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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HYI is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
156.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
155.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
131.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
120.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
114.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
114.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
110.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
110.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
109.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
108.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
101.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
101.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
96.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
95.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
94.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
94.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
92.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
90.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
89.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
89.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
88.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
88.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
87.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
87.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
87.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
86.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
85.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
85.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
85.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
84.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
83.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
83.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
82.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
81.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
80.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
80.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
80.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
79.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
77.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
76.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
75.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
74.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
74.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
74.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
73.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
72.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
71.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
71.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
70.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
70.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
68.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
68.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
68.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
68.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
67.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
67.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
67.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
67.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
67.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
66.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
66.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
65.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
65.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
65.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
65.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
64.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
64.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
64.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
64.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
63.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
62.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
62.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
61.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
61.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
60.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
60.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
60.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
60.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
59.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
59.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
58.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
58.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
58.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
58.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
57.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
57.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
57.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
56.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
56.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
55.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
55.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
55.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
55.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
54.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
54.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
53.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
53.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
53.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
53.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
53.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
53.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
53.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
52.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
52.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
52.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
52.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
52.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
52.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
51.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
51.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
51.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
51.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
50.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
49.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
49.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
49.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
49.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
48.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
48.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
48.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
48.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
47.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
47.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
47.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
47.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
46.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
46.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
46.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
46.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
46.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
46.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
46.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
46.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
46.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
45.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
45.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
45.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
44.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
44.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
44.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
44.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
44.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
44.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
43.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
43.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
42.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
42.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
42.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
42.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
42.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
41.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
41.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
40.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
39.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
39.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
39.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
38.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
37.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
