MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.1 nTPM
HPA Brain:38.3 nTPM
GTEx:31.1 nTPM
FANTOM5:63.2 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:2.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
2586 Male, age 75, left hemisphere 49.1
2828 Female, age 72, unknown 38.5
2666 Male, age 74, left hemisphere 38.4
2411 Female, age 72, unknown 37.4
1870 Female, age 42, unknown 35.6
2019 Male, age 18, unknown 35.4
1827 Male, age 72, unknown 34.6
1830 Male, age 51, unknown 32.8
1833 Male, age 53, unknown 28.6
2219 Male, age 76, both hemispheres 26.0
Dorsal raphe nucleus
nTPM: 32.3
2750 Male, age 76, both hemispheres 34.9
2016 Female, age 72, unknown 33.3
2298 Female, age 72, unknown 32.8
2047 Male, age 72, unknown 31.4
1828 Male, age 53, unknown 29.3
Inferior colliculus
nTPM: 29.6
1890 Male, age 53, unknown 31.5
1848 Female, age 42, unknown 30.6
2097 Female, age 72, unknown 30.1
2849 Male, age 72, unknown 26.1
Median raphe nucleus
nTPM: 23.4
2220 Male, age 76, midline 23.4
Periaquaductal grey, anterior
nTPM: 37.4
2502 Female, age 75, unknown 40.6
1947 Male, age 18, unknown 36.6
1795 Male, age 51, unknown 35.0
Periaquaductal grey, dorsal
nTPM: 26.2
2464 Female, age 72, unknown 30.4
1840 Male, age 53, unknown 28.4
1831 Male, age 72, unknown 25.4
2850 Male, age 76, both hemispheres 20.7
Periaquaductal grey, lateral
nTPM: 27.5
2053 Male, age 18, unknown 28.6
2272 Male, age 74, both hemispheres 27.5
2140 Male, age 76, both hemispheres 26.4
Pretectal area
nTPM: 30.3
2007 Male, age 72, unknown 39.8
2316 Male, age 76, right hemisphere 34.1
1817 Female, age 42, unknown 31.8
2407 Male, age 75, both hemispheres 31.0
1815 Male, age 53, unknown 30.6
1816 Male, age 51, unknown 30.4
2825 Male, age 18, unknown 29.7
1944 Female, age 72, unknown 27.4
2224 Female, age 72, unknown 27.3
2667 Female, age 75, unknown 27.3
2273 Male, age 74, both hemispheres 23.7
Red nucleus
nTPM: 38.3
2588 Male, age 74, left hemisphere 48.4
2503 Female, age 72, unknown 41.6
2785 Male, age 18, unknown 40.2
2227 Male, age 72, unknown 39.6
2769 Male, age 72, unknown 38.9
1904 Male, age 53, unknown 38.2
2584 Male, age 75, left hemisphere 37.5
1865 Male, age 51, unknown 36.8
1821 Female, age 72, unknown 35.8
1954 Female, age 42, unknown 35.0
2725 Female, age 75, unknown 34.6
2823 Male, age 76, right hemisphere 32.9
Substantia nigra
nTPM: 31.5
1851 Male, age 51, unknown 35.7
2583 Male, age 75, right hemisphere 34.0
1916 Female, age 42, unknown 33.1
2590 Female, age 75, unknown 33.1
2665 Male, age 74, both hemispheres 32.5
1941 Male, age 53, unknown 32.2
1889 Female, age 72, unknown 31.2
2699 Male, age 18, unknown 29.9
2409 Female, age 72, unknown 27.3
2241 Male, age 72, unknown 25.6
Superior colliculus
nTPM: 32.7
2664 Male, age 75, both hemispheres 36.8
1796 Male, age 53, unknown 35.7
2668 Female, age 75, unknown 34.4
1995 Male, age 72, unknown 34.2
1913 Female, age 42, unknown 32.3
2587 Male, age 74, left hemisphere 32.2
1895 Male, age 76, right hemisphere 31.9
2261 Male, age 18, unknown 31.8
1839 Male, age 51, unknown 31.3
2087 Female, age 72, unknown 26.5
Ventral tegmental area
nTPM: 32.0
1942 Male, age 51, unknown 34.1
2410 Female, age 72, unknown 33.4
1915 Female, age 42, unknown 32.9
2223 Female, age 72, unknown 32.7
2021 Male, age 53, unknown 32.1
2218 Male, age 76, both hemispheres 26.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.1
Samples: 139

Max nTPM: 55.8
Min nTPM: 13.2
Std nTPM: 7.9
Median nTPM: 30.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 55.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 55.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 53.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 53.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 49.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 48.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 45.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 43.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 43.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.2
FF:10158-103A5 76 years, female 63.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.2
Samples: 4

Max nTPM: 8.6
Min nTPM: 0.0
Sample A Female 8.1
Sample B Female 0.0
Sample C Male 8.6
Sample D Male 0.0
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 7.9
Min nTPM: 0.6
Sample A Female 6.0
Sample B Female 2.9
Sample C Male 7.9
Sample D Male 0.6
Periaqueductal gray
nTPM: 1.4
Samples: 3

Max nTPM: 4.2
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 4.2
Sample D Male 0.0
Superior colliculi
nTPM: 4.6
Samples: 4

Max nTPM: 8.7
Min nTPM: 0.9
Sample A Female 8.7
Sample B Female 0.9
Sample C Male 3.5
Sample D Male 5.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.0
Samples: 4

Max nTPM: 2.9
Min nTPM: 0.6
Sample A Male 2.9
Sample B Male 0.6
Sample C Female 1.7
Sample D Female 2.7

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