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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2N is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
102.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
91.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
77.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
77.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
74.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
74.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
69.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
68.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
67.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
65.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
65.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
65.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
64.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
58.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
56.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
56.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
56.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
51.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
51.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
50.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
48.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
48.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
48.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
48.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
47.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
47.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
47.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
45.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
45.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
45.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
45.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
41.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
41.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
40.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
40.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
39.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
39.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
38.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
37.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
35.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
34.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
34.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
31.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2N is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
67.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
51.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
41.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
35.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
0.8
957
Tumor
0.5
785
Tumor
0.5
147
Tumor
0.5
517
Tumor
0.5
131
Tumor
0.4
921
Tumor
0.4
331
Tumor
0.4
745
Tumor
0.4
571
Tumor
0.3
815
Tumor
0.3
647
Tumor
0.3
112
Tumor
0.3
481
Tumor
0.3
727
Tumor
0.3
123
Tumor
0.3
285
Tumor
0.3
1043
Tumor
0.3
983
Tumor
0.3
411
Tumor
0.3
463
Tumor
0.3
513
Tumor
0.3
515
Tumor
0.3
127
Tumor
0.3
435
Tumor
0.3
425
Tumor
0.3
545
Tumor
0.3
1025
Tumor
0.3
227
Tumor
0.3
385
Tumor
0.3
695
Tumor
0.3
487
Tumor
0.2
363
Tumor
0.2
125
Tumor
0.2
958
Normal
0.2
1031
Tumor
0.2
917
Tumor
0.2
877
Tumor
0.2
965
Tumor
0.2
943
Tumor
0.2
741
Tumor
0.2
756
Normal
0.2
472
Normal
0.2
523
Tumor
0.2
536
Normal
0.2
721
Tumor
0.2
865
Tumor
0.2
671
Tumor
0.2
923
Tumor
0.2
483
Tumor
0.2
553
Tumor
0.2
851
Tumor
0.2
635
Tumor
0.2
351
Tumor
0.2
715
Tumor
0.2
984
Normal
0.2
473
Tumor
0.2
1044
Normal
0.2
482
Normal
0.2
126
Normal
0.2
221
Tumor
0.2
367
Tumor
0.1
746
Normal
0.1
786
Normal
0.1
465
Tumor
0.1
1046
Normal
0.1
743
Tumor
0.1
615
Tumor
0.1
685
Tumor
0.1
497
Tumor
0.1
616
Normal
0.1
627
Tumor
