MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA Brain:36.1 nTPM
GTEx:14.1 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:2.4 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.7
2666 Male, age 74, left hemisphere 31.7
1870 Female, age 42, unknown 22.3
2828 Female, age 72, unknown 21.8
2019 Male, age 18, unknown 20.1
1827 Male, age 72, unknown 19.9
2586 Male, age 75, left hemisphere 19.5
1830 Male, age 51, unknown 19.4
1833 Male, age 53, unknown 16.7
2411 Female, age 72, unknown 15.2
2219 Male, age 76, both hemispheres 10.7
Dorsal raphe nucleus
nTPM: 31.4
2298 Female, age 72, unknown 48.3
2016 Female, age 72, unknown 40.9
1828 Male, age 53, unknown 30.2
2047 Male, age 72, unknown 19.8
2750 Male, age 76, both hemispheres 17.5
Inferior colliculus
nTPM: 18.7
1848 Female, age 42, unknown 20.9
2849 Male, age 72, unknown 19.5
2097 Female, age 72, unknown 18.2
1890 Male, age 53, unknown 16.2
Median raphe nucleus
nTPM: 21.0
2220 Male, age 76, midline 21.0
Periaquaductal grey, anterior
nTPM: 32.7
1795 Male, age 51, unknown 44.6
1947 Male, age 18, unknown 31.9
2502 Female, age 75, unknown 21.5
Periaquaductal grey, dorsal
nTPM: 34.0
1840 Male, age 53, unknown 41.3
2850 Male, age 76, both hemispheres 37.3
1831 Male, age 72, unknown 33.6
2464 Female, age 72, unknown 23.8
Periaquaductal grey, lateral
nTPM: 36.1
2272 Male, age 74, both hemispheres 41.3
2140 Male, age 76, both hemispheres 37.6
2053 Male, age 18, unknown 29.6
Pretectal area
nTPM: 24.9
2273 Male, age 74, both hemispheres 41.7
2224 Female, age 72, unknown 36.8
2825 Male, age 18, unknown 25.1
2667 Female, age 75, unknown 25.0
1815 Male, age 53, unknown 23.9
2316 Male, age 76, right hemisphere 23.6
1817 Female, age 42, unknown 23.5
2407 Male, age 75, both hemispheres 21.0
1944 Female, age 72, unknown 20.3
2007 Male, age 72, unknown 16.9
1816 Male, age 51, unknown 15.9
Red nucleus
nTPM: 18.7
2725 Female, age 75, unknown 24.1
1904 Male, age 53, unknown 19.9
2227 Male, age 72, unknown 19.6
2769 Male, age 72, unknown 19.4
1821 Female, age 72, unknown 19.2
2584 Male, age 75, left hemisphere 19.0
1954 Female, age 42, unknown 18.7
2823 Male, age 76, right hemisphere 18.4
2785 Male, age 18, unknown 17.8
2503 Female, age 72, unknown 17.4
1865 Male, age 51, unknown 17.0
2588 Male, age 74, left hemisphere 13.4
Substantia nigra
nTPM: 20.0
2409 Female, age 72, unknown 26.1
2699 Male, age 18, unknown 24.3
2590 Female, age 75, unknown 22.9
2583 Male, age 75, right hemisphere 22.2
1851 Male, age 51, unknown 20.1
2665 Male, age 74, both hemispheres 18.2
1889 Female, age 72, unknown 18.0
2241 Male, age 72, unknown 17.6
1916 Female, age 42, unknown 16.7
1941 Male, age 53, unknown 14.1
Superior colliculus
nTPM: 24.3
1995 Male, age 72, unknown 44.3
1913 Female, age 42, unknown 30.3
1796 Male, age 53, unknown 24.4
1839 Male, age 51, unknown 22.1
2668 Female, age 75, unknown 21.8
2261 Male, age 18, unknown 21.5
2664 Male, age 75, both hemispheres 21.4
2587 Male, age 74, left hemisphere 20.1
2087 Female, age 72, unknown 19.1
1895 Male, age 76, right hemisphere 18.1
Ventral tegmental area
nTPM: 21.1
2021 Male, age 53, unknown 26.5
1942 Male, age 51, unknown 24.3
1915 Female, age 42, unknown 21.4
2223 Female, age 72, unknown 19.2
2410 Female, age 72, unknown 18.5
2218 Male, age 76, both hemispheres 16.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 46.5
Min nTPM: 3.0
Std nTPM: 8.0
Median nTPM: 12.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 46.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 44.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 37.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 36.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 33.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 32.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 31.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 30.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 30.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 29.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.3
FF:10158-103A5 76 years, female 14.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 12.4
Min nTPM: 7.6
Sample A Female 9.5
Sample B Female 12.4
Sample C Male 7.6
Sample D Male 9.0
Midbrain
nTPM: 8.5
Samples: 4

Max nTPM: 14.5
Min nTPM: 4.8
Sample A Female 14.5
Sample B Female 8.4
Sample C Male 6.1
Sample D Male 4.8
Periaqueductal gray
nTPM: 16.1
Samples: 3

Max nTPM: 25.9
Min nTPM: 10.7
Sample B Female 10.7
Sample C Male 11.7
Sample D Male 25.9
Superior colliculi
nTPM: 9.6
Samples: 4

Max nTPM: 12.2
Min nTPM: 6.5
Sample A Female 11.1
Sample B Female 12.2
Sample C Male 6.5
Sample D Male 8.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.9
Sample A Male 1.9
Sample B Male 2.1
Sample C Female 2.4
Sample D Female 3.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68203434 Antisense, RP_041018_01_A08, Mouse strain C57BL/6J (56 days, male) 1.1
67850949 Antisense, RP_041018_01_A08, Mouse strain C57BL/6J (56 days, male) 0.4

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