We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPRYD4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPRYD4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
59.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
56.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
52.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
48.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
46.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
44.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
42.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
39.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
38.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
35.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
30.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.6
465
Tumor
1.1
615
Tumor
0.9
695
Tumor
0.9
128
Normal
0.9
636
Normal
0.9
513
Tumor
0.9
127
Tumor
0.9
564
Normal
0.8
436
Normal
0.8
388
Normal
0.7
912
Normal
0.7
148
Normal
0.7
944
Normal
0.7
742
Normal
0.7
818
Normal
0.7
698
Normal
0.7
172
Normal
0.7
864
Normal
0.7
487
Tumor
0.7
314
Normal
0.7
298
Normal
0.7
162
Normal
0.7
862
Normal
0.6
924
Normal
0.6
568
Normal
0.6
462
Normal
0.6
618
Normal
0.6
824
Normal
0.6
186
Normal
0.6
344
Normal
0.6
196
Normal
0.6
232
Normal
0.6
428
Normal
0.6
738
Normal
0.6
648
Normal
0.6
546
Normal
0.6
466
Normal
0.6
426
Normal
0.6
723
Tumor
0.6
342
Normal
0.6
218
Normal
0.6
356
Normal
0.6
616
Normal
0.6
1022
Normal
0.6
394
Normal
0.6
722
Normal
0.6
214
Normal
0.5
352
Normal
0.5
332
Normal
0.5
414
Normal
0.5
484
Normal
0.5
1046
Normal
0.5
914
Normal
0.5
528
Normal
0.5
868
Normal
0.5
534
Normal
0.5
286
Normal
0.5
922
Normal
0.5
664
Normal
0.5
728
Normal
0.5
137
Tumor
0.5
448
Normal
0.5
358
Normal
0.5
714
Normal
0.5
926
Normal
0.5
756
Normal
0.5
778
Normal
0.5
642
Normal
0.5
1014
Normal
0.5
628
Normal
0.5
222
Normal
0.5
666
Normal
0.5
113
Tumor
0.5
984
Normal
0.5
816
Normal
0.5
488
Normal
0.5
852
Normal
0.5
376
Normal
0.5
142
Normal
0.5
354
Normal
0.5
452
Normal
0.5
746
Normal
0.5
866
Normal
0.5
111
Normal
0.5
716
Normal
0.5
786
Normal
0.5
114
Normal
0.5
937
Tumor
0.5
258
Normal
0.5
884
Normal
0.5
873
Tumor
0.5
423
Tumor
0.4
412
Normal
0.4
424
Normal
0.4
938
Normal
0.4
558
Normal
0.4
954
Normal
0.4
955
Tumor
0.4
482
Normal
0.4
858
Normal
0.4
132
Normal
0.4
468
Normal
0.4
744
Normal
0.4
472
Normal
0.4
364
Normal
0.4
713
Tumor
0.4
882
Normal
0.4
328
Normal
0.4
422
Normal
0.4
228
Normal
0.4
696
Normal
0.4
1026
Normal
0.4
964
Normal
0.4
1032
Normal
0.4
432
Normal
0.4
686
Normal
0.4
278
Normal
0.4
1044
Normal
0.4
672
Normal
0.4
1028
Normal
0.4
456
Normal
0.3
1045
Tumor
0.3
392
Normal
0.3
435
Tumor
0.3
224
Normal
0.3
446
Normal
0.3
126
Normal
0.3
464
Normal
0.3
1016
Normal
0.3
662
Normal
0.3
916
Normal
0.3
136
Normal
0.3
227
Tumor
0.3
878
Normal
0.3
327
Tumor
0.3
918
Normal
0.3
952
Normal
0.3
138
Normal
0.3
526
Normal
0.3
262
