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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRAMD1C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRAMD1C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.3
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
2.1
427
Tumor
1.5
351
Tumor
1.0
227
Tumor
0.9
395
Tumor
0.8
862
Normal
0.8
695
Tumor
0.7
487
Tumor
0.7
535
Tumor
0.7
468
Normal
0.7
944
Normal
0.7
484
Normal
0.7
573
Tumor
0.7
385
Tumor
0.6
391
Tumor
0.6
464
Normal
0.6
186
Normal
0.6
452
Normal
0.5
223
Tumor
0.5
443
Tumor
0.5
957
Tumor
0.5
965
Tumor
0.5
742
Normal
0.5
142
Normal
0.5
1031
Tumor
0.5
113
Tumor
0.5
723
Tumor
0.5
963
Tumor
0.5
456
Normal
0.5
567
Tumor
0.4
431
Tumor
0.4
383
Tumor
0.4
557
Tumor
0.4
864
Normal
0.4
865
Tumor
0.4
353
Tumor
0.4
465
Tumor
0.4
162
Normal
0.4
211
Tumor
0.4
137
Tumor
0.4
954
Normal
0.4
148
Normal
0.4
743
Tumor
0.4
413
Tumor
0.4
285
Tumor
0.4
741
Tumor
0.4
488
Normal
0.4
367
Tumor
0.4
926
Normal
0.4
922
Normal
0.4
636
Normal
0.4
818
Normal
0.4
866
Normal
0.4
571
Tumor
0.4
445
Tumor
0.4
396
Normal
0.4
925
Tumor
0.4
327
Tumor
0.3
938
Normal
0.3
526
Normal
0.3
172
Normal
0.3
727
Tumor
0.3
513
Tumor
0.3
388
Normal
0.3
883
Tumor
0.3
494
Normal
0.3
466
Normal
0.3
188
Normal
0.3
756
Normal
0.3
868
Normal
0.3
467
Tumor
0.3
913
Tumor
0.3
357
Tumor
0.3
355
Tumor
0.3
824
Normal
0.3
141
Tumor
0.3
136
Normal
0.3
524
Normal
0.3
728
Normal
0.3
232
Normal
0.3
852
Normal
0.3
738
Normal
0.3
258
Normal
0.3
447
Tumor
0.3
423
Tumor
0.3
744
Normal
0.3
967
Tumor
0.3
858
Normal
0.3
877
Tumor
0.3
297
Tumor
0.3
686
Normal
0.2
376
Normal
0.2
368
Normal
0.2
436
Normal
0.2
786
Normal
0.2
375
Tumor
0.2
472
Normal
0.2
146
Normal
0.2
955
Tumor
0.2
432
Normal
0.2
918
Normal
0.2
881
Tumor
0.2
125
Tumor
0.2
394
Normal
0.2
387
Tumor
0.2
778
Normal
0.2
952
Normal
0.2
446
Normal
0.2
386
Normal
0.2
471
Tumor
0.2
716
Normal
0.2
498
Normal
0.2
563
Tumor
0.2
1022
Normal
0.2
714
Normal
0.2
696
Normal
0.2
1028
Normal
0.2
461
Tumor
0.2
384
Normal
0.1
161
Tumor
0.1
514
Normal
0.1
724
Normal
0.1
262
Normal
0.1
564
Normal
0.1
924
Normal
0.1
483
Tumor
0.1
313
Tumor
0.1
1026
Normal
0.1
745
Tumor
0.1
857
Tumor
0.1
493
Tumor
0.1
721
Tumor
0.1
572
Normal
0.1
393
Tumor
0.1
123
Tumor
0.1
411
Tumor
0.1
642
Normal
0.1
362
Normal
0.1
392
Normal
0.1
912
Normal
0.1
616
Normal
0.1
132
Normal
0.1
518
Normal
0.1
523
Tumor
0.1
272
Normal
0.1
283
Tumor
0.1
618
Normal
0.1
361
Tumor
0.1
984
Normal
0.1
1014
Normal
0.1
956
Normal
0.0
451
Tumor
0.0
982
Normal
0.0
185
Tumor
0.0
517
Tumor
0.0
343
Tumor
0.0
412
Normal
