.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
110.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
110.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
110.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
109.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
108.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
108.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
107.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
107.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
107.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
107.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
106.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
106.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
106.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
106.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
105.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
105.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
105.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
105.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
105.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
105.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
104.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
103.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
103.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
103.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
102.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
102.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
101.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
101.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
100.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
100.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
99.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
99.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
99.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
98.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
98.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
98.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
97.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
97.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
97.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
97.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
96.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
96.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
96.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
96.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
96.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
95.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
95.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
95.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
95.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
95.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
94.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
94.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
94.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
94.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
94.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
93.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
93.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
93.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
93.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
92.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
92.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
92.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
92.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
91.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
91.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
91.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
91.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
91.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
90.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
90.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
90.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
90.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
89.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
89.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
89.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
88.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
88.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
88.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
87.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
86.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
86.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
86.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
86.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
85.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
85.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
85.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
85.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
85.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
84.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
84.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
84.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
84.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
84.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
83.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
82.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
82.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
82.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
82.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
82.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
81.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
80.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
79.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
79.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
78.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
77.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
77.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
77.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
76.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
76.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
75.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
74.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
74.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
74.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
74.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
73.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
73.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
73.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
73.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
73.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
73.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
73.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
72.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
72.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
72.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
70.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
70.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
69.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
69.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
69.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
68.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
68.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
68.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
67.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
67.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
66.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
65.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
65.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
65.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
65.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
64.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
64.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
63.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
63.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
62.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
62.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
62.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
61.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
61.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
59.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
59.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
59.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
58.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
58.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
58.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
58.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
58.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
58.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
56.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
56.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
55.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
55.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
55.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
54.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
53.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
53.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
53.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
53.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