Normal
0.3
874
Normal
0.3
416
Normal
0.3
956
Normal
0.3
574
Normal
0.3
727
Tumor
0.3
968
Normal
0.3
982
Normal
0.3
554
Normal
0.3
396
Normal
0.3
146
Normal
0.3
518
Normal
0.2
1027
Tumor
0.2
494
Normal
0.2
474
Normal
0.2
477
Tumor
0.2
284
Normal
0.2
514
Normal
0.2
1042
Normal
0.2
976
Normal
0.2
366
Normal
0.2
362
Normal
0.2
481
Tumor
0.2
312
Normal
0.2
124
Normal
0.2
384
Normal
0.2
368
Normal
0.2
978
Normal
0.2
272
Normal
0.2
572
Normal
0.2
188
Normal
0.1
958
Normal
0.1
434
Normal
0.1
966
Normal
0.1
365
Tumor
0.1
386
Normal
0.1
212
Normal
0.1
925
Tumor
0.1
516
Normal
0.1
1043
Tumor
0.1
647
Tumor
0.1
145
Tumor
0.1
524
Normal
0.1
981
Tumor
0.1
721
Tumor
0.1
361
Tumor
0.1
851
Tumor
0.0
112
Tumor
0.0
755
Tumor
0.0
777
Tumor
0.0
538
Normal
0.0
341
Tumor
0.0
641
Tumor
0.0
478
Normal
0.0
563
Tumor
-0.1
353
Tumor
-0.1
363
Tumor
-0.1
1041
Tumor
-0.1
515
Tumor
-0.1
415
Tumor
-0.1
217
Tumor
-0.1
571
Tumor
-0.1
268
Normal
-0.1
261
Tumor
-0.1
967
Tumor
-0.1
431
Tumor
-0.1
1025
Tumor
-0.1
1031
Tumor
-0.2
433
Tumor
-0.2
915
Tumor
-0.2
393
Tumor
-0.2
192
Normal
-0.2
557
Tumor
-0.2
267
Tumor
-0.2
444
Normal
-0.2
498
Normal
-0.2
536
Normal
-0.2
1015
Tumor
-0.2
785
Tumor
-0.2
953
Tumor
-0.2
141
Tumor
-0.2
492
Normal
-0.2
411
Tumor
-0.3
191
Tumor
-0.3
715
Tumor
-0.3
913
Tumor
-0.3
883
Tumor
-0.3
857
Tumor
-0.4
741
Tumor
-0.4
957
Tumor
-0.4
553
Tumor
-0.4
195
Tumor
-0.4
867
Tumor
-0.4
745
Tumor
-0.4
221
Tumor
-0.4
471
Tumor
-0.5
461
Tumor
-0.5
923
Tumor
-0.5
483
Tumor
-0.5
823
Tumor
-0.5
413
Tumor
-0.5
161
Tumor
-0.5
443
Tumor
-0.5
537
Tumor
-0.5
921
Tumor
-0.6
357
Tumor
-0.6
573
Tumor
-0.6
447
Tumor
-0.6
313
Tumor
-0.6
421
Tumor
-0.6
223
Tumor
-0.6
737
Tumor
-0.6
297
Tumor
-0.6
665
Tumor
-0.6
523
Tumor
-0.6
187
Tumor
-0.7
815
Tumor
-0.7
355
Tumor
-0.7
911
Tumor
-0.7
185
Tumor
-0.7
535
Tumor
-0.7
383
Tumor
-0.7
525
Tumor
-0.7
491
Tumor
-0.7
814
Normal
-0.8
125
Tumor
-0.8
533
Tumor
-0.8
171
Tumor
-0.8
943
Tumor
-0.8
331
Tumor
-0.9
517
Tumor
-0.9
1013
Tumor
-0.9
467
Tumor
-0.9
427
Tumor
-0.9
257
Tumor
-0.9
877
Tumor
-0.9
425
Tumor
-0.9
271
Tumor
-0.9
635
Tumor
-0.9
123
Tumor
-0.9
617
Tumor
-0.9
451
Tumor
-1.0
663
Tumor
-1.0
213
Tumor
-1.0
863
Tumor
-1.0
445
Tumor
-1.0
977
Tumor
-1.0
277
Tumor
-1.0
147
Tumor
-1.0
975
Tumor
-1.0
455
Tumor
-1.0
671
Tumor
-1.0
881
Tumor
-1.0
497
Tumor
-1.0
697
Tumor
-1.0
473
Tumor
-1.1
817
Tumor
-1.1
285
Tumor
-1.1
367
Tumor
-1.1
135
Tumor
-1.1
493
Tumor
-1.1
963
Tumor
-1.1
743
Tumor
-1.1
861
Tumor
-1.1
813
Tumor
-1.1
865
Tumor
-1.1
685
Tumor
-1.1
527
Tumor
-1.2
395
Tumor
-1.2
387
Tumor
-1.2
951
Tumor
-1.2
1021
Tumor
-1.2
463
Tumor
-1.2
545
Tumor
-1.2
391
Tumor
-1.2
567
Tumor
-1.3
343
Tumor
-1.3
385
Tumor
-1.3
311
Tumor
-1.3
231
Tumor
-1.3
131
Tumor
-1.3
917
Tumor
-1.4
983
Tumor
-1.4
965
Tumor
-1.4
375
Tumor
-1.4
724
Normal
-1.5
351
Tumor
-1.5
283
Tumor
-1.7
661
Tumor
-1.9
211
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
