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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFAF3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
388.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
258.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
216.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
184.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
159.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
149.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
139.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
135.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
133.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
131.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
130.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
130.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
126.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
125.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
125.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
122.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
121.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
120.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
120.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
120.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
119.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
117.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
117.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
116.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
114.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
111.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
110.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
110.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
110.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
107.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
107.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
107.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
106.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
105.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
104.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
104.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
104.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
103.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
102.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
101.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
101.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
100.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
100.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
98.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
98.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
97.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
97.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
97.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
96.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
96.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
95.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
95.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
94.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
94.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
92.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
92.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
92.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
91.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
91.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
90.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
90.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
90.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
90.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
90.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
88.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
86.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
86.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
85.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
84.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
84.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
84.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
84.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
84.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
83.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
83.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
82.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
82.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
82.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
82.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
81.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
81.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
81.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
81.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
80.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
80.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
80.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
79.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
78.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
77.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
77.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
77.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
77.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
77.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
76.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
76.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
76.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
76.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
76.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
75.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
75.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
75.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
75.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
74.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
74.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
74.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
74.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
74.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
73.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
73.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
73.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
73.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
73.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
73.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
73.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
72.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
72.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
72.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
72.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
71.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
71.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
71.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
70.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
69.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
69.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
69.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
69.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
68.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
68.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
68.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
68.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
68.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
68.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
67.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
66.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
66.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
65.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
65.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
65.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
65.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
65.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
64.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
64.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
64.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
64.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
64.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
64.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
63.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
63.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
63.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
62.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
62.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
61.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
61.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
61.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
61.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
61.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
61.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
61.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
61.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
61.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
60.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
60.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