0.0
497
Tumor
0.0
746
Normal
0.0
568
Normal
0.0
867
Tumor
0.0
516
Normal
0.0
356
Normal
0.0
537
Tumor
0.0
138
Normal
0.0
628
Normal
0.0
1032
Normal
0.0
978
Normal
0.0
816
Normal
0.0
874
Normal
0.0
261
Tumor
0.0
697
Tumor
0.0
1025
Tumor
0.0
187
Tumor
0.0
964
Normal
0.0
823
Tumor
0.0
271
Tumor
0.0
648
Normal
0.0
722
Normal
0.0
1042
Normal
0.0
923
Tumor
0.0
911
Tumor
0.0
662
Normal
0.0
534
Normal
0.0
365
Tumor
0.0
131
Tumor
0.0
366
Normal
0.0
473
Tumor
0.0
311
Tumor
0.0
492
Normal
0.0
462
Normal
0.0
478
Normal
0.0
421
Tumor
0.0
268
Normal
0.0
916
Normal
0.0
477
Tumor
0.0
664
Normal
0.0
444
Normal
0.0
863
Tumor
-0.1
545
Tumor
-0.1
434
Normal
-0.1
975
Tumor
-0.1
433
Tumor
-0.1
415
Tumor
-0.1
666
Normal
-0.1
1045
Tumor
-0.1
647
Tumor
-0.1
147
Tumor
-0.1
777
Tumor
-0.1
1016
Normal
-0.1
277
Tumor
-0.1
672
Normal
-0.1
685
Tumor
-0.1
976
Normal
-0.1
558
Normal
-0.1
455
Tumor
-0.1
554
Normal
-0.1
884
Normal
-0.1
574
Normal
-0.1
755
Tumor
-0.1
463
Tumor
-0.1
328
Normal
-0.1
482
Normal
-0.1
953
Tumor
-0.1
958
Normal
-0.1
267
Tumor
-0.1
481
Tumor
-0.1
873
Tumor
-0.1
617
Tumor
-0.2
861
Tumor
-0.2
641
Tumor
-0.2
882
Normal
-0.2
663
Tumor
-0.2
528
Normal
-0.2
527
Tumor
-0.2
635
Tumor
-0.2
364
Normal
-0.2
713
Tumor
-0.2
128
Normal
-0.2
1013
Tumor
-0.2
627
Tumor
-0.2
977
Tumor
-0.2
1044
Normal
-0.2
474
Normal
-0.2
127
Tumor
-0.2
943
Tumor
-0.2
937
Tumor
-0.2
966
Normal
-0.2
546
Normal
-0.2
424
Normal
-0.2
525
Tumor
-0.2
814
Normal
-0.2
416
Normal
-0.2
1027
Tumor
-0.2
212
Normal
-0.2
615
Tumor
-0.3
661
Tumor
-0.3
968
Normal
-0.3
715
Tumor
-0.3
851
Tumor
-0.3
491
Tumor
-0.3
981
Tumor
-0.3
515
Tumor
-0.3
228
Normal
-0.3
951
Tumor
-0.3
813
Tumor
-0.3
737
Tumor
-0.3
171
Tumor
-0.3
284
Normal
-0.3
1021
Tumor
-0.3
533
Tumor
-0.3
538
Normal
-0.3
1046
Normal
-0.3
363
Tumor
-0.3
553
Tumor
-0.4
983
Tumor
-0.4
224
Normal
-0.4
536
Normal
-0.4
785
Tumor
-0.4
878
Normal
-0.4
915
Tumor
-0.4
352
Normal
-0.4
428
Normal
-0.4
354
Normal
-0.4
286
Normal
-0.4
1041
Tumor
-0.4
112
Tumor
-0.4
344
Normal
-0.4
341
Tumor
-0.4
358
Normal
-0.4
448
Normal
-0.4
921
Tumor
-0.4
435
Tumor
-0.5
1015
Tumor
-0.5
671
Tumor
-0.5
126
Normal
-0.5
817
Tumor
-0.5
422
Normal
-0.6
425
Tumor
-0.6
135
Tumor
-0.6
917
Tumor
-0.6
114
Normal
-0.6
312
Normal
-0.6
914
Normal
-0.6
698
Normal
-0.6
111
Normal
-0.7
314
Normal
-0.7
145
Tumor
-0.7
1043
Tumor
-0.7
342
Normal
-0.7
414
Normal
-0.7
815
Tumor
-0.8
332
Normal
-0.8
665
Tumor
-0.8
298
Normal
-0.8
278
Normal
-0.8
426
Normal
-0.8
257
Tumor
-0.9
124
Normal
-1.0
231
Tumor
-1.1
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
