MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.1 nTPM
HPA Brain:105.6 nTPM
GTEx:52.1 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Mouse:1102.7 nTPM
Allen mouse:22.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 105.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.6
2411 Female, age 72, unknown 74.0
2219 Male, age 76, both hemispheres 68.1
1827 Male, age 72, unknown 62.0
1870 Female, age 42, unknown 58.1
1833 Male, age 53, unknown 56.1
1830 Male, age 51, unknown 47.1
2666 Male, age 74, left hemisphere 40.0
2019 Male, age 18, unknown 38.9
2828 Female, age 72, unknown 37.7
2586 Male, age 75, left hemisphere 33.6
Dorsal raphe nucleus
nTPM: 68.3
2298 Female, age 72, unknown 86.0
2750 Male, age 76, both hemispheres 75.5
2047 Male, age 72, unknown 73.8
1828 Male, age 53, unknown 57.4
2016 Female, age 72, unknown 48.7
Inferior colliculus
nTPM: 64.1
2097 Female, age 72, unknown 70.4
2849 Male, age 72, unknown 68.9
1848 Female, age 42, unknown 62.9
1890 Male, age 53, unknown 54.3
Median raphe nucleus
nTPM: 105.6
2220 Male, age 76, midline 105.6
Periaquaductal grey, anterior
nTPM: 61.7
1947 Male, age 18, unknown 74.7
1795 Male, age 51, unknown 56.3
2502 Female, age 75, unknown 54.1
Periaquaductal grey, dorsal
nTPM: 61.5
1840 Male, age 53, unknown 74.6
2850 Male, age 76, both hemispheres 67.4
2464 Female, age 72, unknown 55.3
1831 Male, age 72, unknown 48.8
Periaquaductal grey, lateral
nTPM: 48.1
2140 Male, age 76, both hemispheres 52.5
2053 Male, age 18, unknown 46.3
2272 Male, age 74, both hemispheres 45.6
Pretectal area
nTPM: 56.6
2224 Female, age 72, unknown 79.6
1816 Male, age 51, unknown 63.1
1944 Female, age 72, unknown 63.1
2007 Male, age 72, unknown 61.1
2825 Male, age 18, unknown 58.9
1817 Female, age 42, unknown 58.7
1815 Male, age 53, unknown 56.0
2667 Female, age 75, unknown 54.9
2273 Male, age 74, both hemispheres 43.9
2316 Male, age 76, right hemisphere 42.7
2407 Male, age 75, both hemispheres 40.4
Red nucleus
nTPM: 36.8
2725 Female, age 75, unknown 54.2
1821 Female, age 72, unknown 46.0
2584 Male, age 75, left hemisphere 42.5
1954 Female, age 42, unknown 37.8
2785 Male, age 18, unknown 37.0
2588 Male, age 74, left hemisphere 35.9
2823 Male, age 76, right hemisphere 34.9
2769 Male, age 72, unknown 34.0
2227 Male, age 72, unknown 33.8
1904 Male, age 53, unknown 30.6
1865 Male, age 51, unknown 27.4
2503 Female, age 72, unknown 27.4
Substantia nigra
nTPM: 61.9
2241 Male, age 72, unknown 91.0
1916 Female, age 42, unknown 89.5
1889 Female, age 72, unknown 68.5
2409 Female, age 72, unknown 64.7
1851 Male, age 51, unknown 62.0
1941 Male, age 53, unknown 61.1
2699 Male, age 18, unknown 53.4
2665 Male, age 74, both hemispheres 51.8
2590 Female, age 75, unknown 46.0
2583 Male, age 75, right hemisphere 30.9
Superior colliculus
nTPM: 45.5
1895 Male, age 76, right hemisphere 61.7
1796 Male, age 53, unknown 58.5
1839 Male, age 51, unknown 57.0
2087 Female, age 72, unknown 51.8
2261 Male, age 18, unknown 48.7
2587 Male, age 74, left hemisphere 43.6
2668 Female, age 75, unknown 43.2
2664 Male, age 75, both hemispheres 36.7
1913 Female, age 42, unknown 29.6
1995 Male, age 72, unknown 24.6
Ventral tegmental area
nTPM: 63.3
2218 Male, age 76, both hemispheres 81.9
2410 Female, age 72, unknown 70.4
1915 Female, age 42, unknown 68.6
1942 Male, age 51, unknown 60.8
2021 Male, age 53, unknown 52.5
2223 Female, age 72, unknown 45.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 52.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.1
Samples: 139

Max nTPM: 185.6
Min nTPM: 9.5
Std nTPM: 38.1
Median nTPM: 40.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 185.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 166.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 160.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 158.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 136.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 135.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 128.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 122.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 120.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 116.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 110.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1102.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 1102.7
Samples: 4

Max nTPM: 1164.3
Min nTPM: 1003.0
Sample A Male 1003.0
Sample B Male 1164.3
Sample C Female 1122.1
Sample D Female 1121.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.4
72080123 Antisense, RP_051017_03_C06, Mouse strain C57BL/6J (56 days, male) 25.5
68924539 Antisense, RP_050303_02_E08, Mouse strain C57BL/6J (56 days, male) 19.3

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