60.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
59.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
59.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
59.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
58.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
58.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
58.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
58.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
58.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
58.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
58.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
58.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
58.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
58.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
58.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
58.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
58.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
57.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
57.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
57.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
57.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
56.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
56.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
56.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
56.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
56.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
56.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
56.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
56.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
56.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
56.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
55.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
55.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
55.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
55.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
55.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
55.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
55.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
55.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
55.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
54.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
54.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
54.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
54.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
54.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
54.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
54.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
53.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
53.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
53.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
53.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
53.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
53.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
52.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
52.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
52.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
52.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
52.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
52.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
52.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
51.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
51.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
51.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
51.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
51.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
51.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
51.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
50.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
50.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
50.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
50.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
49.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
49.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
49.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
49.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
48.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
48.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
47.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
47.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
47.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
47.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
47.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
47.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
46.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
46.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
45.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
45.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
45.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
45.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
45.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
45.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
45.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
44.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
44.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
44.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
43.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
43.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
42.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
41.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
41.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
41.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
41.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
41.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
40.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
40.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
40.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
38.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
37.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
37.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
36.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
36.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
35.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
35.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
32.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
28.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFAF3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.8
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
148.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
136.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
122.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
111.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
109.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
107.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
103.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
100.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
97.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
96.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
96.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
90.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
89.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
88.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
87.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
86.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
85.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
84.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
83.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
83.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
81.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
81.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
80.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
79.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
78.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
76.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
76.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
75.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
74.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
74.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
72.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
72.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
71.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
71.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
71.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
70.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
69.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
69.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
69.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
69.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
69.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
68.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
68.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
67.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
67.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
65.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
64.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
63.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
62.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
