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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCDC71 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCDC71 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.6
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
1.6
965
Tumor
1.0
525
Tumor
1.0
917
Tumor
0.8
515
Tumor
0.8
262
Normal
0.7
857
Tumor
0.7
571
Tumor
0.7
957
Tumor
0.6
361
Tumor
0.6
195
Tumor
0.6
191
Tumor
0.6
452
Normal
0.6
535
Tumor
0.6
383
Tumor
0.6
524
Normal
0.6
943
Tumor
0.6
916
Normal
0.6
513
Tumor
0.6
865
Tumor
0.6
574
Normal
0.6
343
Tumor
0.5
951
Tumor
0.5
455
Tumor
0.5
217
Tumor
0.5
213
Tumor
0.5
924
Normal
0.5
192
Normal
0.5
823
Tumor
0.5
852
Normal
0.5
978
Normal
0.5
498
Normal
0.5
963
Tumor
0.4
921
Tumor
0.4
953
Tumor
0.4
451
Tumor
0.4
488
Normal
0.4
218
Normal
0.4
918
Normal
0.4
465
Tumor
0.4
368
Normal
0.4
268
Normal
0.4
494
Normal
0.4
816
Normal
0.4
984
Normal
0.4
874
Normal
0.4
172
Normal
0.3
162
Normal
0.3
393
Tumor
0.3
923
Tumor
0.3
818
Normal
0.3
982
Normal
0.3
514
Normal
0.3
145
Tumor
0.3
277
Tumor
0.3
661
Tumor
0.3
925
Tumor
0.3
922
Normal
0.3
341
Tumor
0.3
186
Normal
0.2
484
Normal
0.2
817
Tumor
0.2
222
Normal
0.2
1014
Normal
0.2
866
Normal
0.2
148
Normal
0.2
863
Tumor
0.2
388
Normal
0.2
724
Normal
0.2
516
Normal
0.2
312
Normal
0.2
975
Tumor
0.2
214
Normal
0.2
357
Tumor
0.2
188
Normal
0.2
376
Normal
0.2
196
Normal
0.1
744
Normal
0.1
391
Tumor
0.1
523
Tumor
0.1
385
Tumor
0.1
557
Tumor
0.1
342
Normal
0.1
958
Normal
0.1
568
Normal
0.1
314
Normal
0.1
956
Normal
0.1
258
Normal
0.1
968
Normal
0.1
938
Normal
0.1
477
Tumor
0.1
185
Tumor
0.1
272
Normal
0.1
944
Normal
0.1
572
Normal
0.1
1016
Normal
0.1
352
Normal
0.1
456
Normal
0.1
518
Normal
0.1
954
Normal
0.1
362
Normal
0.1
727
Tumor
0.1
1044
Normal
0.1
366
Normal
0.0
937
Tumor
0.0
187
Tumor
0.0
864
Normal
0.0
395
Tumor
0.0
138
Normal
0.0
365
Tumor
0.0
723
Tumor
0.0
461
Tumor
0.0
698
Normal
0.0
278
Normal
0.0
386
Normal
0.0
563
Tumor
0.0
146
Normal
0.0
354
Normal
0.0
387
Tumor
0.0
462
Normal
0.0
926
Normal
0.0
147
Tumor
0.0
141
Tumor
0.0
487
Tumor
0.0
648
Normal
0.0
868
Normal
0.0
448
Normal
0.0
526
Normal
0.0
392
Normal
0.0
468
Normal
0.0
564
Normal
0.0
481
Tumor
0.0
464
Normal
-0.1
976
Normal
-0.1
482
Normal
-0.1
558
Normal
-0.1
824
Normal
-0.1
493
Tumor
-0.1
478
Normal
-0.1
353
Tumor
-0.1
394
Normal
-0.1
466
Normal
-0.1
257
Tumor
-0.1
221
Tumor
-0.1
467
Tumor
-0.1
344
Normal
-0.1
142
Normal
-0.1
536
Normal
-0.1
728
Normal
-0.1
298
Normal
-0.1
666
Normal
-0.1
851
Tumor
-0.1
472
Normal
-0.1
384
Normal
-0.1
1046
Normal
-0.1
738
Normal
-0.1
474
Normal
-0.1
663
Tumor
-0.1
136
Normal
-0.1
351
Tumor
-0.1
297
Tumor
-0.1
1015
Tumor
-0.1
375
Tumor
-0.2
396
Normal
-0.2
171
Tumor
-0.2
862
Normal
-0.2
358
Normal
-0.2
662
Normal
-0.2
473
Tumor
-0.2
858
Normal
-0.2
332
Normal
-0.2
161
Tumor
-0.2
567
Tumor
-0.2
952
Normal
-0.2
983
Tumor
-0.2
742
Normal
-0.2
671
Tumor
-0.2
573
Tumor
-0.2
955
Tumor
-0.2
1043
Tumor
-0.2
137
Tumor
-0.3
1013
Tumor
-0.3
647
Tumor
-0.3
741
Tumor
-0.3
231
Tumor
-0.3
915
Tumor
-0.3
463
Tumor
-0.3
497
Tumor
-0.3
483
Tumor
-0.3
447
Tumor
-0.3
867
Tumor
-0.3
861
Tumor
-0.3
873
Tumor
-0.3
964
Normal
-0.3
491
Tumor
-0.3
232
Normal
-0.3
267
Tumor
-0.3
981
Tumor
-0.4
966
Normal
-0.4
1045
Tumor
-0.4
331
Tumor
-0.4
977
Tumor
-0.4
132
Normal
-0.4
737
Tumor
-0.4
664
Normal
-0.5
271
Tumor
-0.5
697
Tumor
-0.5
471
Tumor
-0.5
815
Tumor
-0.5
665
Tumor
-0.5
135
Tumor
-0.6
672
Normal
-0.6
367
Tumor
-0.6
492
Normal
-0.7
261
Tumor
-0.8
743
Tumor
-0.8
967
Tumor
-1.0
313
Tumor
-1.0
131
Tumor
-1.1
517
Tumor
-1.6
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
433
Tumor
N/A
554
Normal
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
211
Tumor
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
