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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS6KA3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
61.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
55.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
48.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
48.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
39.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS6KA3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.6
Number of samples
231
Samples
Sample
Description
TPM
DO48757
0 years, female, NA, stage:3, alive, 480 days
91.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
53.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
44.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
43.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
43.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
31.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.6
285
Tumor
1.5
463
Tumor
1.3
413
Tumor
1.3
1013
Tumor
1.3
537
Tumor
1.2
743
Tumor
1.2
221
Tumor
1.2
171
Tumor
1.1
661
Tumor
1.1
865
Tumor
1.1
367
Tumor
1.0
1021
Tumor
1.0
271
Tumor
0.9
815
Tumor
0.9
951
Tumor
0.9
983
Tumor
0.9
635
Tumor
0.8
351
Tumor
0.8
527
Tumor
0.8
473
Tumor
0.8
647
Tumor
0.8
851
Tumor
0.7
641
Tumor
0.7
313
Tumor
0.7
777
Tumor
0.7
724
Normal
0.7
363
Tumor
0.7
617
Tumor
0.7
147
Tumor
0.7
277
Tumor
0.7
545
Tumor
0.7
737
Tumor
0.6
387
Tumor
0.6
863
Tumor
0.6
817
Tumor
0.6
881
Tumor
0.6
685
Tumor
0.6
331
Tumor
0.6
943
Tumor
0.6
523
Tumor
0.5
391
Tumor
0.5
923
Tumor
0.5
231
Tumor
0.5
493
Tumor
0.5
223
Tumor
0.5
573
Tumor
0.5
553
Tumor
0.5
445
Tumor
0.4
745
Tumor
0.4
471
Tumor
0.4
447
Tumor
0.4
217
Tumor
0.4
921
Tumor
0.4
965
Tumor
0.4
125
Tumor
0.4
341
Tumor
0.4
877
Tumor
0.4
127
Tumor
0.3
567
Tumor
0.3
1027
Tumor
0.3
695
Tumor
0.3
953
Tumor
0.3
755
Tumor
0.3
557
Tumor
0.3
497
Tumor
0.3
431
Tumor
0.3
123
Tumor
0.3
785
Tumor
0.3
483
Tumor
0.2
615
Tumor
0.2
427
Tumor
0.2
957
Tumor
0.2
137
Tumor
0.2
365
Tumor
0.2
967
Tumor
0.2
535
Tumor
0.2
375
Tumor
0.2
663
Tumor
0.2
283
Tumor
0.2
355
Tumor
0.2
383
Tumor
0.2
161
Tumor
0.2
883
Tumor
0.2
487
Tumor
0.2
257
Tumor
0.2
455
Tumor
0.2
425
Tumor
0.1
385
Tumor
0.1
343
Tumor
0.1
977
Tumor
0.1
213
Tumor
0.1
411
Tumor
0.1
195
Tumor
0.1
513
Tumor
0.1
525
Tumor
0.1
227
Tumor
0.1
963
Tumor
0.1
563
Tumor
0.1
1025
Tumor
0.1
925
Tumor
0.0
467
Tumor
0.0
192
Normal
0.0
861
Tumor
0.0
911
Tumor
0.0
697
Tumor
0.0
261
Tumor
0.0
311
Tumor
0.0
665
Tumor
0.0
478
Normal
0.0
721
Tumor
0.0
141
Tumor
0.0
267
Tumor
0.0
492
Normal
0.0
515
Tumor
0.0
357
Tumor
0.0
112
Tumor
0.0
873
Tumor
0.0
461
Tumor
0.0
395
Tumor
0.0
433
Tumor
-0.1
211
Tumor
-0.1
465
Tumor
-0.1
978
Normal
-0.1
852
Normal
-0.1
491
Tumor
-0.1
435
Tumor
-0.1
361
Tumor
-0.1
571
Tumor
-0.1
312
Normal
-0.1
857
Tumor
-0.1
913
Tumor
-0.1
917
Tumor
-0.1
185
Tumor
-0.1
741
Tumor
-0.1
423
Tumor
-0.1
278
Normal
-0.1
434
Normal
-0.1
297
Tumor
-0.1
713
Tumor
-0.1
443
Tumor
-0.2
224
Normal
-0.2
516
Normal
-0.2
1042
Normal
