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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MPI is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
95.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
71.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
69.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
67.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
64.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
60.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
56.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
51.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
51.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
51.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
48.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
47.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
47.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
46.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
45.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
45.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
44.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
44.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
43.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
41.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
40.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
40.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
38.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
37.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
37.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
36.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
36.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
33.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
32.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MPI is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO45097
0 years, male, NA, stage:3, alive, 1620 days
66.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
52.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
43.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
32.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
1.6
1027
Tumor
1.6
685
Tumor
1.4
513
Tumor
0.9
981
Tumor
0.8
557
Tumor
0.7
261
Tumor
0.6
571
Tumor
0.6
867
Tumor
0.6
695
Tumor
0.6
911
Tumor
0.5
413
Tumor
0.5
111
Normal
0.4
298
Normal
0.4
448
Normal
0.4
878
Normal
0.4
742
Normal
0.4
785
Tumor
0.4
128
Normal
0.4
698
Normal
0.4
618
Normal
0.4
815
Tumor
0.4
342
Normal
0.4
186
Normal
0.4
376
Normal
0.4
137
Tumor
0.3
392
Normal
0.3
436
Normal
0.3
641
Tumor
0.3
344
Normal
0.3
627
Tumor
0.3
426
Normal
0.3
231
Tumor
0.3
135
Tumor
0.3
738
Normal
0.3
617
Tumor
0.3
1046
Normal
0.3
615
Tumor
0.3
862
Normal
0.3
715
Tumor
0.3
616
Normal
0.3
777
Tumor
0.3
861
Tumor
0.3
445
Tumor
0.3
746
Normal
0.3
148
Normal
0.3
756
Normal
0.2
915
Tumor
0.2
493
Tumor
0.2
488
Normal
0.2
411
Tumor
0.2
858
Normal
0.2
955
Tumor
0.2
568
Normal
0.2
462
Normal
0.2
778
Normal
0.2
482
Normal
0.2
132
Normal
0.2
353
Tumor
0.2
196
Normal
0.2
1041
Tumor
0.2
868
Normal
0.2
278
Normal
0.2
467
Tumor
0.2
816
Normal
0.2
232
Normal
0.2
332
Normal
0.2
912
Normal
0.2
866
Normal
0.2
723
Tumor
0.2
185
Tumor
0.2
423
Tumor
0.2
714
Normal
0.2
358
Normal
0.2
357
Tumor
0.2
914
Normal
0.2
952
Normal
0.2
356
Normal
0.2
664
Normal
0.2
982
Normal
0.2
558
Normal
0.2
744
Normal
0.2
428
Normal
0.2
1044
Normal
0.2
728
Normal
0.2
648
Normal
0.2
162
Normal
0.2
388
Normal
0.2
172
Normal
0.2
666
Normal
0.2
882
Normal
0.1
214
Normal
0.1
1014
Normal
0.1
171
Tumor
0.1
142
Normal
0.1
466
Normal
0.1
146
Normal
