We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO1D is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
43.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO1D is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
48.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
47.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
33.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
1.5
471
Tumor
1.3
641
Tumor
1.2
921
Tumor
1.1
271
Tumor
1.0
881
Tumor
0.9
975
Tumor
0.8
192
Normal
0.8
553
Tumor
0.7
311
Tumor
0.7
444
Normal
0.6
917
Tumor
0.6
277
Tumor
0.6
421
Tumor
0.6
1031
Tumor
0.6
395
Tumor
0.6
817
Tumor
0.6
445
Tumor
0.6
563
Tumor
0.6
221
Tumor
0.5
455
Tumor
0.5
538
Normal
0.5
141
Tumor
0.5
131
Tumor
0.5
937
Tumor
0.5
268
Normal
0.4
878
Normal
0.4
777
Tumor
0.4
185
Tumor
0.4
384
Normal
0.4
536
Normal
0.4
492
Normal
0.4
883
Tumor
0.4
422
Normal
0.4
124
Normal
0.4
744
Normal
0.4
982
Normal
0.4
461
Tumor
0.4
863
Tumor
0.4
478
Normal
0.4
224
Normal
0.4
785
Tumor
0.4
126
Normal
0.3
365
Tumor
0.3
146
Normal
0.3
913
Tumor
0.3
355
Tumor
0.3
147
Tumor
0.3
916
Normal
0.3
386
Normal
0.3
433
Tumor
0.3
958
Normal
0.3
413
Tumor
0.3
448
Normal
0.3
297
Tumor
0.3
874
Normal
0.3
716
Normal
0.3
214
Normal
0.3
672
Normal
0.3
423
Tumor
0.3
545
Tumor
0.3
223
Tumor
0.3
416
Normal
0.3
412
Normal
0.3
498
Normal
0.2
516
Normal
0.2
354
Normal
0.2
852
Normal
0.2
823
Tumor
0.2
954
Normal
0.2
618
Normal
0.2
447
Tumor
0.2
392
Normal
0.2
142
Normal
0.2
474
Normal
0.2
364
Normal
0.2
443
Tumor
0.2
746
Normal
0.2
113
Tumor
0.2
918
Normal
0.2
352
Normal
0.2
434
Normal
0.2
267
Tumor
0.2
857
Tumor
0.2
463
Tumor
0.2
922
Normal
0.2
388
Normal
0.2
332
Normal
0.2
664
Normal
0.2
414
Normal
0.2
976
Normal
0.2
814
Normal
0.2
394
Normal
0.2
1028
Normal
0.2
312
Normal
0.2
284
Normal
0.2
344
Normal
0.2
524
Normal
0.1
636
Normal
0.1
924
Normal
0.1
786
Normal
0.1
462
Normal
0.1
816
Normal
0.1
963
Tumor
0.1
1045
Tumor
0.1
342
Normal
0.1
513
Tumor
0.1
778
Normal
0.1
666
Normal
0.1
627
Tumor
0.1
128
Normal
0.1
363
Tumor
0.1
884
Normal
0.1
572
Normal
0.1
396
Normal
0.1
376
Normal
0.1
426
Normal
0.1
671
Tumor
0.1
415
Tumor
0.1
188
Normal
0.1
642
Normal
0.1
1032
Normal
0.1
186
Normal
0.1
314
Normal
0.1
484
Normal
0.1
212
Normal
0.1
432
Normal
0.1
211
Tumor
0.1
196
Normal
0.1
362
Normal
0.1
138
Normal
0.1
222
Normal
0.1
868
Normal
0.1
818
Normal
0.1
298
Normal
0.1
111
Normal
0.1
472
Normal
0.1
662
Normal
0.1
136
Normal
0.1
554
Normal
0.1
278
Normal
0.1
424
Normal
0.1
882
Normal
0.1
951
Tumor
0.1
528
Normal
0.1
527
Tumor
0.1
1044
Normal
0.1
162
Normal
0.1
956
Normal
0.1
628
Normal
0.1
968
Normal
0.1
686
Normal
0.1
482
Normal
0.1
984
Normal
0.1
114
Normal
0.0
187
Tumor
0.0
