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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHMT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
636.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
525.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
295.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
278.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
248.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
243.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
223.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
221.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
204.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
193.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
180.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
179.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
178.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
178.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
177.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
175.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
173.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
170.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
169.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
168.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
158.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
157.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
157.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
156.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
154.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
154.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
152.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
143.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
143.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
134.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
132.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
128.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
128.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
127.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
126.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
124.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
124.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
122.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
116.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
116.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
116.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
116.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
115.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
114.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
110.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
107.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
106.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
106.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
105.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
104.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
104.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
103.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
102.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
101.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
100.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
99.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
99.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
97.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
97.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
96.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
95.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
95.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
91.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
91.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
90.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
89.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
89.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
89.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
88.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
88.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
87.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
87.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
87.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
86.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
85.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
83.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
83.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
82.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
81.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
81.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
80.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
79.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
77.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
76.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
75.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
75.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
75.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
75.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
75.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
74.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
74.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
74.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
72.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
71.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
70.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
70.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
70.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
70.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
69.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
69.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
69.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
68.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
68.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
68.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
68.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
68.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
67.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
66.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
66.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
65.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
65.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
65.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
65.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
65.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
65.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
63.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
63.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
63.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
62.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
62.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
62.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
62.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
61.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
61.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
61.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
59.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
59.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
59.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
58.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
57.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
57.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
56.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
56.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
55.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
54.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
54.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
54.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
53.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
53.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
53.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
