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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC38A9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC38A9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
89.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.7
425
Tumor
1.5
965
Tumor
1.2
147
Tumor
0.9
271
Tumor
0.8
227
Tumor
0.8
471
Tumor
0.7
1025
Tumor
0.7
123
Tumor
0.7
697
Tumor
0.7
221
Tumor
0.7
571
Tumor
0.7
867
Tumor
0.7
745
Tumor
0.7
231
Tumor
0.7
1041
Tumor
0.6
353
Tumor
0.6
171
Tumor
0.6
363
Tumor
0.6
537
Tumor
0.6
685
Tumor
0.6
911
Tumor
0.6
957
Tumor
0.6
553
Tumor
0.5
573
Tumor
0.5
715
Tumor
0.5
981
Tumor
0.5
277
Tumor
0.5
695
Tumor
0.5
341
Tumor
0.4
913
Tumor
0.4
1027
Tumor
0.4
387
Tumor
0.4
1043
Tumor
0.4
873
Tumor
0.4
647
Tumor
0.4
923
Tumor
0.4
483
Tumor
0.4
491
Tumor
0.4
497
Tumor
0.4
261
Tumor
0.4
1022
Normal
0.4
125
Tumor
0.4
617
Tumor
0.4
435
Tumor
0.3
1031
Tumor
0.3
517
Tumor
0.3
455
Tumor
0.3
494
Normal
0.3
432
Normal
0.3
421
Tumor
0.3
938
Normal
0.3
451
Tumor
0.3
257
Tumor
0.3
883
Tumor
0.3
447
Tumor
0.3
124
Normal
0.3
1044
Normal
0.3
1042
Normal
0.2
314
Normal
0.2
1032
Normal
0.2
465
Tumor
0.2
921
Tumor
0.2
884
Normal
0.2
816
Normal
0.2
477
Tumor
0.2
488
Normal
0.2
527
Tumor
0.2
484
Normal
0.2
1045
Tumor
0.2
615
Tumor
0.2
312
Normal
0.2
824
Normal
0.2
1015
Tumor
0.2
493
Tumor
0.2
278
Normal
0.2
545
Tumor
0.2
864
Normal
0.2
881
Tumor
0.2
514
Normal
0.2
513
Tumor
0.2
967
Tumor
0.1
641
Tumor
0.1
526
Normal
0.1
463
Tumor
0.1
223
Tumor
0.1
546
Normal
0.1
977
Tumor
0.1
954
Normal
0.1
127
Tumor
0.1
498
Normal
0.1
665
Tumor
0.1
978
Normal
0.1
448
Normal
0.1
267
Tumor
0.1
721
Tumor
0.1
328
Normal
0.1
351
Tumor
0.1
1026
Normal
0.1
722
Normal
0.1
563
Tumor
0.1
114
Normal
0.1
128
Normal
0.1
912
Normal
0.1
518
Normal
0.1
737
Tumor
0.1
1021
Tumor
0.1
111
Normal
0.1
951
Tumor
0.1
868
Normal
0.1
955
Tumor
0.1
1016
Normal
0.1
1014
Normal
0.1
232
Normal
0.1
446
Normal
0.1
423
Tumor
0.1
861
Tumor
0.1
331
Tumor
0.1
535
Tumor
0.1
554
Normal
0.1
474
Normal
0.1
557
Tumor
0.1
852
Normal
0.0
1028
Normal
0.0
616
Normal
0.0
426
Normal
0.0
191
Tumor
0.0
567
Tumor
0.0
126
Normal
0.0
882
Normal
0.0
436
Normal
0.0
964
Normal
0.0
466
Normal
0.0
635
Tumor
0.0
975
Tumor
0.0
924
Normal
0.0
968
Normal
0.0
391
Tumor
0.0
487
Tumor
0.0
572
Normal
0.0
963
Tumor
0.0
866
Normal
0.0
395
Tumor
0.0
982
Normal
0.0
724
Normal
0.0
313
Tumor
0.0
112
Tumor
0.0
516
Normal
0.0
186
Normal
0.0
428
Normal
0.0
456
Normal
0.0
966
Normal
0.0
862
Normal
0.0
462
Normal
