MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:124.6 nTPM
HPA Brain:83.7 nTPM
GTEx:124.6 nTPM
FANTOM5:81.1 Scaled Tags Per Million
Pig:81.3 nTPM
Mouse:291.0 nTPM
Allen mouse:12.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 83.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.0
2019 Male, age 18, unknown 86.0
2411 Female, age 72, unknown 72.6
1827 Male, age 72, unknown 63.1
2219 Male, age 76, both hemispheres 61.7
1870 Female, age 42, unknown 57.6
1830 Male, age 51, unknown 56.6
1833 Male, age 53, unknown 54.6
2828 Female, age 72, unknown 50.8
2666 Male, age 74, left hemisphere 46.4
2586 Male, age 75, left hemisphere 41.0
Dorsal raphe nucleus
nTPM: 64.0
2298 Female, age 72, unknown 77.8
1828 Male, age 53, unknown 69.0
2047 Male, age 72, unknown 60.0
2750 Male, age 76, both hemispheres 59.2
2016 Female, age 72, unknown 54.1
Inferior colliculus
nTPM: 65.5
2097 Female, age 72, unknown 81.7
1890 Male, age 53, unknown 67.4
1848 Female, age 42, unknown 60.7
2849 Male, age 72, unknown 52.4
Median raphe nucleus
nTPM: 59.6
2220 Male, age 76, midline 59.6
Periaquaductal grey, anterior
nTPM: 61.5
1947 Male, age 18, unknown 65.9
2502 Female, age 75, unknown 61.9
1795 Male, age 51, unknown 56.8
Periaquaductal grey, dorsal
nTPM: 51.1
2464 Female, age 72, unknown 54.1
1840 Male, age 53, unknown 52.4
2850 Male, age 76, both hemispheres 50.4
1831 Male, age 72, unknown 47.7
Periaquaductal grey, lateral
nTPM: 53.8
2272 Male, age 74, both hemispheres 65.9
2053 Male, age 18, unknown 48.9
2140 Male, age 76, both hemispheres 46.7
Pretectal area
nTPM: 67.3
2007 Male, age 72, unknown 87.1
1944 Female, age 72, unknown 83.8
1817 Female, age 42, unknown 79.7
1816 Male, age 51, unknown 75.5
2667 Female, age 75, unknown 74.7
1815 Male, age 53, unknown 67.9
2273 Male, age 74, both hemispheres 65.5
2224 Female, age 72, unknown 62.3
2316 Male, age 76, right hemisphere 51.9
2825 Male, age 18, unknown 46.5
2407 Male, age 75, both hemispheres 45.0
Red nucleus
nTPM: 59.4
1821 Female, age 72, unknown 76.7
2785 Male, age 18, unknown 70.2
2725 Female, age 75, unknown 64.2
2823 Male, age 76, right hemisphere 60.0
1865 Male, age 51, unknown 59.0
1954 Female, age 42, unknown 58.0
1904 Male, age 53, unknown 57.9
2503 Female, age 72, unknown 57.9
2769 Male, age 72, unknown 54.8
2227 Male, age 72, unknown 54.1
2584 Male, age 75, left hemisphere 51.3
2588 Male, age 74, left hemisphere 49.3
Substantia nigra
nTPM: 83.7
2241 Male, age 72, unknown 112.2
1916 Female, age 42, unknown 111.3
1941 Male, age 53, unknown 91.9
1889 Female, age 72, unknown 91.2
2409 Female, age 72, unknown 90.1
1851 Male, age 51, unknown 89.4
2665 Male, age 74, both hemispheres 65.4
2699 Male, age 18, unknown 64.2
2590 Female, age 75, unknown 62.4
2583 Male, age 75, right hemisphere 58.5
Superior colliculus
nTPM: 57.0
2087 Female, age 72, unknown 71.6
1895 Male, age 76, right hemisphere 65.6
2587 Male, age 74, left hemisphere 64.4
2668 Female, age 75, unknown 59.1
1796 Male, age 53, unknown 58.1
2261 Male, age 18, unknown 57.9
1839 Male, age 51, unknown 54.7
1913 Female, age 42, unknown 50.8
1995 Male, age 72, unknown 46.4
2664 Male, age 75, both hemispheres 41.6
Ventral tegmental area
nTPM: 69.1
2410 Female, age 72, unknown 90.8
1915 Female, age 42, unknown 77.3
2218 Male, age 76, both hemispheres 74.2
1942 Male, age 51, unknown 61.6
2223 Female, age 72, unknown 58.1
2021 Male, age 53, unknown 52.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 124.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.6
Samples: 139

Max nTPM: 260.7
Min nTPM: 69.6
Std nTPM: 32.6
Median nTPM: 119.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 260.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 217.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 214.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 208.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 208.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 202.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 190.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 185.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 183.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 178.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 176.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 81.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 81.1
FF:10158-103A5 76 years, female 81.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 81.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.7
Samples: 4

Max nTPM: 84.7
Min nTPM: 62.2
Sample A Female 84.7
Sample B Female 62.2
Sample C Male 70.1
Sample D Male 65.8
Midbrain
nTPM: 76.8
Samples: 4

Max nTPM: 79.1
Min nTPM: 74.3
Sample A Female 79.1
Sample B Female 79.1
Sample C Male 74.3
Sample D Male 74.8
Periaqueductal gray
nTPM: 65.2
Samples: 3

Max nTPM: 67.7
Min nTPM: 61.0
Sample B Female 66.9
Sample C Male 67.7
Sample D Male 61.0
Superior colliculi
nTPM: 81.2
Samples: 4

Max nTPM: 94.1
Min nTPM: 64.8
Sample A Female 87.2
Sample B Female 64.8
Sample C Male 94.1
Sample D Male 78.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 291.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 291.0
Samples: 4

Max nTPM: 298.9
Min nTPM: 282.6
Sample A Male 292.3
Sample B Male 298.9
Sample C Female 282.6
Sample D Female 290.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
77371763 Antisense, RP_070116_01_D05, Mouse strain C57BL/6J (56 days, male) 18.1
68080679 Antisense, RP_040929_01_D09, Mouse strain C57BL/6J (56 days, male) 12.6
71213788 Antisense, RP_050816_04_F06, Mouse strain C57BL/6J (56 days, male) 7.9

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