52.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
52.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
51.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
50.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
50.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
48.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
48.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
48.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
47.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
46.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
46.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
46.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
46.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
46.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
45.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
45.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
45.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
43.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
43.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
42.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
41.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
40.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
38.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
36.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
34.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
33.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUFM is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
92.5
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
249.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
233.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
220.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
208.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
191.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
178.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
176.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
176.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
174.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
169.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
169.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
165.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
165.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
163.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
163.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
162.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
160.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
158.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
157.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
157.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
153.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
146.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
145.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
140.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
140.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
140.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
138.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
137.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
135.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
135.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
134.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
130.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
129.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
128.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
125.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
125.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
124.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
123.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
122.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
121.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
121.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
121.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
120.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
119.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
119.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
118.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
117.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
115.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
115.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
115.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
115.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
114.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
113.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
112.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
112.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
110.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
110.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
110.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
110.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
109.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
109.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
108.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
108.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
108.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
108.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
105.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
105.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
105.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
104.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
104.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
104.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
104.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
103.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
103.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
102.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
102.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
102.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
101.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
100.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
100.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
99.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
98.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
98.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
97.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
96.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
96.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
96.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
95.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
95.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
94.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
93.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
93.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
92.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
91.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
90.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
90.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
90.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
90.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
90.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
89.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
88.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
88.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
88.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
87.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
87.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
87.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
87.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
86.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
86.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
86.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
86.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
85.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
85.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
85.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
85.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
84.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
84.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
84.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
84.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
83.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
83.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
83.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
82.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
82.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
81.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
81.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
81.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
81.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
81.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
80.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
80.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
80.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
80.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
79.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
79.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
79.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
79.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
78.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
78.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
77.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
