MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.4 nTPM
HPA Brain:34.6 nTPM
GTEx:51.4 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:36.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2219 Male, age 76, both hemispheres 54.3
2411 Female, age 72, unknown 31.3
1827 Male, age 72, unknown 27.0
2019 Male, age 18, unknown 26.1
1870 Female, age 42, unknown 25.4
1833 Male, age 53, unknown 24.1
2666 Male, age 74, left hemisphere 24.0
1830 Male, age 51, unknown 23.8
2828 Female, age 72, unknown 22.8
2586 Male, age 75, left hemisphere 22.0
Dorsal raphe nucleus
nTPM: 24.7
2298 Female, age 72, unknown 28.0
2047 Male, age 72, unknown 26.7
1828 Male, age 53, unknown 24.1
2016 Female, age 72, unknown 22.3
2750 Male, age 76, both hemispheres 22.3
Inferior colliculus
nTPM: 24.2
2097 Female, age 72, unknown 26.7
1848 Female, age 42, unknown 26.3
2849 Male, age 72, unknown 23.3
1890 Male, age 53, unknown 20.6
Median raphe nucleus
nTPM: 34.6
2220 Male, age 76, midline 34.6
Periaquaductal grey, anterior
nTPM: 26.4
1947 Male, age 18, unknown 32.3
2502 Female, age 75, unknown 24.0
1795 Male, age 51, unknown 22.8
Periaquaductal grey, dorsal
nTPM: 22.4
2464 Female, age 72, unknown 23.9
1840 Male, age 53, unknown 23.3
2850 Male, age 76, both hemispheres 21.4
1831 Male, age 72, unknown 20.8
Periaquaductal grey, lateral
nTPM: 21.9
2053 Male, age 18, unknown 23.1
2272 Male, age 74, both hemispheres 21.6
2140 Male, age 76, both hemispheres 21.1
Pretectal area
nTPM: 24.3
2007 Male, age 72, unknown 28.9
1944 Female, age 72, unknown 28.3
2224 Female, age 72, unknown 28.2
1816 Male, age 51, unknown 26.4
1817 Female, age 42, unknown 26.3
1815 Male, age 53, unknown 25.3
2825 Male, age 18, unknown 24.6
2273 Male, age 74, both hemispheres 21.7
2667 Female, age 75, unknown 21.1
2407 Male, age 75, both hemispheres 20.9
2316 Male, age 76, right hemisphere 15.7
Red nucleus
nTPM: 25.8
1821 Female, age 72, unknown 32.4
1865 Male, age 51, unknown 29.0
2725 Female, age 75, unknown 29.0
1954 Female, age 42, unknown 28.5
2503 Female, age 72, unknown 28.4
2584 Male, age 75, left hemisphere 25.5
1904 Male, age 53, unknown 25.2
2769 Male, age 72, unknown 24.7
2227 Male, age 72, unknown 24.5
2785 Male, age 18, unknown 23.0
2588 Male, age 74, left hemisphere 22.5
2823 Male, age 76, right hemisphere 16.4
Substantia nigra
nTPM: 29.5
1916 Female, age 42, unknown 36.9
1941 Male, age 53, unknown 34.3
1889 Female, age 72, unknown 31.9
1851 Male, age 51, unknown 30.9
2241 Male, age 72, unknown 30.8
2409 Female, age 72, unknown 28.2
2583 Male, age 75, right hemisphere 27.0
2590 Female, age 75, unknown 25.9
2699 Male, age 18, unknown 25.1
2665 Male, age 74, both hemispheres 24.1
Superior colliculus
nTPM: 24.1
2668 Female, age 75, unknown 29.3
1796 Male, age 53, unknown 28.3
1895 Male, age 76, right hemisphere 25.6
1839 Male, age 51, unknown 24.7
2261 Male, age 18, unknown 23.8
1913 Female, age 42, unknown 23.3
2087 Female, age 72, unknown 22.2
2664 Male, age 75, both hemispheres 21.7
2587 Male, age 74, left hemisphere 21.4
1995 Male, age 72, unknown 20.7
Ventral tegmental area
nTPM: 26.8
2410 Female, age 72, unknown 34.8
1915 Female, age 42, unknown 30.0
2223 Female, age 72, unknown 26.0
1942 Male, age 51, unknown 25.2
2021 Male, age 53, unknown 23.4
2218 Male, age 76, both hemispheres 21.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.4
Samples: 139

Max nTPM: 198.6
Min nTPM: 26.3
Std nTPM: 24.3
Median nTPM: 45.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 198.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 177.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 142.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 118.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 106.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 92.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 91.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 90.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 83.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 83.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 82.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.0
Samples: 4

Max nTPM: 17.0
Min nTPM: 7.3
Sample A Female 17.0
Sample B Female 7.3
Sample C Male 10.9
Sample D Male 8.8
Midbrain
nTPM: 8.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 6.6
Sample A Female 9.0
Sample B Female 7.5
Sample C Male 6.6
Sample D Male 12.0
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 11.8
Min nTPM: 8.1
Sample B Female 8.1
Sample C Male 9.7
Sample D Male 11.8
Superior colliculi
nTPM: 8.6
Samples: 4

Max nTPM: 12.1
Min nTPM: 4.4
Sample A Female 12.1
Sample B Female 4.4
Sample C Male 6.6
Sample D Male 11.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 38.7
Min nTPM: 33.8
Sample A Male 37.1
Sample B Male 35.5
Sample C Female 33.8
Sample D Female 38.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68798121 Antisense, RP_050215_01_G09, Mouse strain C57BL/6J (56 days, male) 0.2

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