MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.7 nTPM
HPA Brain:48.9 nTPM
GTEx:12.7 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:12.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.7
1830 Male, age 51, unknown 48.6
2411 Female, age 72, unknown 44.0
2019 Male, age 18, unknown 43.4
1833 Male, age 53, unknown 42.9
1870 Female, age 42, unknown 39.9
2828 Female, age 72, unknown 32.5
2666 Male, age 74, left hemisphere 29.1
2586 Male, age 75, left hemisphere 28.4
2219 Male, age 76, both hemispheres 24.1
1827 Male, age 72, unknown 24.0
Dorsal raphe nucleus
nTPM: 26.1
2750 Male, age 76, both hemispheres 51.6
2016 Female, age 72, unknown 25.5
1828 Male, age 53, unknown 24.4
2047 Male, age 72, unknown 16.4
2298 Female, age 72, unknown 12.3
Inferior colliculus
nTPM: 21.7
1890 Male, age 53, unknown 26.9
1848 Female, age 42, unknown 21.8
2849 Male, age 72, unknown 19.4
2097 Female, age 72, unknown 18.5
Median raphe nucleus
nTPM: 21.9
2220 Male, age 76, midline 21.9
Periaquaductal grey, anterior
nTPM: 18.8
1947 Male, age 18, unknown 20.5
2502 Female, age 75, unknown 20.1
1795 Male, age 51, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 14.4
2464 Female, age 72, unknown 24.7
1831 Male, age 72, unknown 15.5
1840 Male, age 53, unknown 8.9
2850 Male, age 76, both hemispheres 8.5
Periaquaductal grey, lateral
nTPM: 17.7
2272 Male, age 74, both hemispheres 21.9
2053 Male, age 18, unknown 20.2
2140 Male, age 76, both hemispheres 10.9
Pretectal area
nTPM: 21.2
2316 Male, age 76, right hemisphere 33.5
1815 Male, age 53, unknown 29.3
2407 Male, age 75, both hemispheres 26.9
2007 Male, age 72, unknown 24.8
1817 Female, age 42, unknown 22.8
2825 Male, age 18, unknown 21.1
2273 Male, age 74, both hemispheres 18.3
2224 Female, age 72, unknown 17.1
2667 Female, age 75, unknown 14.1
1944 Female, age 72, unknown 13.0
1816 Male, age 51, unknown 12.0
Red nucleus
nTPM: 48.9
1865 Male, age 51, unknown 60.5
1904 Male, age 53, unknown 57.6
2823 Male, age 76, right hemisphere 56.4
2227 Male, age 72, unknown 52.9
2769 Male, age 72, unknown 52.2
1821 Female, age 72, unknown 50.9
2785 Male, age 18, unknown 49.8
2503 Female, age 72, unknown 46.6
2588 Male, age 74, left hemisphere 44.4
1954 Female, age 42, unknown 41.1
2584 Male, age 75, left hemisphere 37.1
2725 Female, age 75, unknown 36.8
Substantia nigra
nTPM: 25.9
2583 Male, age 75, right hemisphere 34.5
2590 Female, age 75, unknown 32.2
2409 Female, age 72, unknown 31.9
1851 Male, age 51, unknown 31.2
1889 Female, age 72, unknown 27.7
2241 Male, age 72, unknown 23.0
1941 Male, age 53, unknown 22.3
2699 Male, age 18, unknown 20.4
1916 Female, age 42, unknown 18.8
2665 Male, age 74, both hemispheres 16.5
Superior colliculus
nTPM: 28.8
1913 Female, age 42, unknown 43.1
1995 Male, age 72, unknown 38.8
1895 Male, age 76, right hemisphere 38.1
2668 Female, age 75, unknown 36.5
2587 Male, age 74, left hemisphere 31.9
1839 Male, age 51, unknown 28.1
1796 Male, age 53, unknown 20.4
2261 Male, age 18, unknown 18.8
2087 Female, age 72, unknown 16.3
2664 Male, age 75, both hemispheres 16.3
Ventral tegmental area
nTPM: 30.2
2223 Female, age 72, unknown 49.5
2410 Female, age 72, unknown 36.0
2218 Male, age 76, both hemispheres 25.7
1942 Male, age 51, unknown 24.9
1915 Female, age 42, unknown 23.2
2021 Male, age 53, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.7
Samples: 139

Max nTPM: 45.3
Min nTPM: 2.8
Std nTPM: 7.5
Median nTPM: 11.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 37.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 36.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 34.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 33.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 32.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 29.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 23.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 23.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.8
FF:10158-103A5 76 years, female 57.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 44.8
Min nTPM: 21.5
Sample A Female 27.4
Sample B Female 21.5
Sample C Male 23.8
Sample D Male 44.8
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 48.8
Min nTPM: 18.4
Sample A Female 48.8
Sample B Female 30.4
Sample C Male 18.4
Sample D Male 20.6
Periaqueductal gray
nTPM: 20.7
Samples: 3

Max nTPM: 26.0
Min nTPM: 15.7
Sample B Female 26.0
Sample C Male 15.7
Sample D Male 20.5
Superior colliculi
nTPM: 25.2
Samples: 4

Max nTPM: 29.7
Min nTPM: 18.6
Sample A Female 26.9
Sample B Female 18.6
Sample C Male 25.5
Sample D Male 29.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 13.5
Min nTPM: 12.0
Sample A Male 12.0
Sample B Male 12.2
Sample C Female 13.5
Sample D Female 13.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69782007 Antisense, RP_050505_02_B02, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org