MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.2 nTPM
HPA Brain:23.8 nTPM
GTEx:1.2 nTPM
FANTOM5:5.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
2666 Male, age 74, left hemisphere 29.3
1830 Male, age 51, unknown 26.8
2219 Male, age 76, both hemispheres 26.4
1833 Male, age 53, unknown 23.9
2019 Male, age 18, unknown 23.3
1827 Male, age 72, unknown 23.0
2586 Male, age 75, left hemisphere 22.0
2828 Female, age 72, unknown 21.2
1870 Female, age 42, unknown 18.1
2411 Female, age 72, unknown 17.4
Dorsal raphe nucleus
nTPM: 19.3
2016 Female, age 72, unknown 21.2
2750 Male, age 76, both hemispheres 20.4
1828 Male, age 53, unknown 19.9
2047 Male, age 72, unknown 19.9
2298 Female, age 72, unknown 15.0
Inferior colliculus
nTPM: 21.9
2849 Male, age 72, unknown 24.9
1890 Male, age 53, unknown 23.7
1848 Female, age 42, unknown 19.8
2097 Female, age 72, unknown 19.0
Median raphe nucleus
nTPM: 21.4
2220 Male, age 76, midline 21.4
Periaquaductal grey, anterior
nTPM: 20.9
1947 Male, age 18, unknown 24.2
1795 Male, age 51, unknown 21.6
2502 Female, age 75, unknown 16.9
Periaquaductal grey, dorsal
nTPM: 21.4
1831 Male, age 72, unknown 24.8
2464 Female, age 72, unknown 24.7
2850 Male, age 76, both hemispheres 20.2
1840 Male, age 53, unknown 15.7
Periaquaductal grey, lateral
nTPM: 23.8
2140 Male, age 76, both hemispheres 27.3
2053 Male, age 18, unknown 24.5
2272 Male, age 74, both hemispheres 19.8
Pretectal area
nTPM: 21.8
2667 Female, age 75, unknown 26.6
2825 Male, age 18, unknown 26.1
2407 Male, age 75, both hemispheres 25.4
2316 Male, age 76, right hemisphere 24.3
1816 Male, age 51, unknown 21.8
2224 Female, age 72, unknown 21.7
1815 Male, age 53, unknown 20.3
1944 Female, age 72, unknown 19.9
2273 Male, age 74, both hemispheres 19.8
2007 Male, age 72, unknown 17.2
1817 Female, age 42, unknown 17.1
Red nucleus
nTPM: 21.5
2823 Male, age 76, right hemisphere 28.0
2584 Male, age 75, left hemisphere 27.5
2588 Male, age 74, left hemisphere 26.9
1865 Male, age 51, unknown 22.4
1904 Male, age 53, unknown 22.0
1954 Female, age 42, unknown 21.7
2503 Female, age 72, unknown 20.1
2725 Female, age 75, unknown 19.7
2227 Male, age 72, unknown 18.3
1821 Female, age 72, unknown 18.1
2769 Male, age 72, unknown 17.8
2785 Male, age 18, unknown 15.7
Substantia nigra
nTPM: 19.9
2665 Male, age 74, both hemispheres 25.7
2241 Male, age 72, unknown 23.4
2583 Male, age 75, right hemisphere 22.5
2699 Male, age 18, unknown 22.5
1941 Male, age 53, unknown 21.4
2590 Female, age 75, unknown 19.5
1889 Female, age 72, unknown 17.3
2409 Female, age 72, unknown 16.5
1851 Male, age 51, unknown 16.1
1916 Female, age 42, unknown 14.5
Superior colliculus
nTPM: 22.8
2664 Male, age 75, both hemispheres 30.2
1895 Male, age 76, right hemisphere 25.7
2087 Female, age 72, unknown 24.8
2668 Female, age 75, unknown 24.2
1995 Male, age 72, unknown 23.1
1839 Male, age 51, unknown 21.1
2587 Male, age 74, left hemisphere 20.8
1796 Male, age 53, unknown 20.2
1913 Female, age 42, unknown 19.7
2261 Male, age 18, unknown 17.8
Ventral tegmental area
nTPM: 18.8
2021 Male, age 53, unknown 22.2
2223 Female, age 72, unknown 19.7
1942 Male, age 51, unknown 18.6
1915 Female, age 42, unknown 17.8
2218 Male, age 76, both hemispheres 17.8
2410 Female, age 72, unknown 16.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.2
Samples: 139

Max nTPM: 6.2
Min nTPM: 0.1
Std nTPM: 0.8
Median nTPM: 1.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 6.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 5.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 3.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 2.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 2.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 2.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 2.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.6
FF:10158-103A5 76 years, female 5.6

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