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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRB2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
1.8e-7
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
30%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
55%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
114.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
110.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
106.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
105.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
97.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
94.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
90.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
86.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
86.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
84.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
84.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
79.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
79.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
73.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
73.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
73.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
72.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
71.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
71.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
70.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
69.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
69.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
68.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
67.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
66.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
66.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
65.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
64.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
64.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
63.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
63.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
62.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
60.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
60.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
60.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
59.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
59.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
59.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
59.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
58.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
58.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
58.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
57.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
57.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
57.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
57.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
57.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
56.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
55.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
55.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
55.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
55.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
55.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
55.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
55.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
54.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
54.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
54.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
53.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
53.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
53.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
53.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
52.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
52.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
51.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
51.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
51.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
51.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
51.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
51.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
50.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
50.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
50.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
50.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
50.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
50.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
49.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
49.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
49.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
49.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
49.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
49.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
49.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
48.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
48.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
48.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
47.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
47.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
47.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
45.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
45.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
45.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
45.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
45.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
44.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
44.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
43.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
43.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
43.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
42.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
42.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
42.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
42.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
42.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
42.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
42.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
39.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
39.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
39.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
38.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
38.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
38.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
37.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
37.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
37.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
36.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
36.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
36.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
35.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
32.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
32.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
32.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
30.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRB2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.00028
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
41%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
70%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.1
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
132.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
110.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
107.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
101.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
91.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
88.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