0.0
422
Normal
0.0
818
Normal
0.0
956
Normal
0.0
528
Normal
-0.1
777
Tumor
-0.1
393
Tumor
-0.1
185
Tumor
-0.1
756
Normal
-0.1
355
Tumor
-0.1
642
Normal
-0.1
523
Tumor
-0.1
1013
Tumor
-0.1
671
Tumor
-0.1
332
Normal
-0.1
431
Tumor
-0.1
427
Tumor
-0.1
925
Tumor
-0.1
492
Normal
-0.1
396
Normal
-0.1
424
Normal
-0.1
952
Normal
-0.1
113
Tumor
-0.1
564
Normal
-0.1
364
Normal
-0.1
627
Tumor
-0.1
618
Normal
-0.1
172
Normal
-0.1
958
Normal
-0.1
877
Tumor
-0.1
148
Normal
-0.1
525
Tumor
-0.1
262
Normal
-0.1
258
Normal
-0.1
953
Tumor
-0.1
444
Normal
-0.1
558
Normal
-0.1
464
Normal
-0.1
915
Tumor
-0.1
874
Normal
-0.2
272
Normal
-0.2
786
Normal
-0.2
817
Tumor
-0.2
696
Normal
-0.2
1046
Normal
-0.2
918
Normal
-0.2
746
Normal
-0.2
858
Normal
-0.2
388
Normal
-0.2
354
Normal
-0.2
311
Tumor
-0.2
461
Tumor
-0.2
536
Normal
-0.2
878
Normal
-0.2
937
Tumor
-0.2
298
Normal
-0.2
482
Normal
-0.2
716
Normal
-0.2
524
Normal
-0.2
851
Tumor
-0.2
187
Tumor
-0.2
686
Normal
-0.2
416
Normal
-0.2
481
Tumor
-0.2
283
Tumor
-0.2
394
Normal
-0.2
414
Normal
-0.2
976
Normal
-0.2
415
Tumor
-0.2
452
Normal
-0.2
916
Normal
-0.2
728
Normal
-0.3
213
Tumor
-0.3
412
Normal
-0.3
943
Tumor
-0.3
574
Normal
-0.3
741
Tumor
-0.3
568
Normal
-0.3
356
Normal
-0.3
984
Normal
-0.3
813
Tumor
-0.3
357
Tumor
-0.3
713
Tumor
-0.3
698
Normal
-0.3
857
Tumor
-0.3
814
Normal
-0.3
714
Normal
-0.3
538
Normal
-0.3
515
Tumor
-0.3
211
Tumor
-0.3
926
Normal
-0.3
914
Normal
-0.3
534
Normal
-0.3
723
Tumor
-0.3
663
Tumor
-0.3
297
Tumor
-0.3
922
Normal
-0.3
468
Normal
-0.4
385
Tumor
-0.4
472
Normal
-0.4
188
Normal
-0.4
386
Normal
-0.4
352
Normal
-0.4
218
Normal
-0.4
628
Normal
-0.4
268
Normal
-0.4
285
Tumor
-0.4
433
Tumor
-0.4
636
Normal
-0.4
392
Normal
-0.4
222
Normal
-0.4
533
Tumor
-0.4
478
Normal
-0.4
413
Tumor
-0.4
944
Normal
-0.4
738
Normal
-0.4
443
Tumor
-0.4
662
Normal
-0.4
785
Tumor
-0.4
342
Normal
-0.4
434
Normal
-0.4
743
Tumor
-0.4
228
Normal
-0.5
778
Normal
-0.5
727
Tumor
-0.5
664
Normal
-0.5
823
Tumor
-0.5
815
Tumor
-0.5
411
Tumor
-0.5
214
Normal
-0.5
755
Tumor
-0.5
212
Normal
-0.5
343
Tumor
-0.5
196
Normal
-0.5
467
Tumor
-0.5
742
Normal
-0.6
983
Tumor
-0.6
217
Tumor
-0.6
344
Normal
-0.6
661
Tumor
-0.6
195
Tumor
-0.6
286
Normal
-0.6
648
Normal
-0.6
284
Normal
-0.6
666
Normal
-0.7
162
Normal
-0.7
358
Normal
-0.7
161
Tumor
-0.7
327
Tumor
-0.7
863
Tumor
-0.8
445
Tumor
-0.8
672
Normal
-0.8
224
Normal
-0.8
192
Normal
-0.8
744
Normal
-0.9
917
Tumor
-0.9
865
Tumor
-1.0
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
