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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHOG is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
188.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
165.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
109.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
100.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
95.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
87.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
85.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
85.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
79.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
78.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
74.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
70.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
68.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
67.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
62.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
62.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
62.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
61.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
60.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
60.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
59.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
57.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
57.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
55.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
54.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
53.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
53.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
52.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
51.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
51.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
50.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
49.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
49.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
48.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
48.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
48.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
48.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
45.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
45.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
45.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
44.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
44.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
43.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
42.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
42.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
41.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
39.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
39.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
39.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
37.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
37.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
36.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
34.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
33.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
31.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
29.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
29.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
26.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHOG is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.8
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
114.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
111.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
99.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
77.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
65.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
62.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
59.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
57.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
56.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
52.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
49.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
47.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
46.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
45.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
42.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
40.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
39.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
39.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
38.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
37.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
36.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
32.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
0.7
343
Tumor
0.7
125
Tumor
0.6
283
Tumor
0.6
492
Normal
0.5
851
Tumor
0.5
724
Normal
0.5
536
Normal
0.5
1027
Tumor
0.5
553
Tumor
0.5
966
Normal
0.5
917
Tumor
0.5
661
Tumor
0.5
861
Tumor
0.5
538
Normal
0.4
823
Tumor
0.4
1031
Tumor
0.4
491
Tumor
0.4
952
Normal
0.4
817
Tumor
0.4
815
Tumor
0.4
975
Tumor
0.4
715
Tumor
0.3
963
Tumor
0.3
943
Tumor
0.3
223
Tumor
0.3
535
Tumor
0.3
461
Tumor
0.2
545
Tumor
0.2
478
Normal
0.2
1015
Tumor
0.2
916
Normal
0.2
434
Normal
0.2
455
Tumor
0.2
1043
Tumor
0.2
421
Tumor
0.2
713
Tumor
0.2
721
Tumor
0.2
672
Normal
0.2
224
Normal
0.2
355
Tumor
0.2
124
Normal
0.2
914
Normal
0.2
857
Tumor
0.2
467
Tumor
0.2
1028
Normal
0.2
524
Normal
0.2
554
Normal
0.2
877
Tumor
0.2
471
Tumor
0.2
171
Tumor
0.2
1025
Tumor
0.2
213
Tumor
0.2
813
Tumor
0.1
925
Tumor
0.1
671
Tumor
0.1
697
Tumor
0.1
285
Tumor
0.1
363
Tumor
0.1
146
Normal
0.1
447
Tumor
0.1
665
Tumor
0.1
954
Normal
0.1
498
Normal
0.1
493
Tumor
0.1
778
Normal
0.1
533
Tumor
0.1
483
Tumor
0.1
212
Normal
0.1
874
Normal
0.1
956
Normal
0.1
537
Tumor
0.1
375
Tumor
0.1
852
Normal
0.1
685
Tumor
0.1
881
Tumor
0.1
686
Normal
0.1
968
Normal
0.1
385
Tumor
0.1
185
Tumor
0.1
284
Normal
0.1
344
Normal
0.1
814
Normal
0.1
983
Tumor
0.1
518
Normal
0.1
921
Tumor
0.1
192
Normal
0.1
1032
Normal
0.1
415
Tumor
0.1
142
Normal
0.1
662
Normal
0.1
262
Normal
0.0
957
Tumor
0.0
311
Tumor
0.0
878
Normal
0.0
227
Tumor
0.0
977
Tumor
0.0
217
Tumor
0.0
367
Tumor
0.0
883
Tumor
0.0
816
Normal
0.0
976
Normal
0.0
474
Normal
0.0
1026
Normal
0.0
228
Normal
0.0
744
Normal
0.0
953
Tumor
0.0
958
Normal
0.0
716
Normal
0.0
268
Normal
0.0
525
Tumor
0.0
271
Tumor
0.0
867
Tumor
0.0
557
Tumor
0.0
188
Normal
0.0
368
Normal
0.0
141
Tumor
0.0
1042
Normal
0.0
286
Normal
0.0
915
Tumor
0.0
395
Tumor
0.0
755
Tumor
0.0
938
Normal
0.0
738
Normal
0.0
926
Normal
0.0
978
Normal
0.0
516
Normal
0.0
494
Normal
0.0
362
Normal
0.0
412
Normal
0.0
272
Normal
0.0
984
Normal
0.0
126
Normal
0.0
746
Normal
0.0
473
Tumor
0.0
145
Tumor
-0.1
1022
Normal
-0.1
111
Normal
-0.1
913
Tumor
-0.1
981
Tumor
-0.1
444
Normal
-0.1
1013
Tumor
-0.1
386
Normal
-0.1
546
Normal
-0.1
488
Normal
-0.1
138
Normal
-0.1
451
Tumor
-0.1
955
Tumor
-0.1
366
Normal
-0.1
364
Normal
-0.1
573
Tumor
-0.1
722
Normal
-0.1
696
Normal
-0.1
728
Normal
-0.1
666
Normal
-0.1
257
Tumor
-0.1
918
Normal
-0.1
664
Normal
-0.1
534
Normal
-0.1
147
Tumor
-0.1
416
Normal
-0.1
1044
Normal
-0.1
218
Normal
-0.1
328
Normal
-0.1
392
Normal
-0.1
923
Tumor
-0.1
384
Normal
-0.1
528
Normal
-0.1
123
Tumor
-0.1
882
Normal
-0.1
383
Tumor
-0.1
526
Normal
-0.1
424
Normal
-0.1
432
Normal
-0.1
698
Normal
-0.1
448
Normal
-0.1
937
Tumor
-0.1
727
Tumor
-0.1
737
Tumor
-0.1
884
Normal
-0.1
741
Tumor
-0.1
376
Normal
-0.1
924
Normal
-0.1
944
Normal
-0.1
391
Tumor
-0.1
422
Normal
-0.1
866
Normal
-0.1
472
Normal
-0.1
967
Tumor
-0.1
714
Normal
-0.2
258
Normal
-0.2
1014
Normal
-0.2
214
Normal
-0.2
982
Normal
-0.2
865
Tumor
-0.2
312
Normal
-0.2
864
Normal
-0.2
862
Normal
-0.2
365
Tumor
-0.2
785
Tumor
-0.2
484
Normal
-0.2
114
Normal
-0.2
951
Tumor
-0.2
922
Normal
-0.2
563
Tumor
-0.2
1045
Tumor
-0.2
1016
Normal
-0.2
617
Tumor
-0.2
477
Tumor
-0.2
723
Tumor
-0.2
558
Normal
-0.2
428
Normal
-0.2
468
Normal
-0.2
195
Tumor
-0.2
965
Tumor
-0.2
482
Normal
-0.2
964
Normal
-0.2
527
Tumor
-0.2
278
Normal
-0.2
137
Tumor
-0.2
231
Tumor
-0.2
131
Tumor
-0.2
342
Normal
-0.2
1021
Tumor
-0.2
358
Normal
-0.2
523
Tumor
-0.2
517
Tumor
-0.2
1041
Tumor
-0.2
574
Normal
-0.2
332
Normal
-0.2
354
Normal
-0.2
462
Normal
-0.2
396
Normal
-0.2
298
Normal
-0.2
1046
Normal
-0.2
456
Normal
-0.2
742
Normal
-0.2
172
Normal
-0.2
868
Normal
-0.2
411
Tumor
-0.2
911
Tumor
-0.2
514
Normal
-0.2
873
Tumor
-0.2
446
Normal
-0.2
756
Normal
-0.3
261
Tumor
-0.3
352
Normal
-0.3
148
Normal
-0.3
187
Tumor
-0.3
912
Normal
-0.3
786
Normal
-0.3
327
Tumor
-0.3
222
Normal
-0.3
232
Normal
-0.3
394
Normal
-0.3
426
Normal
-0.3
135
Tumor
-0.3
132
Normal
-0.3
361
Tumor
-0.3
136
Normal
-0.3
331
Tumor
-0.3
356
Normal
-0.3
435
Tumor
-0.3
297
Tumor
-0.3
186
Normal
-0.3
162
Normal
-0.3
466
Normal
-0.3
641
Tumor
-0.3
515
Tumor
-0.3
436
Normal
-0.3
824
Normal
-0.3
433
Tumor
-0.3
414
Normal
-0.3
858
Normal
-0.3
567
Tumor
-0.3
642
Normal
-0.3
427
Tumor
-0.3
196
Normal
-0.3
648
Normal
-0.3
628
Normal
-0.3
627
Tumor
-0.3
481
Tumor
-0.4
818
Normal
-0.4
513
Tumor
-0.4
221
Tumor
-0.4
777
Tumor
-0.4
618
Normal
-0.4
464
Normal
-0.4
388
Normal
-0.4
452
Normal
-0.4
487
Tumor
-0.4
497
Tumor
-0.4
387
Tumor
-0.4
161
Tumor
-0.4
463
Tumor
-0.4
313
Tumor
-0.4
267
Tumor
-0.4
745
Tumor
-0.4
413
Tumor
-0.4
128
Normal
-0.4
568
Normal
-0.4
636
Normal
-0.5
695
Tumor
-0.5
647
Tumor
-0.5
191
Tumor
-0.5
443
Tumor
-0.5
635
Tumor
-0.5
431
Tumor
-0.5
615
Tumor
-0.5
341
Tumor
-0.5
572
Normal
-0.5
393
Tumor
-0.5
616
Normal
-0.5
314
Normal
-0.5
277
Tumor
-0.5
743
Tumor
-0.6
663
Tumor
-0.6
127
Tumor
-0.6
423
Tumor
-0.6
113
Tumor
-0.6
353
Tumor
-0.6
445
Tumor
-0.6
863
Tumor
-0.6
564
Normal
-0.7
465
Tumor
-0.7
351
Tumor
-0.7
357
Tumor
-0.7
112
Tumor
-0.8
425
Tumor
-0.9
571
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