-0.2
421
Tumor
-0.2
538
Normal
-0.2
384
Normal
-0.2
444
Normal
-0.2
188
Normal
-0.2
284
Normal
-0.2
392
Normal
-0.2
451
Tumor
-0.2
1045
Tumor
-0.2
416
Normal
-0.2
394
Normal
-0.2
126
Normal
-0.2
386
Normal
-0.2
823
Tumor
-0.2
212
Normal
-0.2
727
Tumor
-0.2
388
Normal
-0.2
362
Normal
-0.2
533
Tumor
-0.2
627
Tumor
-0.2
628
Normal
-0.2
916
Normal
-0.2
477
Tumor
-0.2
1015
Tumor
-0.2
958
Normal
-0.2
138
Normal
-0.2
956
Normal
-0.2
982
Normal
-0.2
976
Normal
-0.2
187
Tumor
-0.2
984
Normal
-0.2
716
Normal
-0.2
146
Normal
-0.2
616
Normal
-0.2
937
Tumor
-0.3
396
Normal
-0.3
756
Normal
-0.3
474
Normal
-0.3
262
Normal
-0.3
536
Normal
-0.3
332
Normal
-0.3
558
Normal
-0.3
268
Normal
-0.3
148
Normal
-0.3
228
Normal
-0.3
272
Normal
-0.3
966
Normal
-0.3
1032
Normal
-0.3
366
Normal
-0.3
662
Normal
-0.3
113
Tumor
-0.3
494
Normal
-0.3
415
Tumor
-0.3
955
Tumor
-0.3
884
Normal
-0.3
145
Tumor
-0.3
172
Normal
-0.3
114
Normal
-0.3
1016
Normal
-0.3
952
Normal
-0.3
524
Normal
-0.3
328
Normal
-0.3
1014
Normal
-0.3
864
Normal
-0.3
738
Normal
-0.3
858
Normal
-0.3
232
Normal
-0.3
128
Normal
-0.3
912
Normal
-0.3
498
Normal
-0.3
481
Tumor
-0.3
472
Normal
-0.3
468
Normal
-0.3
456
Normal
-0.3
124
Normal
-0.3
314
Normal
-0.3
466
Normal
-0.3
528
Normal
-0.3
432
Normal
-0.3
353
Tumor
-0.3
714
Normal
-0.3
142
Normal
-0.3
744
Normal
-0.3
1022
Normal
-0.3
286
Normal
-0.3
954
Normal
-0.3
648
Normal
-0.3
186
Normal
-0.3
393
Tumor
-0.3
874
Normal
-0.3
816
Normal
-0.3
191
Tumor
-0.4
574
Normal
-0.4
162
Normal
-0.4
214
Normal
-0.4
664
Normal
-0.4
327
Tumor
-0.4
364
Normal
-0.4
564
Normal
-0.4
818
Normal
-0.4
968
Normal
-0.4
944
Normal
-0.4
572
Normal
-0.4
298
Normal
-0.4
352
Normal
-0.4
222
Normal
-0.4
1041
Tumor
-0.4
918
Normal
-0.4
546
Normal
-0.4
742
Normal
-0.4
1044
Normal
-0.4
412
Normal
-0.4
136
Normal
-0.4
436
Normal
-0.4
258
Normal
-0.4
868
Normal
-0.4
924
Normal
-0.4
554
Normal
-0.4
518
Normal
-0.4
746
Normal
-0.4
446
Normal
-0.4
882
Normal
-0.4
196
Normal
-0.4
778
Normal
-0.4
672
Normal
-0.4
464
Normal
-0.4
915
Tumor
-0.4
422
Normal
-0.4
964
Normal
-0.4
568
Normal
-0.4
428
Normal
-0.4
132
Normal
-0.4
696
Normal
-0.4
866
Normal
-0.4
356
Normal
-0.4
534
Normal
-0.4
1026
Normal
-0.4
728
Normal
-0.4
686
Normal
-0.4
424
Normal
-0.4
824
Normal
-0.4
517
Tumor
-0.4
354
Normal
-0.4
218
Normal
-0.4
786
Normal
-0.4
666
Normal
-0.4
723
Tumor
-0.4
914
Normal
-0.4
514
Normal
-0.4
344
Normal
-0.4
1046
Normal
-0.4
862
Normal
-0.4
111
Normal
-0.4
358
Normal
-0.4
488
Normal
-0.4
867
Tumor
-0.5
452
Normal
-0.5
922
Normal
-0.5
1028
Normal
-0.5
426
Normal
-0.5
448
Normal
-0.5
414
Normal
-0.5
878
Normal
-0.5
368
Normal
-0.5
722
Normal
-0.5
618
Normal
-0.5
814
Normal
-0.5
981
Tumor
-0.5
462
Normal
-0.5
376
Normal
-0.5
636
Normal
-0.5
342
Normal
-0.5
484
Normal
-0.5
642
Normal
-0.5
938
Normal
-0.5
526
Normal
-0.5
926
Normal
-0.5
482
Normal
-0.6
698
Normal
-0.6
1043
Tumor
-0.6
975
Tumor
-0.7
1031
Tumor
-1.0
813
Tumor
-1.0
135
Tumor
-1.1
715
Tumor
-1.1
671
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