88.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
84.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
80.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
78.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
73.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
69.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
68.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
66.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
65.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
64.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
63.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
62.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
62.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
61.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
60.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
58.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
58.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
57.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
57.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
56.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
55.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
53.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
52.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
51.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
50.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
50.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
49.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
49.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
48.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
47.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
46.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
46.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
46.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
46.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
45.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
45.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
44.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
43.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
43.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
43.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
43.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
42.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
42.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
41.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
41.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
40.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
40.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
39.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
37.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
34.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
32.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
27.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.5
661
Tumor
1.0
211
Tumor
1.0
965
Tumor
1.0
537
Tumor
0.9
125
Tumor
0.8
573
Tumor
0.8
724
Normal
0.8
917
Tumor
0.7
981
Tumor
0.7
375
Tumor
0.7
355
Tumor
0.7
957
Tumor
0.7
525
Tumor
0.6
283
Tumor
0.6
285
Tumor
0.5
311
Tumor
0.5
741
Tumor
0.5
435
Tumor
0.5
492
Normal
0.5
213
Tumor
0.5
953
Tumor
0.5
861
Tumor
0.5
257
Tumor
0.5
983
Tumor
0.5
524
Normal
0.5
423
Tumor
0.5
536
Normal
0.5
367
Tumor
0.4
271
Tumor
0.4
343
Tumor
0.4
966
Normal
0.4
1021
Tumor
0.4
1013
Tumor
0.4
535
Tumor
0.4
434
Normal
0.4
478
Normal
0.4
545
Tumor
0.4
925
Tumor
0.3
341
Tumor
0.3
553
Tumor
0.3
538
Normal
0.3
695
Tumor
0.3
1027
Tumor
0.3
865
Tumor
0.3
713
Tumor
0.3
455
Tumor
0.3
1031
Tumor
0.3
978
Normal
0.3
385
Tumor
0.3
923
Tumor
0.3
123
Tumor
0.2
217
Tumor
0.2
951
Tumor
0.2
491
Tumor
0.2
883
Tumor
0.2
817
Tumor
0.2
477
Tumor
0.2
493
Tumor
0.2
147
Tumor
0.2
262
Normal
0.2
498
Normal
0.2
447
Tumor
0.2
487
Tumor
0.2
977
Tumor
0.2
1015
Tumor
0.2
131
Tumor
0.2
567
Tumor
0.2
745
Tumor
0.2
141
Tumor
0.2
937
Tumor
0.2
916
Normal
0.2
471
Tumor
0.2
137
Tumor
0.2
224
Normal
0.2
411
Tumor
0.2
975
Tumor
0.2
851
Tumor
0.2
867
Tumor
0.2
721
Tumor
0.2
921
Tumor
0.2
192
Normal
0.2
963
Tumor
0.2
697
Tumor
0.2
663
Tumor
0.2
185
Tumor
0.2
277
Tumor
0.1
483
Tumor
0.1
967
Tumor
0.1
527
Tumor
0.1
1043
Tumor
0.1
467
Tumor
0.1
212
Normal
0.1
391
Tumor
0.1
463
Tumor
0.1
814
Normal
0.1
516
Normal
0.1
188
Normal
0.1
956
Normal
0.1
221
Tumor
0.1
554
Normal
0.1
686
Normal
0.1
433
Tumor
0.1
383
Tumor
0.1
737
Tumor
0.1
284
Normal
0.1
823
Tumor
0.1
1044
Normal
0.1
815
Tumor
0.1
523
Tumor
0.1
218
Normal
0.1
955
Tumor
0.1
722
Normal
0.1
857
Tumor
0.1
563
Tumor
0.1
952
Normal
0.0
913
Tumor
0.0
852
Normal
0.0
863
Tumor
0.0
126
Normal
0.0
444
Normal
0.0
943
Tumor
0.0
716
Normal
0.0
461
Tumor
0.0
1046
Normal
0.0
647
Tumor
0.0
696
Normal
0.0
728
Normal
0.0
363
Tumor
0.0
272
Normal
0.0
124
Normal
0.0
984
Normal
0.0
918
Normal
0.0
926
Normal
0.0
187
Tumor
0.0
515
Tumor
0.0
146
Normal
0.0
395
Tumor
0.0
778
Normal
0.0
415
Tumor
0.0
387
Tumor
0.0
1016
Normal
0.0
297
Tumor
0.0
473
Tumor
0.0
195
Tumor
0.0
1028
Normal
0.0
954
Normal
0.0
1045
Tumor
0.0
513
Tumor
0.0
514
Normal
0.0
558
Normal
0.0
332
Normal
0.0
1014
Normal
0.0
738
Normal
0.0
1042
Normal
0.0
494
Normal
0.0
958
Normal
0.0
528
Normal
0.0
142
Normal
0.0
351
Tumor
0.0
443
Tumor
0.0
727
Tumor
0.0
138
Normal
0.0
938
Normal
0.0
968
Normal
0.0
571
Tumor
-0.1
362
Normal
-0.1
331
Tumor
-0.1
976
Normal
-0.1
412
Normal
-0.1
816
Normal
-0.1
488
Normal
-0.1
922
Normal
-0.1
714
Normal
-0.1
518
Normal
-0.1
223
Tumor
-0.1
312
Normal
-0.1
641
Tumor
-0.1
526
Normal
-0.1
874
Normal
-0.1
1026
Normal
-0.1
268
Normal
-0.1
112
Tumor
-0.1
465
Tumor
-0.1
873
Tumor
-0.1
881
Tumor
-0.1
915
Tumor
-0.1
474
Normal
-0.1
858
Normal
-0.1
191
Tumor
-0.1
497
Tumor
-0.1
361
Tumor
-0.1
416
Normal
-0.1
384
Normal
-0.1
231
Tumor
-0.1
1025
Tumor
-0.1
546
Normal
-0.1
472
Normal
-0.1
136
Normal
-0.1
628
Normal
-0.1
517
Tumor
-0.1
451
Tumor
-0.1
448
Normal
-0.1
114
Normal
-0.1
671
Tumor
-0.1
723
Tumor
-0.1
982
Normal
-0.1
484
Normal
-0.1
672
Normal
-0.1
261
Tumor
-0.1
365
Tumor
-0.1
914
Normal
-0.1
813
Tumor
-0.1
534
Normal
-0.1
227
Tumor
-0.1
286
Normal
-0.1
944
Normal
-0.1
127
Tumor
-0.1
924
Normal
-0.1
214
Normal
-0.1
228
Normal
-0.2
756
Normal
-0.2
557
Tumor
-0.2
421
Tumor
-0.2
698
Normal
-0.2
111
Normal
-0.2
662
Normal
-0.2
113
Tumor
-0.2
386
Normal
-0.2
715
Tumor
-0.2
777
Tumor
-0.2
468
Normal
-0.2
818
Normal
-0.2
356
Normal
-0.2
742
Normal
-0.2
431
Tumor
-0.2
964
Normal
-0.2
298
Normal
-0.2
866
Normal
-0.2
232
Normal
-0.2
481
Tumor
-0.2
357
Tumor
-0.2
427
Tumor
-0.2
462
Normal
-0.2
824
Normal
-0.2
364
Normal
-0.2
755
Tumor
-0.2
313
Tumor
-0.2
353
Tumor
-0.2
396
Normal
-0.2
327
Tumor
-0.2
864
Normal
-0.2
413
Tumor
-0.2
744
Normal
-0.2
432
Normal
-0.2
786
Normal
-0.2
135
Tumor
-0.2
1041
Tumor
-0.2
258
Normal
-0.2
425
Tumor
-0.2
314
Normal
-0.2
394
Normal
-0.2
445
Tumor
-0.2
278
Normal
-0.2
196
Normal
-0.3
422
Normal
-0.3
392
Normal
-0.3
148
Normal
-0.3
862
Normal
-0.3
664
Normal
-0.3
574
Normal
-0.3
572
Normal
-0.3
482
Normal
-0.3
393
Tumor
-0.3
161
Tumor
-0.3
877
Tumor
-0.3
368
Normal
-0.3
446
Normal
-0.3
878
Normal
-0.3
328
Normal
-0.3
344
Normal
-0.3
617
Tumor
-0.3
911
Tumor
-0.3
1032
Normal
-0.3
665
Tumor
-0.3
635
Tumor
-0.3
172
Normal
-0.3
868
Normal
-0.3
222
Normal
-0.3
882
Normal
-0.3
428
Normal
-0.3
884
Normal
-0.3
456
Normal
-0.3
627
Tumor
-0.3
376
Normal
-0.3
424
Normal
-0.3
145
Tumor
-0.3
685
Tumor
-0.3
746
Normal
-0.3
128
Normal
-0.3
366
Normal
-0.3
1022
Normal
-0.3
466
Normal
-0.3
616
Normal
-0.3
666
Normal
-0.3
568
Normal
-0.3
267
Tumor
-0.3
171
Tumor
-0.3
564
Normal
-0.4
785
Tumor
-0.4
436
Normal
-0.4
352
Normal
-0.4
464
Normal
-0.4
354
Normal
-0.4
618
Normal
-0.4
912
Normal
-0.4
132
Normal
-0.4
186
Normal
-0.4
388
Normal
-0.4
162
Normal
-0.4
615
Tumor
-0.4
342
Normal
-0.4
636
Normal
-0.4
426
Normal
-0.4
414
Normal
-0.5
743
Tumor
-0.5
452
Normal
-0.5
358
Normal
-0.5
648
Normal
-0.5
642
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.