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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 35.1
1984
Male, age 76, both hemispheres
49.7
2301
Female, age 85, both hemispheres
34.6
2188
Female, age 91, both hemispheres
31.7
2090
Male, age 80, both hemispheres
24.4
Dorsal cochlear nucleus nTPM: 26.4
2058
Male, age 76, both hemispheres
33.8
2370
Male, age 61, both hemispheres
32.3
2187
Female, age 91, both hemispheres
31.1
2378
Male, age 80, both hemispheres
18.7
2802
Male, age 74, right hemisphere
16.0
Dorsal tegmental nucleus nTPM: 31.7
2358
Male, age 61, both hemispheres
33.0
2326
Male, age 74, both hemispheres
32.0
2083
Male, age 80, both hemispheres
31.4
1936
Male, age 76, left hemisphere
30.4
Dorsolateral tegmental area nTPM: 27.0
2141
Male, age 76, both hemispheres
37.5
2654
Male, age 80, both hemispheres
30.2
2751
Female, age 85, both hemispheres
27.9
2360
Male, age 74, both hemispheres
22.2
2337
Male, age 61, both hemispheres
17.4
Kolliker-Fuse nucleus nTPM: 29.6
2793
Female, age 91, left hemisphere
33.8
2163
Male, age 80, both hemispheres
30.4
2315
Male, age 76, right hemisphere
24.5
Lateral lemniscal nuclei nTPM: 46.8
2169
Male, age 76, both hemispheres
54.0
2453
Male, age 74, right hemisphere
47.7
2036
Male, age 80, both hemispheres
47.2
2320
Female, age 91, left hemisphere
44.1
2746
Female, age 85, left hemisphere
41.1
Lateral parabrachial nucleus nTPM: 31.6
2139
Female, age 85, right hemisphere
43.5
2790
Male, age 61, both hemispheres
32.7
2013
Male, age 80, both hemispheres
31.7
2792
Male, age 76, both hemispheres
18.5
Lateral vestibular nucleus nTPM: 27.2
2184
Male, age 76, both hemispheres
28.3
2311
Male, age 80, both hemispheres
26.2
Locus coeruleus nTPM: 42.2
2014
Male, age 55, unknown
48.8
2788
Male, age 74, unknown
48.3
2720
Male, age 74, both hemispheres
43.6
2162
Male, age 80, both hemispheres
41.8
1980
Male, age 76, both hemispheres
38.3
2123
Female, age 91, both hemispheres
37.5
2317
Female, age 72, unknown
37.1
Medial parabrachial nucleus nTPM: 35.1
2463
Female, age 85, right hemisphere
42.7
2156
Male, age 61, both hemispheres
35.0
2786
Male, age 76, both hemispheres
34.6
2854
Male, age 80, both hemispheres
33.7
2170
Female, age 91, both hemispheres
29.6
Medial periolivary nuclei nTPM: 44.0
2063
Male, age 76, both hemispheres
57.5
2171
Female, age 85, both hemispheres
56.3
2458
Female, age 91, both hemispheres
39.1
2791
Male, age 74, right hemisphere
34.5
2081
Male, age 80, both hemispheres
32.9
Motor facial nucleus nTPM: 46.1
2327
Male, age 80, both hemispheres
65.5
2062
Male, age 76, both hemispheres
58.9
2697
Female, age 85, both hemispheres
42.6
2365
Male, age 74, right hemisphere
41.1
2795
Female, age 91, both hemispheres
37.6
2126
Male, age 61, both hemispheres
31.2
Motor trigeminal nucleus nTPM: 37.5
2079
Male, age 80, both hemispheres
48.7
2335
Male, age 61, both hemispheres
38.7
2321
Female, age 91, both hemispheres
34.5
2309
Male, age 76, both hemispheres
33.8
2560
Male, age 74, both hemispheres
31.8
Nuclei of the trapezoid body nTPM: 52.0
2735
Female, age 85, both hemispheres
64.1
1983
Male, age 76, both hemispheres
52.6
2159
Male, age 61, both hemispheres
52.5
2368
Female, age 91, both hemispheres
46.6
2166
Male, age 80, both hemispheres
44.2
Nucleus raphe magnus nTPM: 50.5
2172
Female, age 85, both hemispheres
64.5
2455
Male, age 74, both hemispheres
58.3
2160
Male, age 61, both hemispheres
54.3
2328
Male, age 80, both hemispheres
49.5
2459