37.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
35.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
35.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
35.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
34.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
33.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
33.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
31.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
31.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
29.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
29.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HYI is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.8
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
219.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
218.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
173.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
171.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
144.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
133.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
113.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
102.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
91.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
86.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
81.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
80.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
80.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
79.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
78.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
75.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
74.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
74.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
67.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
66.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
64.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
64.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
63.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
63.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
62.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
61.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
61.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
60.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
59.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
58.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
58.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
58.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
57.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
57.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
56.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
56.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
55.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
55.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
55.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
54.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
54.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
53.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
52.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
50.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
48.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
48.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
47.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
47.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
46.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
45.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
44.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
44.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
43.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
43.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
40.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
40.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
39.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
35.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
33.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
33.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
1.4
125
Tumor
0.9
342
Normal
0.8
1022
Normal
0.8
818
Normal
0.8
186
Normal
0.8
298
Normal
0.7
162
Normal
0.7
742
Normal
0.7
746
Normal
0.7
261
Tumor
0.7
376
Normal
0.7
714
Normal
0.6
744
Normal
0.6
332
Normal
0.6
862
Normal
0.6
915
Tumor
0.6
436
Normal
0.6
698
Normal
0.6
422
Normal
0.6
132
Normal
0.6
145
Tumor
0.6
868
Normal
0.6
426
Normal
0.6
952
Normal
0.6
745
Tumor
0.6
494
Normal
0.6
484
Normal
0.6
723
Tumor
0.5
196
Normal
0.5
232
Normal
0.5
546
Normal
0.5
648
Normal
0.5
1026
Normal
0.5
424
Normal
0.5
148
Normal
0.5
944
Normal
0.5
482
Normal
0.5
738
Normal
0.5
172
Normal
0.5
534
Normal
0.5
146
Normal
0.5
1046
Normal
0.5
912
Normal
0.5
863
Tumor
0.5
358
Normal
0.5
858
Normal
0.5
824
Normal
0.5
647
Tumor
0.4
456
Normal
0.4
911
Tumor
0.4
616
Normal
0.4
878
Normal
0.4
222
Normal
0.4
392
Normal
0.4
488
Normal
0.4
938
Normal
0.4
472
Normal
0.4
124
Normal
0.4
756
Normal
0.4
728
Normal
0.4
278
Normal
0.4
816
Normal
0.4
354
Normal
0.4
664
Normal
0.4
111
Normal
0.4
214
Normal
0.4
466
Normal
0.4
428
Normal
0.4
716
Normal
0.4
114
Normal
0.4
882
Normal
0.4
884
Normal
0.4
462
Normal
0.4
386
Normal
0.4
618
Normal
0.4
412
Normal
0.3
864
Normal
0.3
268
Normal
0.3
464
Normal
0.3
312
Normal
0.3
852
Normal
0.3
286
Normal
0.3
136
Normal
0.3
722
Normal
0.3
574
Normal
0.3
696
Normal
0.3
478
Normal
0.3
356
Normal
0.3
498
Normal
0.3
516
Normal
0.3
388
Normal
0.3
554
Normal
0.3
394
Normal
0.3
344
Normal
0.3
414
Normal
0.3
416
Normal
0.3
128
Normal
0.3
1014
Normal
0.3
366
Normal
0.3
778
Normal
0.3
924
Normal
0.3
364
Normal
0.3
564
Normal
0.3
514
Normal
0.3
393
Tumor
0.3
572
Normal
0.3
1032
Normal
0.3
866
Normal
0.3
883
Tumor
0.2
636
Normal
0.2
192
Normal
0.2
448
Normal
0.2
558
Normal
0.2
984
Normal
0.2
672
Normal
0.2
314
Normal
0.2
695
Tumor
0.2
352
Normal
0.2
1016
Normal
0.2
138
Normal
0.2
272
Normal
0.2
126
Normal
0.2
142
Normal
0.2
228
Normal
0.2
786
Normal
0.2
446
Normal
0.2
258
Normal
0.2
191
Tumor
0.2
1045
Tumor
0.2
662
Normal
0.2
262
Normal
0.2
958
Normal
0.2
857
Tumor
0.2
685
Tumor
0.2
642
Normal
0.2
284
Normal
0.2
737
Tumor
0.2
568
Normal
0.2
1044
Normal
0.2
918
Normal
0.2
231
Tumor
0.2
955
Tumor
0.2
666
Normal
0.2
481
Tumor
0.2
686
Normal
0.2
926
Normal
0.1
492
Normal
0.1
384
Normal
0.1
452
Normal
0.1
982
Normal
0.1
218
Normal
0.1
785
Tumor
0.1
368
Normal
0.1
465
Tumor
0.1
964
Normal
0.1
415
Tumor
0.1
362
Normal
0.1
663
Tumor
0.1
874
Normal
0.1
968
Normal
0.1
528
Normal
0.1
1027
Tumor
0.1
328
Normal
0.1
212
Normal
0.1
615
Tumor
0.1
474
Normal
0.1
922
Normal
0.1
1042
Normal
0.1
431
Tumor
0.1
914
Normal
0.1
434
Normal
0.1
916
Normal
0.1
978
Normal
0.1
112
Tumor
0.1
956
Normal
0.1
432
Normal
0.1
861
Tumor
0.0
361
Tumor
0.0
518
Normal
0.0
873
Tumor
0.0
188
Normal
0.0
185
Tumor
0.0
375
Tumor
0.0
423
Tumor
0.0
953
Tumor
0.0
1013
Tumor
0.0
444
Normal
0.0
1028
Normal
0.0
195
Tumor
0.0
966
Normal
0.0
137
Tumor
0.0
957
Tumor
-0.1
217
Tumor
-0.1
513
Tumor
-0.1
365
Tumor
-0.1
976
Normal
-0.1
135
Tumor
-0.1
313
Tumor
-0.1
127
Tumor
-0.1
538
Normal
-0.1
813
Tumor
-0.1
468
Normal
-0.1
515
Tumor
-0.1
425
Tumor
-0.1
477
Tumor
-0.1
536
Normal
-0.1
396
Normal
-0.1
954
Normal
-0.1
433
Tumor
-0.1
867
Tumor
-0.1
537
Tumor
-0.1
527
Tumor
-0.1
297
Tumor
-0.2
341
Tumor
-0.2
161
Tumor
-0.2
981
Tumor
-0.2
851
Tumor
-0.2
628
Normal
-0.2
943
Tumor
-0.2
1015
Tumor
-0.2
721
Tumor
-0.2
455
Tumor
-0.2
221
Tumor
-0.3
553
Tumor
-0.3
727
Tumor
-0.3
491
Tumor
-0.3
524
Normal
-0.3
526
Normal
-0.3
697
Tumor
-0.3
563
Tumor
-0.3
267
Tumor
-0.3
421
Tumor
-0.3
627
Tumor
-0.3
383
Tumor
-0.3
353
Tumor
-0.3
1041
Tumor
-0.3
171
Tumor
-0.3
443
Tumor
-0.3
977
Tumor
-0.4
635
Tumor
-0.4
447
Tumor
-0.4
141
Tumor
-0.4
445
Tumor
-0.4
463
Tumor
-0.4
224
Normal
-0.4
131
Tumor
-0.4
113
Tumor
-0.4
571
Tumor
-0.4
1021
Tumor
-0.5
391
Tumor
-0.5
387
Tumor
-0.5
665
Tumor
-0.5
814
Normal
-0.5
921
Tumor
-0.5
355
Tumor
-0.5
435
Tumor
-0.5
823
Tumor
-0.5
357
Tumor
-0.5
123
Tumor
-0.5
257
Tumor
-0.5
535
Tumor
-0.5
557
Tumor
-0.6
483
Tumor
-0.6
545
Tumor
-0.6
925
Tumor
-0.6
913
Tumor
-0.6
451
Tumor
-0.6
331
Tumor
-0.6
881
Tumor
-0.6
213
Tumor
-0.6
487
Tumor
-0.6
917
Tumor
-0.6
617
Tumor
-0.6
523
Tumor
-0.6
671
Tumor
-0.6
567
Tumor
-0.6
413
Tumor
-0.6
343
Tumor
-0.6
493
Tumor
-0.7
351
Tumor
-0.7
865
Tumor
-0.7
517
Tumor
-0.7
311
Tumor
-0.7
1025
Tumor
-0.7
461
Tumor
-0.7
411
Tumor
-0.7
363
Tumor
-0.7
473
Tumor
-0.7
573
Tumor
-0.7
777
Tumor
-0.7
951
Tumor
-0.7
327
Tumor
-0.8
271
Tumor
-0.8
963
Tumor
-0.8
147
Tumor
-0.8
187
Tumor
-0.8
755
Tumor
-0.8
277
Tumor
-0.8
1043
Tumor
-0.8
395
Tumor
-0.8
385
Tumor
-0.8
471
Tumor
-0.8
427
Tumor
-0.9
715
Tumor
-0.9
367
Tumor
-0.9
724
Normal
-0.9
743
Tumor
-0.9
877
Tumor
-0.9
211
Tumor
-0.9
467
Tumor
-0.9
923
Tumor
-0.9
497
Tumor
-1.0
285
Tumor
-1.0
983
Tumor
-1.0
223
Tumor
-1.0
975
Tumor
-1.0
713
Tumor
-1.0
283
Tumor
-1.1
965
Tumor
-1.1
817
Tumor
-1.1
661
Tumor
-1.1
815
Tumor
-1.2
227
Tumor
-1.2
533
Tumor
-1.3
525
Tumor
-1.3
641
Tumor
-1.3
1031
Tumor
-1.3
967
Tumor
-1.5
937
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.