0.1
722
Normal
0.1
572
Normal
0.1
468
Normal
0.1
818
Normal
0.1
635
Tumor
0.1
286
Normal
0.1
414
Normal
0.1
136
Normal
0.1
665
Tumor
0.1
394
Normal
0.1
384
Normal
0.1
944
Normal
0.1
472
Normal
0.1
375
Tumor
0.1
938
Normal
0.1
432
Normal
0.1
141
Tumor
0.1
364
Normal
0.1
514
Normal
0.1
393
Tumor
0.1
362
Normal
0.1
368
Normal
0.1
124
Normal
0.1
416
Normal
0.1
1022
Normal
0.1
716
Normal
0.1
786
Normal
0.1
1016
Normal
0.1
642
Normal
0.1
352
Normal
0.1
966
Normal
0.1
636
Normal
0.1
686
Normal
0.1
366
Normal
0.1
285
Tumor
0.1
212
Normal
0.1
446
Normal
0.1
564
Normal
0.1
745
Tumor
0.1
138
Normal
0.1
516
Normal
0.1
864
Normal
0.1
1026
Normal
0.1
662
Normal
0.1
412
Normal
0.1
228
Normal
0.1
546
Normal
0.1
824
Normal
0.1
696
Normal
0.1
257
Tumor
0.0
365
Tumor
0.0
863
Tumor
0.0
222
Normal
0.0
484
Normal
0.0
527
Tumor
0.0
958
Normal
0.0
877
Tumor
0.0
272
Normal
0.0
528
Normal
0.0
424
Normal
0.0
422
Normal
0.0
518
Normal
0.0
262
Normal
0.0
396
Normal
0.0
978
Normal
0.0
672
Normal
0.0
218
Normal
0.0
984
Normal
0.0
494
Normal
0.0
526
Normal
0.0
192
Normal
0.0
284
Normal
0.0
112
Tumor
0.0
478
Normal
0.0
433
Tumor
0.0
1032
Normal
0.0
195
Tumor
0.0
391
Tumor
0.0
925
Tumor
0.0
481
Tumor
0.0
926
Normal
0.0
354
Normal
0.0
227
Tumor
0.0
328
Normal
0.0
534
Normal
0.0
924
Normal
0.0
663
Tumor
0.0
968
Normal
0.0
452
Normal
0.0
421
Tumor
0.0
474
Normal
0.0
883
Tumor
0.0
258
Normal
0.0
312
Normal
0.0
1042
Normal
0.0
628
Normal
0.0
574
Normal
0.0
314
Normal
-0.1
913
Tumor
-0.1
884
Normal
-0.1
727
Tumor
-0.1
443
Tumor
-0.1
383
Tumor
-0.1
1015
Tumor
-0.1
127
Tumor
-0.1
313
Tumor
-0.1
563
Tumor
-0.1
857
Tumor
-0.1
268
Normal
-0.1
977
Tumor
-0.1
444
Normal
-0.1
954
Normal
-0.1
188
Normal
-0.1
976
Normal
-0.1
465
Tumor
-0.1
922
Normal
-0.1
975
Tumor
-0.1
191
Tumor
-0.1
126
Normal
-0.1
434
Normal
-0.1
267
Tumor
-0.1
964
Normal
-0.1
1028
Normal
-0.1
852
Normal
-0.1
387
Tumor
-0.1
953
Tumor
-0.1
515
Tumor
-0.1
427
Tumor
-0.1
461
Tumor
-0.2
131
Tumor
-0.2
1045
Tumor
-0.2
224
Normal
-0.2
223
Tumor
-0.2
386
Normal
-0.2
956
Normal
-0.2
471
Tumor
-0.2
498
Normal
-0.2
553
Tumor
-0.2
361
Tumor
-0.2
573
Tumor
-0.2
873
Tumor
-0.2
1021
Tumor
-0.2
1043
Tumor
-0.2
367
Tumor
-0.2
431
Tumor
-0.2
721
Tumor
-0.2
114
Normal
-0.2
1013
Tumor
-0.2
187
Tumor
-0.2
123
Tumor
-0.2
523
Tumor
-0.2
881
Tumor
-0.2
874
Normal
-0.2
217
Tumor
-0.2
464
Normal
-0.2
447
Tumor
-0.3
355
Tumor
-0.3
697
Tumor
-0.3
554
Normal
-0.3
661
Tumor
-0.3
385
Tumor
-0.3
813
Tumor
-0.3
755
Tumor
-0.3
343
Tumor
-0.3
327
Tumor
-0.3
145
Tumor
-0.3
477
Tumor
-0.3
918
Normal
-0.3
865
Tumor
-0.3
161
Tumor
-0.4
851
Tumor
-0.4
487
Tumor
-0.4
536
Normal
-0.4
737
Tumor
-0.4
814
Normal
-0.4
331
Tumor
-0.4
524
Normal
-0.4
937
Tumor
-0.4
297
Tumor
-0.4
916
Normal
-0.4
271
Tumor
-0.4
923
Tumor
-0.4
983
Tumor
-0.4
213
Tumor
-0.4
713
Tumor
-0.4
492
Normal
-0.4
456
Normal
-0.4
415
Tumor
-0.4
221
Tumor
-0.4
965
Tumor
-0.4
277
Tumor
-0.4
311
Tumor
-0.4
351
Tumor
-0.4
533
Tumor
-0.5
451
Tumor
-0.5
724
Normal
-0.5
113
Tumor
-0.5
538
Normal
-0.5
473
Tumor
-0.5
497
Tumor
-0.5
147
Tumor
-0.5
817
Tumor
-0.5
463
Tumor
-0.5
823
Tumor
-0.5
125
Tumor
-0.6
283
Tumor
-0.6
483
Tumor
-0.6
963
Tumor
-0.6
957
Tumor
-0.6
545
Tumor
-0.6
1031
Tumor
-0.6
967
Tumor
-0.6
671
Tumor
-0.7
951
Tumor
-0.7
1025
Tumor
-0.7
363
Tumor
-0.7
567
Tumor
-0.7
525
Tumor
-0.7
917
Tumor
-0.7
921
Tumor
-0.7
537
Tumor
-0.8
211
Tumor
-0.8
455
Tumor
-0.8
517
Tumor
-0.8
535
Tumor
-0.8
743
Tumor
-0.8
491
Tumor
-0.8
341
Tumor
-0.8
435
Tumor
-0.9
395
Tumor
-0.9
647
Tumor
-0.9
425
Tumor
-0.9
943
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