53.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
53.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
52.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
50.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
50.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
49.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
49.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
49.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
48.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
48.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
48.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
48.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
47.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
46.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
46.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
45.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
44.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
44.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
44.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
44.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
44.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
43.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
42.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
42.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
41.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
41.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
40.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
39.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
39.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
39.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
38.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
38.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
38.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
38.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
37.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
33.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
32.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
31.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
30.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHMT1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
85.8
Number of samples
231
Samples
Sample
Description
TPM
DO45235
0 years, female, NA, stage:1, alive, 900 days
425.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
361.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
331.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
302.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
265.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
262.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
254.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
249.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
248.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
238.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
236.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
228.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
226.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
225.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
225.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
220.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
211.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
207.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
204.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
203.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
201.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
199.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
196.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
193.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
186.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
184.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
183.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
183.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
176.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
170.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
167.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
164.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
164.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
164.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
162.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
161.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
152.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
151.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
150.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
148.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
147.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
146.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
145.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
143.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
133.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
132.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
130.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
128.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
127.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
127.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
126.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
123.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
122.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
121.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
120.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
120.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
119.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
119.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
118.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
117.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
115.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
114.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
113.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
110.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
110.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
108.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
108.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
107.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
104.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
102.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
102.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
101.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
100.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
99.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
98.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
95.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
93.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
93.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
93.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
92.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
92.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
89.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
88.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
88.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
88.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
87.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
87.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
87.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
86.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
85.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
85.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
84.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
83.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
82.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
81.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
80.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
79.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
78.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
77.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
77.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