0.1
391
Tumor
0.1
433
Tumor
0.1
192
Normal
0.1
723
Tumor
0.1
1022
Normal
0.1
1014
Normal
0.1
824
Normal
0.1
535
Tumor
0.1
628
Normal
0.1
978
Normal
0.1
462
Normal
0.1
713
Tumor
0.1
698
Normal
0.1
498
Normal
0.1
714
Normal
0.1
661
Tumor
0.1
171
Tumor
0.1
642
Normal
0.1
663
Tumor
0.1
128
Normal
0.1
924
Normal
0.1
716
Normal
0.1
1032
Normal
0.1
912
Normal
0.1
448
Normal
0.1
952
Normal
0.1
982
Normal
0.1
967
Tumor
0.1
977
Tumor
0.1
478
Normal
0.1
528
Normal
0.1
431
Tumor
0.1
356
Normal
0.1
516
Normal
0.1
916
Normal
0.1
484
Normal
0.1
261
Tumor
0.1
327
Tumor
0.1
386
Normal
0.1
964
Normal
0.1
328
Normal
0.1
881
Tumor
0.1
915
Tumor
0.1
955
Tumor
0.1
1016
Normal
0.1
488
Normal
0.1
392
Normal
0.1
778
Normal
0.1
268
Normal
0.1
364
Normal
0.1
477
Tumor
0.1
1042
Normal
0.1
272
Normal
0.1
212
Normal
0.1
257
Tumor
0.1
111
Normal
0.1
567
Tumor
0.1
394
Normal
0.1
444
Normal
0.1
966
Normal
0.1
286
Normal
0.1
648
Normal
0.1
818
Normal
0.1
686
Normal
0.1
412
Normal
0.1
271
Tumor
0.1
148
Normal
0.1
471
Tumor
0.1
636
Normal
0.0
884
Normal
0.0
524
Normal
0.0
1045
Tumor
0.0
618
Normal
0.0
742
Normal
0.0
666
Normal
0.0
1026
Normal
0.0
447
Tumor
0.0
728
Normal
0.0
421
Tumor
0.0
858
Normal
0.0
312
Normal
0.0
617
Tumor
0.0
416
Normal
0.0
514
Normal
0.0
546
Normal
0.0
424
Normal
0.0
518
Normal
0.0
852
Normal
0.0
387
Tumor
0.0
284
Normal
0.0
298
Normal
0.0
975
Tumor
0.0
944
Normal
0.0
393
Tumor
0.0
664
Normal
0.0
185
Tumor
0.0
816
Normal
0.0
873
Tumor
0.0
262
Normal
0.0
224
Normal
0.0
867
Tumor
0.0
862
Normal
0.0
428
Normal
0.0
922
Normal
0.0
558
Normal
0.0
464
Normal
0.0
882
Normal
0.0
662
Normal
0.0
641
Tumor
0.0
188
Normal
0.0
217
Tumor
0.0
422
Normal
0.0
228
Normal
0.0
354
Normal
0.0
918
Normal
0.0
755
Tumor
0.0
396
Normal
0.0
817
Tumor
0.0
277
Tumor
0.0
196
Normal
0.0
696
Normal
0.0
738
Normal
0.0
162
Normal
0.0
926
Normal
0.0
474
Normal
0.0
563
Tumor
0.0
352
Normal
0.0
141
Tumor
0.0
557
Tumor
0.0
231
Tumor
0.0
737
Tumor
0.0
968
Normal
0.0
494
Normal
0.0
455
Tumor
0.0
414
Normal
0.0
232
Normal
0.0
186
Normal
0.0
436
Normal
0.0
868
Normal
0.0
283
Tumor
0.0
415
Tumor
0.0
914
Normal
0.0
976
Normal
0.0
572
Normal
0.0
878
Normal
0.0
911
Tumor
0.0
573
Tumor
0.0
1015
Tumor
0.0
492
Normal
0.0
564
Normal
0.0
432
Normal
0.0
355
Tumor
0.0
574
Normal
0.0
258
Normal
0.0
443
Tumor
0.0
938
Normal
0.0
568
Normal
0.0
451
Tumor
0.0
434
Normal
0.0
146
Normal
0.0
267
Tumor
0.0
365
Tumor
0.0
145
Tumor
0.0
866
Normal
0.0
1041
Tumor
0.0
861
Tumor
0.0
526
Normal
0.0
534
Normal
0.0
341
Tumor
-0.1
722
Normal
-0.1
468
Normal
-0.1
136
Normal
-0.1
195
Tumor
-0.1
213
Tumor
-0.1
537
Tumor
-0.1
493
Tumor
-0.1
332
Normal
-0.1
358
Normal
-0.1
864
Normal
-0.1
132
Normal
-0.1
114
Normal
-0.1
388
Normal
-0.1
138
Normal
-0.1
214
Normal
-0.1
981
Tumor
-0.1
538
Normal
-0.1
137
Tumor
-0.1
135
Tumor
-0.1
161
Tumor
-0.1
376
Normal
-0.1
361
Tumor
-0.1
672
Normal
-0.1
456
Normal
-0.1
426
Normal
-0.1
314
Normal
-0.1
342
Normal
-0.1
874
Normal
-0.1
124
Normal
-0.1
1028
Normal
-0.1
222
Normal
-0.1
925
Tumor
-0.1
362
Normal
-0.1
172
Normal
-0.1
956
Normal
-0.1
954
Normal
-0.1
142
Normal
-0.1
466
Normal
-0.1
311
Tumor
-0.1
344
Normal
-0.1
446
Normal
-0.1
278
Normal
-0.1
383
Tumor
-0.1
744
Normal
-0.1
951
Tumor
-0.1
445
Tumor
-0.1
218
Normal
-0.1
313
Tumor
-0.1
857
Tumor
-0.1
353
Tumor
-0.1
823
Tumor
-0.1
461
Tumor
-0.1
384
Normal
-0.1
1021
Tumor
-0.1
366
Normal
-0.1
724
Normal
-0.1
953
Tumor
-0.1
913
Tumor
-0.1
423
Tumor
-0.1
211
Tumor
-0.2
297
Tumor
-0.2
554
Normal
-0.2
665
Tumor
-0.2
191
Tumor
-0.2
937
Tumor
-0.2
814
Normal
-0.2
467
Tumor
-0.2
113
Tumor
-0.2
413
Tumor
-0.2
697
Tumor
-0.2
452
Normal
-0.2
368
Normal
-0.2
375
Tumor
-0.2
491
Tumor
-0.2
883
Tumor
-0.2
777
Tumor
-0.2
343
Tumor
-0.3
187
Tumor
-0.3
395
Tumor
-0.3
1027
Tumor
-0.3
427
Tumor
-0.3
525
Tumor
-0.3
813
Tumor
-0.3
223
Tumor
-0.3
963
Tumor
-0.3
533
Tumor
-0.3
357
Tumor
-0.3
527
Tumor
-0.4
863
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