648
Normal
0.0
428
Normal
0.0
964
Normal
0.0
568
Normal
0.0
358
Normal
0.0
695
Tumor
0.0
824
Normal
0.0
952
Normal
0.0
862
Normal
0.0
558
Normal
0.0
756
Normal
0.0
228
Normal
0.0
331
Tumor
0.0
1022
Normal
0.0
546
Normal
0.0
262
Normal
0.0
327
Tumor
0.0
866
Normal
0.0
435
Tumor
0.0
385
Tumor
0.0
1042
Normal
0.0
446
Normal
0.0
286
Normal
0.0
1021
Tumor
0.0
436
Normal
0.0
232
Normal
0.0
456
Normal
0.0
873
Tumor
0.0
715
Tumor
0.0
483
Tumor
0.0
696
Normal
0.0
132
Normal
0.0
145
Tumor
0.0
148
Normal
0.0
218
Normal
0.0
383
Tumor
0.0
466
Normal
0.0
195
Tumor
0.0
944
Normal
0.0
341
Tumor
0.0
912
Normal
0.0
172
Normal
0.0
534
Normal
0.0
488
Normal
0.0
938
Normal
0.0
864
Normal
0.0
698
Normal
0.0
425
Tumor
0.0
738
Normal
0.0
452
Normal
0.0
755
Tumor
0.0
468
Normal
-0.1
477
Tumor
-0.1
926
Normal
-0.1
1016
Normal
-0.1
464
Normal
-0.1
137
Tumor
-0.1
368
Normal
-0.1
272
Normal
-0.1
366
Normal
-0.1
526
Normal
-0.1
357
Tumor
-0.1
564
Normal
-0.1
494
Normal
-0.1
723
Tumor
-0.1
966
Normal
-0.1
375
Tumor
-0.1
356
Normal
-0.1
858
Normal
-0.1
1014
Normal
-0.1
914
Normal
-0.1
813
Tumor
-0.1
943
Tumor
-0.1
865
Tumor
-0.1
616
Normal
-0.1
1046
Normal
-0.1
978
Normal
-0.1
191
Tumor
-0.1
925
Tumor
-0.1
161
Tumor
-0.1
328
Normal
-0.1
977
Tumor
-0.1
411
Tumor
-0.1
877
Tumor
-0.1
923
Tumor
-0.1
514
Normal
-0.2
231
Tumor
-0.2
1026
Normal
-0.2
647
Tumor
-0.2
258
Normal
-0.2
431
Tumor
-0.2
285
Tumor
-0.2
955
Tumor
-0.2
467
Tumor
-0.2
481
Tumor
-0.2
361
Tumor
-0.2
518
Normal
-0.2
393
Tumor
-0.2
533
Tumor
-0.2
728
Normal
-0.2
737
Tumor
-0.2
697
Tumor
-0.2
714
Normal
-0.2
353
Tumor
-0.2
213
Tumor
-0.2
665
Tumor
-0.2
722
Normal
-0.2
171
Tumor
-0.2
491
Tumor
-0.3
127
Tumor
-0.3
217
Tumor
-0.3
535
Tumor
-0.3
283
Tumor
-0.3
915
Tumor
-0.3
493
Tumor
-0.3
721
Tumor
-0.3
427
Tumor
-0.3
135
Tumor
-0.3
525
Tumor
-0.3
574
Normal
-0.3
911
Tumor
-0.3
387
Tumor
-0.3
465
Tumor
-0.3
473
Tumor
-0.3
497
Tumor
-0.3
1015
Tumor
-0.3
617
Tumor
-0.4
112
Tumor
-0.4
557
Tumor
-0.4
517
Tumor
-0.4
967
Tumor
-0.4
487
Tumor
-0.4
851
Tumor
-0.4
957
Tumor
-0.4
1027
Tumor
-0.5
713
Tumor
-0.5
1013
Tumor
-0.5
313
Tumor
-0.5
742
Normal
-0.5
1043
Tumor
-0.5
727
Tumor
-0.5
615
Tumor
-0.5
523
Tumor
-0.5
227
Tumor
-0.6
261
Tumor
-0.6
815
Tumor
-0.6
123
Tumor
-0.6
724
Normal
-0.6
861
Tumor
-0.6
1025
Tumor
-0.6
745
Tumor
-0.6
351
Tumor
-0.6
343
Tumor
-0.6
567
Tumor
-0.7
981
Tumor
-0.7
743
Tumor
-0.7
515
Tumor
-0.7
965
Tumor
-0.7
125
Tumor
-0.8
661
Tumor
-0.8
663
Tumor
-0.8
953
Tumor
-0.8
367
Tumor
-0.8
257
Tumor
-0.9
983
Tumor
-0.9
571
Tumor
-0.9
1041
Tumor
-1.0
451
Tumor
-1.0
741
Tumor
-1.0
867
Tumor
-1.0
537
Tumor
-1.1
391
Tumor
-1.2
573
Tumor
-1.3
685
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
