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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GALNT11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
50.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
42.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GALNT11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
231
Samples
Sample
Description
TPM
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
2.0
572
Normal
1.9
568
Normal
1.9
327
Tumor
1.4
564
Normal
1.4
491
Tumor
1.3
558
Normal
1.3
563
Tumor
1.1
573
Tumor
1.1
641
Tumor
1.0
328
Normal
1.0
1027
Tumor
0.9
527
Tumor
0.8
743
Tumor
0.8
574
Normal
0.8
671
Tumor
0.7
257
Tumor
0.7
364
Normal
0.6
695
Tumor
0.6
868
Normal
0.6
881
Tumor
0.6
924
Normal
0.6
411
Tumor
0.6
647
Tumor
0.6
862
Normal
0.6
926
Normal
0.6
863
Tumor
0.6
356
Normal
0.6
1021
Tumor
0.5
864
Normal
0.5
412
Normal
0.5
557
Tumor
0.5
665
Tumor
0.5
481
Tumor
0.5
866
Normal
0.5
911
Tumor
0.5
224
Normal
0.5
357
Tumor
0.4
913
Tumor
0.4
445
Tumor
0.4
342
Normal
0.4
314
Normal
0.4
416
Normal
0.4
741
Tumor
0.4
285
Tumor
0.4
874
Normal
0.4
388
Normal
0.4
951
Tumor
0.4
261
Tumor
0.4
964
Normal
0.4
615
Tumor
0.4
191
Tumor
0.4
428
Normal
0.4
852
Normal
0.4
432
Normal
0.4
818
Normal
0.4
816
Normal
0.4
517
Tumor
0.3
213
Tumor
0.3
391
Tumor
0.3
721
Tumor
0.3
211
Tumor
0.3
953
Tumor
0.3
642
Normal
0.3
617
Tumor
0.3
968
Normal
0.3
713
Tumor
0.3
858
Normal
0.3
482
Normal
0.3
312
Normal
0.3
824
Normal
0.3
873
Tumor
0.3
635
Tumor
0.3
425
Tumor
0.3
958
Normal
0.3
436
Normal
0.3
722
Normal
0.3
487
Tumor
0.3
311
Tumor
0.3
271
Tumor
0.3
471
Tumor
0.3
727
Tumor
0.3
666
Normal
0.3
851
Tumor
0.3
883
Tumor
0.3
865
Tumor
0.3
884
Normal
0.3
386
Normal
0.3
426
Normal
0.2
223
Tumor
0.2
214
Normal
0.2
358
Normal
0.2
567
Tumor
0.2
918
Normal
0.2
221
Tumor
0.2
922
Normal
0.2
462
Normal
0.2
663
Tumor
0.2
385
Tumor
0.2
396
Normal
0.2
697
Tumor
0.2
277
Tumor
0.2
867
Tumor
0.2
332
Normal
0.2
616
Normal
0.2
414
Normal
0.2
498
Normal
0.2
523
Tumor
0.2
423
Tumor
0.2
483
Tumor
0.2
278
Normal
0.2
744
Normal
0.2
192
Normal
0.2
446
Normal
0.2
877
Tumor
0.2
422
Normal
0.2
686
Normal
0.2
427
Tumor
0.2
387
Tumor
0.2
394
Normal
0.2
627
Tumor
0.1
424
Normal
0.1
354
Normal
0.1
195
Tumor
0.1
196
Normal
0.1
227
Tumor
0.1
976
Normal
0.1
545
Tumor
0.1
447
Tumor
0.1
878
Normal
0.1
267
Tumor
0.1
231
Tumor
0.1
716
Normal
0.1
218
Normal
0.1
392
Normal
0.1
297
Tumor
0.1
431
Tumor
0.1
222
Normal
0.1
648
Normal
0.1
966
Normal
0.1
696
Normal
0.1
882
Normal
0.1
413
Tumor
0.0
823
Tumor
0.0
685
Tumor
0.0
1041
Tumor
0.0
258
Normal
0.0
353
Tumor
0.0
944
Normal
0.0
672
Normal
0.0
283
Tumor
0.0
628
Normal
0.0
975
Tumor
0.0
618
Normal
0.0
955
Tumor
0.0
714
Normal
0.0
162
Normal
0.0
472
Normal
0.0
217
Tumor
0.0
1043
Tumor
0.0
148
Normal
0.0
728
Normal
0.0
536
Normal
0.0
393
Tumor
0.0
477
Tumor
0.0
1045
Tumor
0.0
723
Tumor
0.0
228
Normal
0.0
534
Normal
0.0
186
Normal
0.0
172
Normal
0.0
232
Normal
0.0
313
Tumor
0.0
528
Normal
0.0
535
Tumor
0.0
636
Normal
0.0
857
Tumor
0.0
957
Tumor
0.0
497
Tumor
0.0
662
Normal
0.0
488
Normal
0.0
492
Normal
0.0
724
Normal
0.0
344
Normal
0.0
272
Normal
-0.1
435
Tumor
-0.1
912
Normal
-0.1
363
Tumor
-0.1
914
Normal
-0.1
493
Tumor
-0.1
664
Normal
-0.1
474
Normal
-0.1
434
Normal
-0.1
352
Normal
-0.1
421
Tumor
-0.1
661
Tumor
-0.1
268
Normal
-0.1
461
Tumor
-0.1
484
Normal
-0.1
737
Tumor
-0.1
494
Normal
-0.1
478
Normal
-0.1
738
Normal
-0.1
954
Normal
-0.1
923
Tumor
-0.1
1025
Tumor
-0.1
395
Tumor
-0.1
965
Tumor
-0.1
331
Tumor
-0.1
1044
Normal
-0.1
742
Normal
-0.1
298
Normal
-0.1
284
Normal
-0.1
916
Normal
-0.1
861
Tumor
-0.1
415
Tumor
-0.1
938
Normal
-0.1
1046
Normal
-0.1
956
Normal
-0.2
515
Tumor
-0.2
1042
Normal
-0.2
698
Normal
-0.2
943
Tumor
-0.2
286
Normal
-0.2
1028
Normal
-0.2
546
Normal
-0.2
433
Tumor
-0.2
448
Normal
-0.2
212
Normal
-0.2
262
Normal
-0.2
513
Tumor
-0.2
444
Normal
-0.2
355
Tumor
-0.2
921
Tumor
-0.2
518
Normal
-0.2
963
Tumor
-0.2
553
Tumor
-0.2
443
Tumor
-0.3
715
Tumor
-0.3
815
Tumor
-0.3
514
Normal
-0.3
915
Tumor
-0.3
1032
Normal
-0.3
917
Tumor
-0.3
1026
Normal
-0.3
952
Normal
-0.3
524
Normal
-0.3
341
Tumor
-0.3
937
Tumor
-0.4
526
Normal
-0.4
351
Tumor
-0.4
188
Normal
-0.4
817
Tumor
-0.4
1022
Normal
-0.4
1031
Tumor
-0.4
533
Tumor
-0.5
538
Normal
-0.6
537
Tumor
-0.6
516
Normal
-0.6
161
Tumor
-0.6
473
Tumor
-0.7
171
Tumor
-0.7
525
Tumor
-0.7
967
Tumor
-0.7
554
Normal
-0.8
185
Tumor
-0.8
187
Tumor
-0.8
925
Tumor
-1.0
343
Tumor
-1.2
147
Tumor
-1.2
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.