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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACAD9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACAD9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
51.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.6
627
Tumor
1.2
557
Tumor
0.9
851
Tumor
0.9
513
Tumor
0.8
937
Tumor
0.8
911
Tumor
0.8
411
Tumor
0.7
127
Tumor
0.7
715
Tumor
0.7
491
Tumor
0.7
615
Tumor
0.7
915
Tumor
0.7
267
Tumor
0.6
473
Tumor
0.6
465
Tumor
0.6
685
Tumor
0.5
537
Tumor
0.5
745
Tumor
0.5
483
Tumor
0.5
865
Tumor
0.5
171
Tumor
0.5
1043
Tumor
0.5
423
Tumor
0.4
493
Tumor
0.4
435
Tumor
0.4
128
Normal
0.4
873
Tumor
0.4
862
Normal
0.4
517
Tumor
0.4
912
Normal
0.4
981
Tumor
0.4
448
Normal
0.4
221
Tumor
0.4
344
Normal
0.4
951
Tumor
0.3
356
Normal
0.3
953
Tumor
0.3
231
Tumor
0.3
436
Normal
0.3
426
Normal
0.3
452
Normal
0.3
446
Normal
0.3
746
Normal
0.3
341
Tumor
0.3
1025
Tumor
0.3
663
Tumor
0.3
713
Tumor
0.3
451
Tumor
0.3
982
Normal
0.3
342
Normal
0.3
1045
Tumor
0.3
818
Normal
0.3
925
Tumor
0.3
222
Normal
0.3
924
Normal
0.3
964
Normal
0.3
1046
Normal
0.3
148
Normal
0.2
477
Tumor
0.2
546
Normal
0.2
922
Normal
0.2
1026
Normal
0.2
172
Normal
0.2
186
Normal
0.2
861
Tumor
0.2
857
Tumor
0.2
852
Normal
0.2
723
Tumor
0.2
525
Tumor
0.2
963
Tumor
0.2
665
Tumor
0.2
913
Tumor
0.2
944
Normal
0.2
563
Tumor
0.2
882
Normal
0.2
984
Normal
0.2
628
Normal
0.2
528
Normal
0.2
716
Normal
0.2
538
Normal
0.2
786
Normal
0.2
824
Normal
0.2
365
Tumor
0.2
1022
Normal
0.2
227
Tumor
0.2
874
Normal
0.2
926
Normal
0.2
162
Normal
0.2
696
Normal
0.2
878
Normal
0.2
564
Normal
0.2
641
Tumor
0.2
1014
Normal
0.2
445
Tumor
0.2
914
Normal
0.2
354
Normal
0.2
214
Normal
0.2
785
Tumor
0.2
724
Normal
0.2
864
Normal
0.1
534
Normal
0.1
756
Normal
0.1
518
Normal
0.1
468
Normal
0.1
1015
Tumor
0.1
277
Tumor
0.1
187
Tumor
0.1
918
Normal
0.1
141
Tumor
0.1
443
Tumor
0.1
954
Normal
0.1
714
Normal
0.1
113
Tumor
0.1
616
Normal
0.1
823
Tumor
0.1
778
Normal
0.1
272
Normal
0.1
161
Tumor
0.1
884
Normal
0.1
258
Normal
0.1
427
Tumor
0.1
462
Normal
0.1
261
Tumor
0.1
858
Normal
0.1
361
Tumor
0.1
648
Normal
0.1
965
Tumor
0.1
352
Normal
0.1
433
Tumor
0.1
474
Normal
0.1
298
Normal
0.1
135
Tumor
0.1
568
Normal
0.1
188
Normal
0.1
978
Normal
0.1
883
Tumor
0.1
721
Tumor
0.1
618
Normal
0.1
636
Normal
0.1
484
Normal
0.1
516
Normal
0.1
328
Normal
0.1
388
Normal
0.1
434
Normal
0.1
571
Tumor
0.1
957
Tumor
0.1
271
Tumor
0.1
362
Normal
0.1
414
Normal
0.1
1032
Normal
0.1
567
Tumor
0.1
461
Tumor
0.1
916
Normal
0.1
428
Normal
0.1
425
Tumor
0.1
666
Normal
0.1
742
Normal
0.0
357
Tumor
0.0
472
Normal
0.0
464
Normal
0.0
314
