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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYBC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
169.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
98.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
96.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
96.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
93.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
91.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
90.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
87.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
79.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
78.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
77.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
76.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
70.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
68.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
66.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
65.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
65.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
64.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
64.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
64.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
64.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
60.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
60.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
57.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
57.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
57.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
57.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
57.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
55.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
55.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
55.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
54.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
54.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
53.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
53.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
53.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
53.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
53.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
53.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
52.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
51.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
51.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
50.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
49.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
49.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
47.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
47.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
47.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
46.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
46.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
45.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
45.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
45.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
45.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
43.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
43.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
43.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
43.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
42.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
42.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
42.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
42.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
41.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
41.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
41.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
39.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
39.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
38.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
37.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
37.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
35.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
34.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
32.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
29.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
26.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
981
Tumor
1.4
435
Tumor
1.4
533
Tumor
1.2
937
Tumor
1.1
745
Tumor
0.8
257
Tumor
0.7
1027
Tumor
0.7
741
Tumor
0.7
433
Tumor
0.6
524
Normal
0.6
492
Normal
0.5
573
Tumor
0.5
558
Normal
0.5
957
Tumor
0.5
727
Tumor
0.4
125
Tumor
0.4
392
Normal
0.4
498
Normal
0.4
526
Normal
0.4
917
Tumor
0.4
861
Tumor
0.4
1042
Normal
0.4
1015
Tumor
0.4
954
Normal
0.4
721
Tumor
0.4
1013
Tumor
0.3
778
Normal
0.3
423
Tumor
0.3
755
Tumor
0.3
375
Tumor
0.3
636
Normal
0.3
966
Normal
0.3
953
Tumor
0.3
145
Tumor
0.3
311
Tumor
0.3
554
Normal
0.3
142
Normal
0.3
538
Normal
0.3
685
Tumor
0.3
686
Normal
0.3
857
Tumor
0.3
1014
Normal
0.3
1026
Normal
0.3
877
Tumor
0.3
963
Tumor
0.3
445
Tumor
0.2
696
Normal
0.2
481
Tumor
0.2
944
Normal
0.2
938
Normal
0.2
1032
Normal
0.2
213
Tumor
0.2
978
Normal
0.2
968
Normal
0.2
976
Normal
0.2
211
Tumor
0.2
744
Normal
0.2
1043
Tumor
0.2
431
Tumor
0.2
952
Normal
0.2
922
Normal
0.2
195
Tumor
0.2
1028
Normal
0.2
478
Normal
0.2
572
Normal
0.2
146
Normal
0.2
746
Normal
0.2
286
Normal
0.2
434
Normal
0.2
722
Normal
0.2
642
Normal
0.2
414
Normal
0.2
494
Normal
0.2
224
Normal
0.2
661
Tumor
0.2
261
Tumor
0.1
867
Tumor
0.1
497
Tumor
0.1
724
Normal
0.1
672
Normal
0.1
368
Normal
0.1
916
Normal
0.1
447
Tumor
0.1
355
Tumor
0.1
574
Normal
0.1
662
Normal
0.1
514
Normal
0.1
477
Tumor
0.1
112
Tumor
0.1
536
Normal
0.1
616
Normal
0.1
628
Normal
0.1
647
Tumor
0.1
212
Normal
0.1
964
Normal
0.1
488
Normal
0.1
698
Normal
0.1
1016
Normal
0.1
697
Tumor
0.1
1025
Tumor
0.1
728
Normal
0.1
975
Tumor
0.1
714
Normal
0.1
958
Normal
0.1
648
Normal
0.1
283
Tumor
0.1
557
Tumor
0.1
1045
Tumor
0.1
217
Tumor
0.1
124
Normal
0.1
723
Tumor
0.1
525
Tumor
0.1
114
Normal
0.1
352
Normal
0.1
361
Tumor
0.1
284
Normal
0.1
192
Normal
0.1
862
Normal
0.1
982
Normal
0.1
518
Normal
0.1
815
Tumor
0.1
851
Tumor
0.1
415
Tumor
0.1
137
Tumor
0.1
874
Normal
0.1
713
Tumor
0.1
422
Normal
0.1
984
Normal
0.1
918
Normal
0.1
468
Normal
0.1
113
Tumor
0.1
695
Tumor
0.1
738
Normal
0.1
126
Normal
0.1
873
Tumor
0.1
926
Normal
0.1
528
Normal
0.1
412
Normal
0.1
715
Tumor
0.1
665
Tumor
0.1
868
Normal
0.1
816
Normal
0.0
635
Tumor
0.0
228
Normal
0.0
383
Tumor
0.0
268
Normal
0.0
955
Tumor
0.0
516
Normal
0.0
866
Normal
0.0
915
Tumor
0.0
444
Normal
0.0
393
Tumor
0.0
534
Normal
0.0
466
Normal
0.0
1044
Normal
0.0
742
Normal
0.0
756
Normal
0.0
824
Normal
0.0
416
Normal
0.0
568
Normal
0.0
353
Tumor
0.0
484
Normal
0.0
535
Tumor
0.0
395
Tumor
0.0
527
Tumor
0.0
813
Tumor
0.0
187
Tumor
0.0
641
Tumor
0.0
878
Normal
0.0
493
Tumor
0.0
1022
Normal
0.0
262
Normal
0.0
943
Tumor
0.0
426
Normal
0.0
424
Normal
0.0
923
Tumor
0.0
823
Tumor
0.0
914
Normal
0.0
983
Tumor
0.0
786
Normal
0.0
363
Tumor
0.0
446
Normal
0.0
912
Normal
0.0
618
Normal
0.0
128
Normal
0.0
111
Normal
0.0
852
Normal
0.0
467
Tumor
0.0
737
Tumor
0.0
218
Normal
0.0
362
Normal
0.0
1031
Tumor
0.0
777
Tumor
0.0
491
Tumor
0.0
615
Tumor
0.0
185
Tumor
0.0
443
Tumor
-0.1
482
Normal
-0.1
388
Normal
-0.1
487
Tumor
-0.1
214
Normal
-0.1
924
Normal
-0.1
564
Normal
-0.1
357
Tumor
-0.1
356
Normal
-0.1
191
Tumor
-0.1
223
Tumor
-0.1
135
Tumor
-0.1
546
Normal
-0.1
1046
Normal
-0.1
956
Normal
-0.1
394
Normal
-0.1
136
Normal
-0.1
563
Tumor
-0.1
864
Normal
-0.1
818
Normal
-0.1
716
Normal
-0.1
432
Normal
-0.1
455
Tumor
-0.1
421
Tumor
-0.1
884
Normal
-0.1
384
Normal
-0.1
376
Normal
-0.1
364
Normal
-0.1
332
Normal
-0.1
452
Normal
-0.1
977
Tumor
-0.1
925
Tumor
-0.1
427
Tumor
-0.1
314
Normal
-0.1
141
Tumor
-0.1
666
Normal
-0.1
188
Normal
-0.1
271
Tumor
-0.1
882
Normal
-0.1
328
Normal
-0.1
473
Tumor
-0.1
148
Normal
-0.1
448
Normal
-0.1
814
Normal
-0.1
138
Normal
-0.1
354
Normal
-0.2
456
Normal
-0.2
272
Normal
-0.2
258
Normal
-0.2
411
Tumor
-0.2
664
Normal
-0.2
171
Tumor
-0.2
785
Tumor
-0.2
921
Tumor
-0.2
951
Tumor
-0.2
465
Tumor
-0.2
172
Normal
-0.2
227
Tumor
-0.2
186
Normal
-0.2
386
Normal
-0.2
147
Tumor
-0.2
472
Normal
-0.2
341
Tumor
-0.2
232
Normal
-0.2
132
Normal
-0.2
911
Tumor
-0.2
385
Tumor
-0.2
297
Tumor
-0.2
196
Normal
-0.2
464
Normal
-0.2
817
Tumor
-0.2
517
Tumor
-0.2
858
Normal
-0.2
277
Tumor
-0.2
127
Tumor
-0.2
428
Normal
-0.2
617
Tumor
-0.2
553
Tumor
-0.2
671
Tumor
-0.2
343
Tumor
-0.2
123
Tumor
-0.2
462
Normal
-0.2
396
Normal
-0.2
436
Normal
-0.2
358
Normal
-0.2
451
Tumor
-0.2
663
Tumor
-0.2
387
Tumor
-0.2
474
Normal
-0.2
298
Normal
-0.2
913
Tumor
-0.2
865
Tumor
-0.2
222
Normal
-0.3
351
Tumor
-0.3
1021
Tumor
-0.3
312
Normal
-0.3
571
Tumor
-0.3
327
Tumor
-0.3
342
Normal
-0.3
881
Tumor
-0.3
278
Normal
-0.3
863
Tumor
-0.3
1041
Tumor
-0.3
513
Tumor
-0.3
344
Normal
-0.3
883
Tumor
-0.3
231
Tumor
-0.3
567
Tumor
-0.3
313
Tumor
-0.3
627
Tumor
-0.3
221
Tumor
-0.3
965
Tumor
-0.3
483
Tumor
-0.3
365
Tumor
-0.3
515
Tumor
-0.3
471
Tumor
-0.3
162
Normal
-0.3
523
Tumor
-0.4
366
Normal
-0.4
331
Tumor
-0.4
367
Tumor
-0.4
463
Tumor
-0.4
161
Tumor
-0.4
967
Tumor
-0.4
391
Tumor
-0.5
461
Tumor
-0.5
545
Tumor
-0.5
131
Tumor
-0.6
267
Tumor
-0.6
285
Tumor
-0.6
413
Tumor
-0.6
537
Tumor
-0.7
743
Tumor
-0.7
425
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
