MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.3 nTPM
HPA Brain:16.1 nTPM
GTEx:2.3 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:9.2 nTPM
Mouse:4.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.5
1827 Male, age 72, unknown 14.6
2586 Male, age 75, left hemisphere 13.7
2411 Female, age 72, unknown 13.3
2219 Male, age 76, both hemispheres 13.1
1833 Male, age 53, unknown 12.8
1870 Female, age 42, unknown 12.5
2828 Female, age 72, unknown 12.4
2666 Male, age 74, left hemisphere 12.2
1830 Male, age 51, unknown 10.6
2019 Male, age 18, unknown 9.6
Dorsal raphe nucleus
nTPM: 12.7
2298 Female, age 72, unknown 13.9
2047 Male, age 72, unknown 13.8
1828 Male, age 53, unknown 13.1
2016 Female, age 72, unknown 12.3
2750 Male, age 76, both hemispheres 10.6
Inferior colliculus
nTPM: 16.1
1848 Female, age 42, unknown 17.5
2097 Female, age 72, unknown 17.0
2849 Male, age 72, unknown 16.8
1890 Male, age 53, unknown 13.0
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Periaquaductal grey, anterior
nTPM: 14.2
1947 Male, age 18, unknown 16.7
1795 Male, age 51, unknown 12.9
2502 Female, age 75, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 14.8
1840 Male, age 53, unknown 17.7
2850 Male, age 76, both hemispheres 15.0
1831 Male, age 72, unknown 14.2
2464 Female, age 72, unknown 12.5
Periaquaductal grey, lateral
nTPM: 14.4
2053 Male, age 18, unknown 16.5
2140 Male, age 76, both hemispheres 15.9
2272 Male, age 74, both hemispheres 10.8
Pretectal area
nTPM: 14.0
2224 Female, age 72, unknown 16.9
2407 Male, age 75, both hemispheres 16.4
1816 Male, age 51, unknown 15.0
2825 Male, age 18, unknown 14.9
2316 Male, age 76, right hemisphere 14.2
2273 Male, age 74, both hemispheres 13.8
1817 Female, age 42, unknown 13.2
2007 Male, age 72, unknown 13.2
1944 Female, age 72, unknown 12.7
1815 Male, age 53, unknown 12.6
2667 Female, age 75, unknown 11.2
Red nucleus
nTPM: 9.9
2584 Male, age 75, left hemisphere 11.4
2725 Female, age 75, unknown 11.4
1821 Female, age 72, unknown 11.0
2769 Male, age 72, unknown 10.7
2503 Female, age 72, unknown 10.2
1954 Female, age 42, unknown 9.7
1904 Male, age 53, unknown 9.6
2227 Male, age 72, unknown 9.4
2823 Male, age 76, right hemisphere 9.4
1865 Male, age 51, unknown 9.0
2785 Male, age 18, unknown 8.8
2588 Male, age 74, left hemisphere 8.6
Substantia nigra
nTPM: 13.0
2583 Male, age 75, right hemisphere 15.9
2590 Female, age 75, unknown 14.6
1916 Female, age 42, unknown 14.1
1889 Female, age 72, unknown 13.6
1941 Male, age 53, unknown 13.1
2241 Male, age 72, unknown 12.6
1851 Male, age 51, unknown 12.4
2699 Male, age 18, unknown 12.3
2665 Male, age 74, both hemispheres 11.8
2409 Female, age 72, unknown 9.4
Superior colliculus
nTPM: 13.3
1839 Male, age 51, unknown 18.0
1895 Male, age 76, right hemisphere 15.1
1796 Male, age 53, unknown 14.6
2668 Female, age 75, unknown 13.7
2261 Male, age 18, unknown 13.5
2664 Male, age 75, both hemispheres 12.3
2087 Female, age 72, unknown 12.1
2587 Male, age 74, left hemisphere 11.7
1913 Female, age 42, unknown 11.3
1995 Male, age 72, unknown 10.7
Ventral tegmental area
nTPM: 12.7
1915 Female, age 42, unknown 15.0
2218 Male, age 76, both hemispheres 13.3
1942 Male, age 51, unknown 12.4
2410 Female, age 72, unknown 12.4
2021 Male, age 53, unknown 12.1
2223 Female, age 72, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.3
Samples: 139

Max nTPM: 4.1
Min nTPM: 1.3
Std nTPM: 0.5
Median nTPM: 2.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 4.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 3.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 3.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 3.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 3.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 3.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 3.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 3.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 3.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.6
Samples: 4

Max nTPM: 8.0
Min nTPM: 7.3
Sample A Female 8.0
Sample B Female 7.3
Sample C Male 7.8
Sample D Male 7.4
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.6
Sample A Female 8.8
Sample B Female 7.6
Sample C Male 10.4
Sample D Male 8.8
Periaqueductal gray
nTPM: 7.9
Samples: 3

Max nTPM: 8.5
Min nTPM: 7.5
Sample B Female 7.8
Sample C Male 8.5
Sample D Male 7.5
Superior colliculi
nTPM: 9.2
Samples: 4

Max nTPM: 9.9
Min nTPM: 8.5
Sample A Female 9.1
Sample B Female 8.5
Sample C Male 9.9
Sample D Male 9.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.9
Sample A Male 3.9
Sample B Male 5.1
Sample C Female 4.5
Sample D Female 5.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69445427 Antisense, RP_050419_01_B06, Mouse strain C57BL/6J (56 days, male) 0.2

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