Normal
0.0
364
Normal
0.0
393
Tumor
0.0
424
Normal
0.0
114
Normal
0.0
1042
Normal
0.0
196
Normal
0.0
494
Normal
0.0
938
Normal
0.0
695
Tumor
0.0
672
Normal
0.0
487
Tumor
0.0
278
Normal
0.0
1027
Tumor
0.0
1044
Normal
0.0
268
Normal
0.0
526
Normal
0.0
412
Normal
0.0
744
Normal
0.0
132
Normal
0.0
125
Tumor
0.0
467
Tumor
0.0
722
Normal
0.0
112
Tumor
0.0
358
Normal
0.0
218
Normal
0.0
558
Normal
0.0
482
Normal
0.0
185
Tumor
0.0
867
Tumor
0.0
327
Tumor
0.0
956
Normal
0.0
146
Normal
0.0
868
Normal
0.0
497
Tumor
0.0
515
Tumor
0.0
257
Tumor
0.0
923
Tumor
0.0
686
Normal
0.0
481
Tumor
0.0
366
Normal
-0.1
664
Normal
-0.1
312
Normal
-0.1
416
Normal
-0.1
952
Normal
-0.1
285
Tumor
-0.1
777
Tumor
-0.1
376
Normal
-0.1
142
Normal
-0.1
958
Normal
-0.1
413
Tumor
-0.1
395
Tumor
-0.1
727
Tumor
-0.1
466
Normal
-0.1
228
Normal
-0.1
444
Normal
-0.1
492
Normal
-0.1
737
Tumor
-0.1
396
Normal
-0.1
983
Tumor
-0.1
955
Tumor
-0.1
136
Normal
-0.1
966
Normal
-0.1
456
Normal
-0.1
514
Normal
-0.1
1028
Normal
-0.1
574
Normal
-0.1
394
Normal
-0.1
488
Normal
-0.1
662
Normal
-0.1
976
Normal
-0.1
1031
Tumor
-0.1
545
Tumor
-0.1
386
Normal
-0.1
743
Tumor
-0.1
738
Normal
-0.1
642
Normal
-0.1
286
Normal
-0.1
572
Normal
-0.1
232
Normal
-0.1
415
Tumor
-0.1
332
Normal
-0.1
498
Normal
-0.1
698
Normal
-0.1
1016
Normal
-0.1
728
Normal
-0.1
816
Normal
-0.2
217
Tumor
-0.2
1013
Tumor
-0.2
535
Tumor
-0.2
524
Normal
-0.2
111
Normal
-0.2
262
Normal
-0.2
741
Tumor
-0.2
968
Normal
-0.2
138
Normal
-0.2
478
Normal
-0.2
145
Tumor
-0.2
977
Tumor
-0.2
224
Normal
-0.2
432
Normal
-0.2
463
Tumor
-0.2
123
Tumor
-0.2
367
Tumor
-0.2
697
Tumor
-0.2
126
Normal
-0.2
137
Tumor
-0.2
392
Normal
-0.2
671
Tumor
-0.2
191
Tumor
-0.2
387
Tumor
-0.2
755
Tumor
-0.2
447
Tumor
-0.3
877
Tumor
-0.3
284
Normal
-0.3
921
Tumor
-0.3
353
Tumor
-0.3
943
Tumor
-0.3
817
Tumor
-0.3
223
Tumor
-0.3
124
Normal
-0.3
212
Normal
-0.3
368
Normal
-0.3
195
Tumor
-0.3
866
Normal
-0.3
536
Normal
-0.3
573
Tumor
-0.3
384
Normal
-0.3
313
Tumor
-0.3
363
Tumor
-0.3
647
Tumor
-0.3
383
Tumor
-0.3
375
Tumor
-0.4
147
Tumor
-0.4
355
Tumor
-0.4
297
Tumor
-0.4
385
Tumor
-0.4
967
Tumor
-0.4
213
Tumor
-0.4
617
Tumor
-0.4
471
Tumor
-0.4
975
Tumor
-0.4
351
Tumor
-0.4
431
Tumor
-0.4
815
Tumor
-0.4
131
Tumor
-0.4
813
Tumor
-0.4
554
Normal
-0.4
533
Tumor
-0.4
917
Tumor
-0.4
192
Normal
-0.5
331
Tumor
-0.5
553
Tumor
-0.5
1021
Tumor
-0.5
421
Tumor
-0.5
814
Normal
-0.5
863
Tumor
-0.5
422
Normal
-0.5
635
Tumor
-0.6
283
Tumor
-0.6
881
Tumor
-0.6
661
Tumor
-0.6
343
Tumor
-0.6
311
Tumor
-0.7
523
Tumor
-0.7
391
Tumor
-0.7
455
Tumor
-0.7
211
Tumor
-0.8
527
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.