Female, age 91, both hemispheres
40.8
2051
Male, age 76, both hemispheres
35.5
Paramedian reticular nucleus nTPM: 36.2
2313
Male, age 61, both hemispheres
45.5
2050
Female, age 85, both hemispheres
40.6
2057
Male, age 80, both hemispheres
29.7
2052
Male, age 76, both hemispheres
29.1
Pedunculopontine tegmental nucleus nTPM: 37.6
1921
Female, age 85, both hemispheres
48.7
2334
Male, age 80, both hemispheres
33.4
2338
Male, age 61, both hemispheres
30.5
Pontine nuclei nTPM: 41.6
2787
Female, age 85, both hemispheres
60.5
1968
Male, age 76, left hemisphere
45.3
2727
Male, age 61, right hemisphere
45.0
1863
Male, age 55, unknown
43.7
2109
Female, age 72, unknown
38.7
2454
Male, age 74, left hemisphere
34.0
2115
Male, age 80, left hemisphere
33.5
2319
Female, age 91, both hemispheres
32.4
Pontine raphe nucleus nTPM: 48.6
2122
Female, age 85, midline
53.6
2853
Male, age 76, midline
43.5
Posteroventral cochlear nucleus nTPM: 29.3
2752
Female, age 85, both hemispheres
44.3
2070
Male, age 76, both hemispheres
34.3
2371
Male, age 61, both hemispheres
27.7
2341
Male, age 80, both hemispheres
21.1
2135
Female, age 91, both hemispheres
19.4
Principal sensory trigeminal nucleus nTPM: 41.7
2158
Male, age 61, both hemispheres
52.2
2008
Male, age 80, left hemisphere
51.1
2367
Female, age 91, left hemisphere
36.5
2324
Male, age 76, both hemispheres
27.1
Reticular pontine nucleus, caudal nTPM: 40.7
2332
Male, age 80, right hemisphere
53.6
2092
Male, age 76, both hemispheres
43.7
2457
Female, age 91, both hemispheres
34.3
2559
Male, age 74, both hemispheres
31.1
Reticular pontine nucleus, oral nTPM: 35.7
2012
Female, age 85, both hemispheres
41.8
2366
Female, age 91, both hemispheres
39.7
2167
Male, age 76, both hemispheres
34.8
2361
Male, age 74, both hemispheres
34.6
1939
Male, age 80, both hemispheres
27.6
Reticulotegmental nucleus nTPM: 36.6
2325
Male, age 76, both hemispheres
46.0
2322
Female, age 91, both hemispheres
34.9
2333
Male, age 80, both hemispheres
33.2
2452
Male, age 74, both hemispheres
32.2
Spinal trigeminal nucleus, oral nTPM: 38.8
1978
Male, age 76, both hemispheres
45.5
2737
Female, age 85, both hemispheres
43.0
2164
Male, age 80, both hemispheres
28.0
Subcoeruleus area nTPM: 38.8
2089
Male, age 76, left hemisphere
47.7
1958
Male, age 80, both hemispheres
41.5
2323
Female, age 91, left hemisphere
41.4
2451
Male, age 74, both hemispheres
38.6
2369
Female, age 85, left hemisphere
24.9
Superior olive nTPM: 45.2
1875
Female, age 85, both hemispheres
56.3
2329
Male, age 80, right hemisphere
46.8
2020
Male, age 76, both hemispheres
44.8
2561
Female, age 91, both hemispheres
42.3
2364
Male, age 74, right hemisphere
35.8
Ventral periolivary nuclei nTPM: 52.3
2130
Female, age 85, both hemispheres
58.9
2794
Female, age 91, left hemisphere
54.9
2165
Male, age 80, both hemispheres
52.7
2023
Male, age 76, both hemispheres
42.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 38.3
2449
Male, age 74, both hemispheres
46.9
1959
Male, age 76, both hemispheres
44.8
2161
Male, age 80, both hemispheres
42.3
2456
Female, age 91, both hemispheres
32.9
2840
Female, age 85, both hemispheres
32.4
2359
Male, age 61, both hemispheres
30.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.5
Pig sample
Sample description
nTPM
Pons nTPM: 92.5
Samples: 4
Max nTPM: 138.8
Min nTPM: 71.5
Sample A
Female
138.8
Sample B
Female
77.0
Sample C
Male
82.8
Sample D
Male
71.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