62.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
61.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
60.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
60.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
59.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
58.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
58.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
58.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
58.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
57.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
57.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
57.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
56.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
56.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
56.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
55.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
55.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
54.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
54.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
54.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
54.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
53.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
53.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
53.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
52.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
52.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
52.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
51.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
51.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
51.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
50.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
49.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
49.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
48.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
48.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
48.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
48.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
48.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
47.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
47.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
47.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
47.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
47.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
46.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
46.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
46.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
46.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
45.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
45.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
45.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
45.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
44.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
44.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
44.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
43.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
42.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
42.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
42.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
41.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
41.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
41.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
41.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
41.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
41.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
40.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
40.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
40.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
38.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
38.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
38.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
38.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
37.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
37.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
37.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
37.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
36.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
36.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
33.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.5
491
Tumor
1.2
411
Tumor
1.1
227
Tumor
1.0
1013
Tumor
0.9
1043
Tumor
0.9
365
Tumor
0.9
571
Tumor
0.8
615
Tumor
0.8
443
Tumor
0.8
465
Tumor
0.8
431
Tumor
0.7
353
Tumor
0.7
741
Tumor
0.7
697
Tumor
0.7
231
Tumor
0.7
861
Tumor
0.7
477
Tumor
0.7
313
Tumor
0.6
823
Tumor
0.6
977
Tumor
0.6
513
Tumor
0.6
567
Tumor
0.6
537
Tumor
0.6
911
Tumor
0.6
285
Tumor
0.5
785
Tumor
0.5
147
Tumor
0.5
271
Tumor
0.5
435
Tumor
0.5
745
Tumor
0.5
967
Tumor
0.5
123
Tumor
0.5
663
Tumor
0.5
361
Tumor
0.5
461
Tumor
0.5
777
Tumor
0.5
1031
Tumor
0.5
451
Tumor
0.5
755
Tumor
0.5
483
Tumor
0.4
1025
Tumor
0.4
515
Tumor
0.4
112
Tumor
0.4
145
Tumor
0.4
641
Tumor
0.4
267
Tumor
0.4
867
Tumor
0.4
277
Tumor
0.4
221
Tumor
0.4
393
Tumor
0.4
923
Tumor
0.4
391
Tumor
0.4
743
Tumor
0.4
423
Tumor
0.4
1041
Tumor
0.3
257
Tumor
0.3
851
Tumor
0.3
815
Tumor
0.3
1027
Tumor
0.3
135
Tumor
0.3
1045
Tumor
0.3
913
Tumor
0.3
383
Tumor
0.3
137
Tumor
0.3
883
Tumor
0.2
953
Tumor
0.2
921
Tumor
0.2
433
Tumor
0.2
367
Tumor
0.2
873
Tumor
0.2
436
Normal
0.2
1015
Tumor
0.2
737
Tumor
0.2
951
Tumor
0.2
357
Tumor
0.2
127
Tumor
0.2
665
Tumor
0.2
1021
Tumor
0.2
125
Tumor
0.2
975
Tumor
0.2
685
Tumor
0.2
387
Tumor
0.2
363
Tumor
0.2
185
Tumor
0.1
525
Tumor
0.1
957
Tumor
0.1
124
Normal
0.1
463
Tumor
0.1
327
Tumor
0.1
131
Tumor
0.1
523
Tumor
0.1
445
Tumor
0.1
557
Tumor
0.1
915
Tumor
0.1
981
Tumor
0.1
455
Tumor
0.1
487
Tumor
0.1
258
Normal
0.1
427
Tumor
0.1
956
Normal
0.1
527
Tumor
0.1
865
Tumor
0.1
161
Tumor
0.1
963
Tumor
0.1
473
Tumor
0.1
314
Normal
0.1
344
Normal
0.1
328
Normal
0.1
635
Tumor
0.1
471
Tumor
0.0
332
Normal
0.0
955
Tumor
0.0
355
Tumor
0.0
746
Normal
0.0
222
Normal
0.0
497
Tumor
0.0
171
Tumor
0.0
517
Tumor
0.0
278
Normal
0.0
563
Tumor
0.0
983
Tumor
0.0
186
Normal
0.0
114
Normal
0.0
713
Tumor
0.0
534
Normal
0.0
223
Tumor
0.0
172
Normal
0.0
446
Normal
0.0
297
Tumor
0.0
553
Tumor
0.0
573
Tumor
0.0
965
Tumor
0.0
474
Normal
0.0
874
Normal
0.0
514
Normal
0.0
862
Normal
0.0
141
Tumor
0.0
722
Normal
0.0
482
Normal
0.0
881
Tumor
0.0
466
Normal
0.0
564
Normal
0.0
518
Normal
0.0
392
Normal
-0.1
727
Tumor
-0.1
113
Tumor
-0.1
944
Normal
-0.1
524
Normal
-0.1
331
Tumor
-0.1
394
Normal
-0.1
574
Normal
-0.1
136
Normal
-0.1
232
Normal
-0.1
925
Tumor
-0.1
187
Tumor
-0.1
724
Normal
-0.1
618
Normal
-0.1
824
Normal
-0.1
388
Normal
-0.1
472
Normal
-0.1
188
Normal
-0.1
162
Normal
-0.1
535
Tumor
-0.1
857
Tumor
-0.1
272
Normal
-0.1
126
Normal
-0.1
616
Normal
-0.1
952
Normal
-0.1
863
Tumor
-0.1
884
Normal
-0.1
262
Normal
-0.1
462
Normal
-0.1
128
Normal
-0.1
937
Tumor
-0.1
864
Normal
-0.1
148
Normal
-0.1
558
Normal
-0.1
214
Normal
-0.1
132
Normal
-0.2
312
Normal
-0.2
444
Normal
-0.2
642
Normal
-0.2
813
Tumor
-0.2
428
Normal
-0.2
628
Normal
-0.2
954
Normal
-0.2
358
Normal
-0.2
414
Normal
-0.2
922
Normal
-0.2
196
Normal
-0.2
481
Tumor
-0.2
464
Normal
-0.2
298
Normal
-0.2
968
Normal
-0.2
568
Normal
-0.2
268
Normal
-0.2
395
Tumor
-0.2
882
Normal
-0.2
191
Tumor
-0.2
924
Normal
-0.2
412
Normal
-0.2
342
Normal
-0.2
1042
Normal
-0.2
138
Normal
-0.2
362
Normal
-0.2
636
Normal
-0.2
868
Normal
-0.2
468
Normal
-0.2
425
Tumor
-0.2
484
Normal
-0.2
351
Tumor
-0.2
142
Normal
-0.2
452
Normal
-0.2
364
Normal
-0.2
492
Normal
-0.2
982
Normal
-0.2
858
Normal
-0.2
976
Normal
-0.2
218
Normal
-0.2
385
Tumor
-0.2
434
Normal
-0.2
415
Tumor
-0.2
546
Normal
-0.2
111
Normal
-0.2
617
Tumor
-0.2
356
Normal
-0.2
1028
Normal
-0.2
914
Normal
-0.2
533
Tumor
-0.2
416
Normal
-0.2
448
Normal
-0.2
526
Normal
-0.2
721
Tumor
-0.2
217
Tumor
-0.3
146
Normal
-0.3
498
Normal
-0.3
516
Normal
-0.3
966
Normal
-0.3
426
Normal
-0.3
261
Tumor
-0.3
715
Tumor
-0.3
424
Normal
-0.3
686
Normal
-0.3
538
Normal
-0.3
647
Tumor
-0.3
926
Normal
-0.3
938
Normal
-0.3
698
Normal
-0.3
283
Tumor
-0.3
432
Normal
-0.3
456
Normal
-0.3
1032
Normal
-0.3
696
Normal
-0.3
554
Normal
-0.3
648
Normal
-0.3
661
Tumor
-0.3
1016
Normal
-0.3
341
Tumor
-0.3
918
Normal
-0.3
666
Normal
-0.3
494
Normal
-0.3
756
Normal
-0.3
786
Normal
-0.3
877
Tumor
-0.3
354
Normal
-0.3
572
Normal
-0.3
866
Normal
-0.3
386
Normal
-0.3
662
Normal
-0.3
528
Normal
-0.3
964
Normal
-0.3
912
Normal
-0.3
943
Tumor
-0.3
213
Tumor
-0.3
714
Normal
-0.3
493
Tumor
-0.4
422
Normal
-0.4
195
Tumor
-0.4
488
Normal
-0.4
958
Normal
-0.4
366
Normal
-0.4
1022
Normal
-0.4
728
Normal
-0.4
376
Normal
-0.4
738
Normal
-0.4
672
Normal
-0.4
384
Normal
-0.4
716
Normal
-0.4
478
Normal
-0.4
723
Tumor
-0.4
695
Tumor
-0.4
1026
Normal
-0.4
421
Tumor
-0.4
1046
Normal
-0.4
814
Normal
-0.4
396
Normal
-0.4
778
Normal
-0.4
984
Normal
-0.4
368
Normal
-0.4
352
Normal
-0.4
284
Normal
-0.4
742
Normal
-0.4
1014
Normal
-0.4
192
Normal
-0.4
664
Normal
-0.4
852
Normal
-0.5
916
Normal
-0.5
228
Normal
-0.5
978
Normal
-0.5
744
Normal
-0.5
413
Tumor
-0.5
671
Tumor
-0.5
816
Normal
-0.5
1044
Normal
-0.5
447
Tumor
-0.5
224
Normal
-0.5
467
Tumor
-0.5
536
Normal
-0.5
818
Normal
-0.6
211
Tumor
-0.6
343
Tumor
-0.6
545
Tumor
-0.6
311
Tumor
-0.6
286
Normal
-0.6
212
Normal
-0.7
375
Tumor
-0.7
817
Tumor
-0.7
878
Normal
-0.7
917
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