77.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
76.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
76.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
76.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
76.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
75.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
75.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
75.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
74.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
74.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
74.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
74.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
73.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
73.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
73.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
72.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
71.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
71.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
71.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
70.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
70.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
70.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
69.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
69.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
68.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
68.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
68.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
67.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
66.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
66.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
66.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
66.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
65.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
64.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
64.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
63.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
63.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
63.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
63.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
63.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
63.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
62.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
62.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
62.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
61.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
61.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
61.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
61.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
60.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
59.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
59.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
59.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
59.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
58.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
57.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
57.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
56.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
56.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
55.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
55.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
53.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
53.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
53.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
52.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
52.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
52.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
52.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
52.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
51.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
51.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
51.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
47.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
47.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
47.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
46.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
46.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
45.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
43.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
41.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
40.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
39.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
35.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.2
231
Tumor
1.0
883
Tumor
1.0
695
Tumor
1.0
925
Tumor
0.9
465
Tumor
0.9
1041
Tumor
0.9
127
Tumor
0.8
513
Tumor
0.7
685
Tumor
0.7
615
Tumor
0.6
627
Tumor
0.6
423
Tumor
0.6
435
Tumor
0.6
361
Tumor
0.5
937
Tumor
0.5
741
Tumor
0.5
911
Tumor
0.4
915
Tumor
0.4
411
Tumor
0.4
365
Tumor
0.4
1013
Tumor
0.4
981
Tumor
0.4
713
Tumor
0.3
1014
Normal
0.3
128
Normal
0.3
967
Tumor
0.3
477
Tumor
0.3
484
Normal
0.3
267
Tumor
0.3
1046
Normal
0.3
922
Normal
0.3
635
Tumor
0.3
393
Tumor
0.3
1045
Tumor
0.3
868
Normal
0.3
487
Tumor
0.3
473
Tumor
0.3
912
Normal
0.3
557
Tumor
0.3
867
Tumor
0.3
123
Tumor
0.3
641
Tumor
0.3
696
Normal
0.3
864
Normal
0.3
926
Normal
0.3
742
Normal
0.3
357
Tumor
0.3
356
Normal
0.2
1032
Normal
0.2
525
Tumor
0.2
964
Normal
0.2
944
Normal
0.2
938
Normal
0.2
963
Tumor
0.2
488
Normal
0.2
965
Tumor
0.2
858
Normal
0.2
553
Tumor
0.2
358
Normal
0.2
636
Normal
0.2
298
Normal
0.2
526
Normal
0.2
364
Normal
0.2
462
Normal
0.2
698
Normal
0.2
924
Normal
0.2
137
Tumor
0.2
1015
Tumor
0.2
518
Normal
0.2
738
Normal
0.2
824
Normal
0.2
342
Normal
0.2
171
Tumor
0.2
546
Normal
0.2
426
Normal
0.2
756
Normal
0.2
954
Normal
0.2
145
Tumor
0.2
873
Tumor
0.1
196
Normal
0.1
564
Normal
0.1
528
Normal
0.1
778
Normal
0.1
882
Normal
0.1
958
Normal
0.1
482
Normal
0.1
746
Normal
0.1
422
Normal
0.1
686
Normal
0.1
818
Normal
0.1
744
Normal
0.1
866
Normal
0.1
714
Normal
0.1
354
Normal
0.1
367
Tumor
0.1
1022
Normal
0.1
328
Normal
0.1
132
Normal
0.1
572
Normal
0.1
142
Normal
0.1
387
Tumor
0.1
1044
Normal
0.1
554
Normal
0.1
112
Tumor
0.1
448
Normal
0.1
394
Normal
0.1
968
Normal
0.1
697
Tumor
0.1
982
Normal
0.1
715
Tumor
0.1
722
Normal
0.1
297
Tumor
0.1
862
Normal
0.1
723
Tumor
0.1
984
Normal
0.1
452
Normal
0.1
472
Normal
0.1
388
Normal
0.1
114
Normal
0.1
535
Tumor
0.1
414
Normal
0.1
162
Normal
0.1
366
Normal
0.1
494
Normal
0.1
952
Normal
0.1
514
Normal
0.1
728
Normal
0.1
212
Normal
0.1
392
Normal
0.1
222
Normal
0.1
1026
Normal
0.1
721
Tumor
0.1
214
Normal
0.1
228
Normal
0.1
218
Normal
0.1
852
Normal
0.1
665
Tumor
0.1
558
Normal
0.1
568
Normal
0.1
172
Normal
0.1
786
Normal
0.1
878
Normal
0.1
352
Normal
0.1
616
Normal
0.1
648
Normal
0.1
424
Normal
0.1
716
Normal
0.1
538
Normal
0.1
272
Normal
0.0
466
Normal
0.0
148
Normal
0.0
916
Normal
0.0
344
Normal
0.0
474
Normal
0.0
534
Normal
0.0
478
Normal
0.0
433
Tumor
0.0
662
Normal
0.0
436
Normal
0.0
261
Tumor
0.0
1016
Normal
0.0
446
Normal
0.0
138
Normal
0.0
232
Normal
0.0
785
Tumor
0.0
258
Normal
0.0
642
Normal
0.0
874
Normal
0.0
755
Tumor
0.0
978
Normal
0.0
918
Normal
0.0
524
Normal
0.0
516
Normal
0.0
491
Tumor
0.0
284
Normal
0.0
376
Normal
0.0
161
Tumor
0.0
427
Tumor
0.0
914
Normal
0.0
861
Tumor
0.0
278
Normal
0.0
976
Normal
0.0
286
Normal
0.0
481
Tumor
0.0
451
Tumor
0.0
456
Normal
0.0
136
Normal
0.0
396
Normal
0.0
664
Normal
0.0
745
Tumor
0.0
468
Normal
0.0
362
Normal
0.0
857
Tumor
0.0
1042
Normal
0.0
111
Normal
0.0
341
Tumor
0.0
412
Normal
0.0
314
Normal
0.0
432
Normal
0.0
227
Tumor
0.0
957
Tumor
0.0
923
Tumor
0.0
966
Normal
0.0
1021
Tumor
0.0
574
Normal
0.0
573
Tumor
0.0
483
Tumor
0.0
464
Normal
0.0
186
Normal
0.0
497
Tumor
0.0
126
Normal
-0.1
1028
Normal
-0.1
262
Normal
-0.1
224
Normal
-0.1
628
Normal
-0.1
618
Normal
-0.1
391
Tumor
-0.1
332
Normal
-0.1
428
Normal
-0.1
416
Normal
-0.1
195
Tumor
-0.1
977
Tumor
-0.1
533
Tumor
-0.1
816
Normal
-0.1
672
Normal
-0.1
146
Normal
-0.1
312
Normal
-0.1
327
Tumor
-0.1
956
Normal
-0.1
185
Tumor
-0.1
124
Normal
-0.1
1043
Tumor
-0.1
537
Tumor
-0.1
384
Normal
-0.1
191
Tumor
-0.1
666
Normal
-0.1
141
Tumor
-0.1
383
Tumor
-0.1
113
Tumor
-0.1
492
Normal
-0.1
188
Normal
-0.1
953
Tumor
-0.1
355
Tumor
-0.1
386
Normal
-0.1
443
Tumor
-0.1
135
Tumor
-0.2
823
Tumor
-0.2
415
Tumor
-0.2
777
Tumor
-0.2
647
Tumor
-0.2
955
Tumor
-0.2
515
Tumor
-0.2
527
Tumor
-0.2
863
Tumor
-0.2
434
Normal
-0.2
724
Normal
-0.2
431
Tumor
-0.2
498
Normal
-0.2
445
Tumor
-0.2
493
Tumor
-0.2
884
Normal
-0.2
567
Tumor
-0.2
461
Tumor
-0.2
444
Normal
-0.2
536
Normal
-0.2
268
Normal
-0.2
663
Tumor
-0.2
368
Normal
-0.2
217
Tumor
-0.2
517
Tumor
-0.2
1025
Tumor
-0.2
351
Tumor
-0.3
523
Tumor
-0.3
223
Tumor
-0.3
257
Tumor
-0.3
353
Tumor
-0.3
563
Tumor
-0.3
313
Tumor
-0.3
913
Tumor
-0.3
395
Tumor
-0.3
187
Tumor
-0.3
192
Normal
-0.3
363
Tumor
-0.3
1031
Tumor
-0.4
421
Tumor
-0.4
813
Tumor
-0.5
661
Tumor
-0.5
865
Tumor
-0.5
817
Tumor
-0.5
851
Tumor
-0.5
455
Tumor
-0.5
413
Tumor
-0.5
951
Tumor
-0.5
617
Tumor
-0.5
1027
Tumor
-0.5
311
Tumor
-0.5
814
Normal
-0.5
467
Tumor
-0.5
727
Tumor
-0.6
447
Tumor
-0.6
211
Tumor
-0.6
917
Tumor
-0.6
147
Tumor
-0.6
943
Tumor
-0.6
983
Tumor
-0.6
545
Tumor
-0.6
331
Tumor
-0.6
743
Tumor
-0.6
221
Tumor
-0.6
921
Tumor
-0.6
975
Tumor
-0.6
213
Tumor
-0.7
277
Tumor
-0.7
877
Tumor
-0.7
471
Tumor
-0.7
881
Tumor
-0.7
385
Tumor
-0.7
425
Tumor
-0.7
125
Tumor
-0.7
343
Tumor
-0.7
271
Tumor
-0.8
815
Tumor
-0.8
375
Tumor
-0.8
671
Tumor
-0.8
463
Tumor
-0.8
737
Tumor
-0.9
285
Tumor
-0.9
131
Tumor
-0.9
283
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.