HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:97.3 nTPM
HPA Brain:72.4 nTPM
GTEx:97.3 nTPM
FANTOM5:100.8 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:35.1 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035376Antibody HPA035377
Glial cells LowLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 72.4
Sample id Sample description nTPM
Hippocampus
nTPM: 69.1
1898 Male, age 80, left hemisphere 84.2
2529 Female, age 94, left hemisphere 69.9
2621 Female, age 67, right hemisphere 69.6
1855 Male, age 76, left hemisphere 68.0
1911 Female, age 85, right hemisphere 65.9
2148 Female, age 91, left hemisphere 56.9
Dentate gyrus
nTPM: 67.3
2530 Female, age 94, left hemisphere 90.8
2528 Male, age 74, both hemispheres 72.8
2010 Male, age 76, both hemispheres 71.9
1927 Female, age 91, both hemispheres 63.1
2246 Female, age 85, both hemispheres 60.1
2531 Female, age 67, both hemispheres 45.2
Entorhinal gyrus
nTPM: 65.5
2764 Male, age 80, right hemisphere 74.2
2117 Female, age 91, right hemisphere 74.1
1938 Female, age 85, left hemisphere 73.1
1787 Male, age 76, left hemisphere 62.7
2613 Female, age 94, left hemisphere 59.0
2686 Male, age 75, right hemisphere 50.0
Hippocampus, CA1
nTPM: 69.1
2749 Male, age 80, left hemisphere 92.6
2527 Male, age 74, both hemispheres 69.6
1873 Female, age 85, both hemispheres 62.5
2082 Female, age 91, right hemisphere 62.4
2045 Male, age 76, both hemispheres 58.5
Hippocampus, CA2
nTPM: 72.4
1963 Male, age 80, left hemisphere 87.3
2249 Male, age 74, both hemispheres 81.6
2437 Female, age 94, left hemisphere 71.6
1892 Male, age 76, both hemispheres 71.2
2113 Female, age 91, right hemisphere 61.7
1940 Female, age 85, left hemisphere 61.1
Hippocampus, CA3
nTPM: 65.1
2436 Male, age 74, both hemispheres 79.9
2137 Male, age 80, left hemisphere 74.2
1891 Female, age 85, both hemispheres 65.4
1867 Male, age 76, both hemispheres 64.8
2620 Female, age 94, left hemisphere 55.8
2861 Female, age 67, both hemispheres 50.3
Parahippocampal cortex
nTPM: 60.0
1850 Male, age 80, both hemispheres 71.7
2532 Female, age 72, left hemisphere 66.0
1990 Female, age 91, right hemisphere 64.5
1933 Female, age 85, both hemispheres 63.2
2250 Female, age 67, right hemisphere 61.9
2018 Male, age 76, both hemispheres 61.8
2245 Female, age 91, both hemispheres 61.3
2692 Male, age 74, both hemispheres 57.8
2622 Female, age 67, right hemisphere 46.3
2693 Female, age 94, both hemispheres 46.1
Perirhinal gyrus
nTPM: 66.4
1847 Female, age 91, left hemisphere 76.3
1794 Male, age 80, right hemisphere 72.9
1841 Female, age 85, right hemisphere 65.9
2521 Female, age 94, right hemisphere 65.6
2848 Male, age 76, right hemisphere 51.4
Subiculum
nTPM: 65.6
1901 Male, age 80, both hemispheres 77.0
1977 Female, age 85, both hemispheres 73.3
2042 Male, age 76, both hemispheres 64.5
2619 Male, age 74, both hemispheres 63.8
2729 Female, age 91, right hemisphere 59.4
2438 Female, age 94, left hemisphere 55.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 97.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 97.3
Samples: 197

Max nTPM: 200.6
Min nTPM: 34.4
Std nTPM: 25.9
Median nTPM: 94.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 200.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 187.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 185.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 178.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 151.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 151.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 147.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 144.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 143.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 142.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 138.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 100.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 100.8
FF:10169-103B7 60 years, female 127.7
FF:10153-102I9 76 years, female 73.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 17.2
Pig sample Sample description nTPM
Subiculum
nTPM: 14.1
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.0
Sample A Female 17.3
Sample B Female 14.5
Sample C Male 12.0
Sample D Male 12.4
Dorsal hippocampus
nTPM: 17.2
Samples: 4

Max nTPM: 22.6
Min nTPM: 12.9
Sample A Female 22.6
Sample B Female 15.5
Sample C Male 17.9
Sample D Male 12.9
Entorhinal cortex
nTPM: 13.3
Samples: 4

Max nTPM: 14.8
Min nTPM: 10.8
Sample A Female 13.1
Sample B Female 14.5
Sample C Male 14.8
Sample D Male 10.8
Ventral hippocampus
nTPM: 15.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.7
Sample A Female 17.3
Sample B Female 12.7
Sample C Male 17.7
Sample D Male 15.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 35.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.1
Samples: 4

Max nTPM: 41.9
Min nTPM: 31.9
Sample A Male 32.3
Sample B Male 34.3
Sample C Female 41.9
Sample D Female 31.9
Hippocampal formation
nTPM: 33.0
Samples: 4

Max nTPM: 37.0
Min nTPM: 30.4
Sample A Male 37.0
Sample B Male 31.0
Sample C Female 30.4
Sample D Female 33.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
68545723 Antisense, RP_050120_01_D11, Mouse strain C57BL/6J (56 days, male) 1.6

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