76.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
76.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
75.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
74.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
74.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
74.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
73.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
73.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
73.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
72.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
71.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
71.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
70.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
69.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
68.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
67.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
66.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
66.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
66.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
65.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
64.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
63.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
63.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
60.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
59.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
58.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
58.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
58.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
56.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
56.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
56.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
56.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
55.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
55.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
54.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
53.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
53.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
52.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
52.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
52.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
51.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
51.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
50.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
50.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
49.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
49.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
48.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
48.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
47.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
44.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
43.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
43.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
42.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
39.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
38.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
34.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1026
Normal
1.2
436
Normal
1.1
482
Normal
1.1
738
Normal
1.1
723
Tumor
1.1
746
Normal
1.0
818
Normal
1.0
742
Normal
1.0
912
Normal
1.0
924
Normal
1.0
938
Normal
1.0
162
Normal
1.0
858
Normal
0.9
874
Normal
0.9
462
Normal
0.9
722
Normal
0.9
728
Normal
0.9
714
Normal
0.9
432
Normal
0.9
214
Normal
0.9
786
Normal
0.8
342
Normal
0.8
114
Normal
0.8
428
Normal
0.8
982
Normal
0.8
298
Normal
0.8
964
Normal
0.8
873
Tumor
0.8
222
Normal
0.8
698
Normal
0.8
862
Normal
0.8
618
Normal
0.8
466
Normal
0.8
1022
Normal
0.8
172
Normal
0.7
952
Normal
0.7
824
Normal
0.7
864
Normal
0.7
128
Normal
0.7
488
Normal
0.7
882
Normal
0.6
696
Normal
0.6
426
Normal
0.6
161
Tumor
0.6
922
Normal
0.6
716
Normal
0.6
414
Normal
0.6
484
Normal
0.6
148
Normal
0.6
616
Normal
0.6
744
Normal
0.6
1046
Normal
0.6
648
Normal
0.6
816
Normal
0.6
866
Normal
0.6
1016
Normal
0.6
981
Tumor
0.6
132
Normal
0.6
228
Normal
0.6
518
Normal
0.6
332
Normal
0.6
884
Normal
0.6
664
Normal
0.6
474
Normal
0.5
564
Normal
0.5
394
Normal
0.5
914
Normal
0.5
232
Normal
0.5
314
Normal
0.5
186
Normal
0.5
328
Normal
0.5
472
Normal
0.5
272
Normal
0.5
327
Tumor
0.5
258
Normal
0.5
868
Normal
0.5
968
Normal
0.5
745
Tumor
0.5
456
Normal
0.5
356
Normal
0.5
534
Normal
0.5
424
Normal
0.5
944
Normal
0.5
267
Tumor
0.4
392
Normal
0.4
976
Normal
0.4
196
Normal
0.4
1032
Normal
0.4
1014
Normal
0.4
662
Normal
0.4
136
Normal
0.4
966
Normal
0.4
446
Normal
0.4
468
Normal
0.4
1044
Normal
0.4
513
Tumor
0.4
448
Normal
0.4
666
Normal
0.4
412
Normal
0.4
1042
Normal
0.4
142
Normal
0.4
955
Tumor
0.4
756
Normal
0.4
358
Normal
0.4
778
Normal
0.4
852
Normal
0.4
528
Normal
0.4
278
Normal
0.4
368
Normal
0.4
284
Normal
0.4
464
Normal
0.4
111
Normal
0.3
926
Normal
0.3
376
Normal
0.3
878
Normal
0.3
568
Normal
0.3
642
Normal
0.3
956
Normal
0.3
984
Normal
0.3
138
Normal
0.3
422
Normal
0.3
366
Normal
0.3
364
Normal
0.3
435
Tumor
0.3
526
Normal
0.3
554
Normal
0.3
411
Tumor
0.3
218
Normal
0.3
452
Normal
0.2
344
Normal
0.2
615
Tumor
0.2
1028
Normal
0.2
918
Normal
0.2
727
Tumor
0.2
286
Normal
0.2
546
Normal
0.2
416
Normal
0.2
572
Normal
0.2
396
Normal
0.2
481
Tumor
0.2
558
Normal
0.2
672
Normal
0.2
958
Normal
0.2
386
Normal
0.2
212
Normal
0.2
514
Normal
0.2
494
Normal
0.2
384
Normal
0.2
1027
Tumor
0.2
146
Normal
0.2
636
Normal
0.2
978
Normal
0.1
628
Normal
0.1
388
Normal
0.1
312
Normal
0.1
516
Normal
0.1
954
Normal
0.1
574
Normal
0.1
1013
Tumor
0.1
695
Tumor
0.1
262
Normal
0.1
126
Normal
0.1
352
Normal
0.1
686
Normal
0.0
188
Normal
0.0
362
Normal
0.0
268
Normal
0.0
498
Normal
0.0
224
Normal
0.0
663
Tumor
0.0
857
Tumor
0.0
354
Normal
0.0
124
Normal
-0.1
492
Normal
-0.1
477
Tumor
-0.1
533
Tumor
-0.1
721
Tumor
-0.2
1043
Tumor
-0.2
261
Tumor
-0.2
353
Tumor
-0.2
478
Normal
-0.2
571
Tumor
-0.2
137
Tumor
-0.2
434
Normal
-0.2
112
Tumor
-0.2
685
Tumor
-0.2
953
Tumor
-0.2
937
Tumor
-0.3
741
Tumor
-0.3
737
Tumor
-0.3
916
Normal
-0.3
113
Tumor
-0.3
755
Tumor
-0.3
147
Tumor
-0.3
536
Normal
-0.3
227
Tumor
-0.3
713
Tumor
-0.3
415
Tumor
-0.3
145
Tumor
-0.3
365
Tumor
-0.3
538
Normal
-0.4
465
Tumor
-0.4
427
Tumor
-0.4
361
Tumor
-0.4
421
Tumor
-0.4
777
Tumor
-0.4
195
Tumor
-0.4
487
Tumor
-0.4
444
Normal
-0.4
313
Tumor
-0.4
557
Tumor
-0.4
217
Tumor
-0.5
127
Tumor
-0.5
192
Normal
-0.5
423
Tumor
-0.5
431
Tumor
-0.5
957
Tumor
-0.5
524
Normal
-0.5
277
Tumor
-0.6
627
Tumor
-0.6
1041
Tumor
-0.6
355
Tumor
-0.6
915
Tumor
-0.6
341
Tumor
-0.6
963
Tumor
-0.6
357
Tumor
-0.6
461
Tumor
-0.7
1025
Tumor
-0.7
141
Tumor
-0.7
515
Tumor
-0.7
451
Tumor
-0.7
1045
Tumor
-0.7
814
Normal
-0.7
647
Tumor
-0.8
911
Tumor
-0.8
867
Tumor
-0.8
125
Tumor
-0.8
785
Tumor
-0.8
813
Tumor
-0.8
257
Tumor
-0.8
823
Tumor
-0.8
563
Tumor
-0.8
191
Tumor
-0.9
231
Tumor
-0.9
921
Tumor
-0.9
967
Tumor
-0.9
363
Tumor
-0.9
975
Tumor
-0.9
467
Tumor
-0.9
617
Tumor
-0.9
943
Tumor
-0.9
375
Tumor
-0.9
491
Tumor
-1.0
951
Tumor
-1.0
865
Tumor
-1.0
525
Tumor
-1.0
187
Tumor
-1.0
473
Tumor
-1.0
863
Tumor
-1.0
883
Tumor
-1.0
851
Tumor
-1.0
223
Tumor
-1.0
185
Tumor
-1.0
447
Tumor
-1.0
213
Tumor
-1.0
171
Tumor
-1.0
493
Tumor
-1.1
553
Tumor
-1.1
567
Tumor
-1.1
483
Tumor
-1.1
537
Tumor
-1.1
445
Tumor
-1.2
331
Tumor
-1.2
433
Tumor
-1.2
817
Tumor
-1.2
1015
Tumor
-1.2
635
Tumor
-1.2
135
Tumor
-1.3
917
Tumor
-1.3
861
Tumor
-1.3
413
Tumor
-1.3
641
Tumor
-1.3
913
Tumor
-1.3
297
Tumor
-1.3
573
Tumor
-1.3
977
Tumor
-1.4
923
Tumor
-1.4
1031
Tumor
-1.4
527
Tumor
-1.4
724
Normal
-1.4
925
Tumor
-1.4
443
Tumor
-1.4
881
Tumor
-1.4
1021
Tumor
-1.5
425
Tumor
-1.5
393
Tumor
-1.5
383
Tumor
-1.5
983
Tumor
-1.5
497
Tumor
-1.5
697
Tumor
-1.5
671
Tumor
-1.5
387
Tumor
-1.5
123
Tumor
-1.6
283
Tumor
-1.6
463
Tumor
-1.6
965
Tumor
-1.6
517
Tumor
-1.6
665
Tumor
-1.6
311
Tumor
-1.6
221
Tumor
-1.6
877
Tumor
-1.6
523
Tumor
-1.7
271
Tumor
-1.7
455
Tumor
-1.7
351
Tumor
-1.7
743
Tumor
-1.7
715
Tumor
-1.7
391
Tumor
-1.7
471
Tumor
-1.8
545
Tumor
-1.8
395
Tumor
-1.8
367
Tumor
-1.8
815
Tumor
-1.8
343
Tumor
-1.8
285
Tumor
-1.9
131
Tumor
-1.9
661
Tumor
-1.9
211
Tumor
-2.1
535
Tumor
-2.3
385
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.