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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
287.0
nTPM
FANTOM5:
300.5
Scaled Tags Per Million
Pig:
739.7
nTPM
Allen mouse:
4.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
287.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 226.7
1984
Male, age 76, both hemispheres
259.0
2090
Male, age 80, both hemispheres
246.8
2188
Female, age 91, both hemispheres
217.1
2301
Female, age 85, both hemispheres
183.8
Dorsal cochlear nucleus nTPM: 267.2
2802
Male, age 74, right hemisphere
342.0
2058
Male, age 76, both hemispheres
267.5
2370
Male, age 61, both hemispheres
264.7
2187
Female, age 91, both hemispheres
258.9
2378
Male, age 80, both hemispheres
202.9
Dorsal tegmental nucleus nTPM: 254.4
2083
Male, age 80, both hemispheres
312.9
2326
Male, age 74, both hemispheres
267.5
1936
Male, age 76, left hemisphere
236.8
2358
Male, age 61, both hemispheres
200.4
Dorsolateral tegmental area nTPM: 277.1
2751
Female, age 85, both hemispheres
331.0
2654
Male, age 80, both hemispheres
324.8
2360
Male, age 74, both hemispheres
248.2
2337
Male, age 61, both hemispheres
242.3
2141
Male, age 76, both hemispheres
239.4
Kolliker-Fuse nucleus nTPM: 273.6
2163
Male, age 80, both hemispheres
313.8
2315
Male, age 76, right hemisphere
293.5
2793
Female, age 91, left hemisphere
213.4
Lateral lemniscal nuclei nTPM: 231.4
2036
Male, age 80, both hemispheres
265.9
2169
Male, age 76, both hemispheres
256.5
2746
Female, age 85, left hemisphere
249.2
2453
Male, age 74, right hemisphere
214.3
2320
Female, age 91, left hemisphere
171.1
Lateral parabrachial nucleus nTPM: 269.0
2139
Female, age 85, right hemisphere
297.0
2013
Male, age 80, both hemispheres
268.3
2790
Male, age 61, both hemispheres
266.7
2792
Male, age 76, both hemispheres
244.0
Lateral vestibular nucleus nTPM: 260.1
2184
Male, age 76, both hemispheres
274.4
2311
Male, age 80, both hemispheres
245.7
Locus coeruleus nTPM: 282.4
2123
Female, age 91, both hemispheres
370.8
2317
Female, age 72, unknown
313.1
2014
Male, age 55, unknown
290.7
1980
Male, age 76, both hemispheres
287.3
2162
Male, age 80, both hemispheres
253.7
2720
Male, age 74, both hemispheres
247.9
2788
Male, age 74, unknown
213.5
Medial parabrachial nucleus nTPM: 275.3
2170
Female, age 91, both hemispheres
349.8
2463
Female, age 85, right hemisphere
299.3
2156
Male, age 61, both hemispheres
257.4
2854
Male, age 80, both hemispheres
235.7
2786
Male, age 76, both hemispheres
234.5
Medial periolivary nuclei nTPM: 230.9
2063
Male, age 76, both hemispheres
283.8
2171
Female, age 85, both hemispheres
264.7
2791
Male, age 74, right hemisphere
264.0
2081
Male, age 80, both hemispheres
183.2
2458
Female, age 91, both hemispheres
158.7
Motor facial nucleus nTPM: 229.8
2062
Male, age 76, both hemispheres
315.4
2795
Female, age 91, both hemispheres
244.5
2126
Male, age 61, both hemispheres
238.1
2365
Male, age 74, right hemisphere
229.8
2327
Male, age 80, both hemispheres
177.2
2697
Female, age 85, both hemispheres
173.6
Motor trigeminal nucleus nTPM: 235.8
2309
Male, age 76, both hemispheres
267.8
2335
Male, age 61, both hemispheres
259.0
2560
Male, age 74, both hemispheres
255.4
2079
Male, age 80, both hemispheres
226.1
2321
Female, age 91, both hemispheres
170.8
Nuclei of the trapezoid body nTPM: 250.6
1983
Male, age 76, both hemispheres
311.6
2159
Male, age 61, both hemispheres
283.8
2735
Female, age 85, both hemispheres
278.2
2166
Male, age 80, both hemispheres
195.6
2368
Female, age 91, both hemispheres
184.0
Nucleus raphe magnus nTPM: 234.3
2160
Male, age 61, both hemispheres
323.8
2172
Female, age 85, both hemispheres
240.2
2051
Male, age 76, both hemispheres
237.6
2455
Male, age 74, both hemispheres
237.0
2328
Male, age 80, both hemispheres
192.9
2459
Female, age 91, both hemispheres
174.1
Paramedian reticular nucleus nTPM: 272.2
2050
Female, age 85, both hemispheres
316.9
2057
Male, age 80, both hemispheres
298.8
2313
Male, age 61, both hemispheres
267.8
2052
Male, age 76, both hemispheres
205.5
Pedunculopontine tegmental nucleus nTPM: 272.5
1921
Female, age 85, both hemispheres
297.5
2334
Male, age 80, both hemispheres
289.5
2338
Male, age 61, both hemispheres
230.4
Pontine nuclei nTPM: 280.3
1863
Male, age 55, unknown
380.4
2787
Female, age 85, both hemispheres
334.2
2727
Male, age 61, right hemisphere
318.7
2109
Female, age 72, unknown
298.6
1968
Male, age 76, left hemisphere
272.8
2454
Male, age 74, left hemisphere
223.1
2319
Female, age 91, both hemispheres
218.1
2115
Male, age 80, left hemisphere
196.3
Pontine raphe nucleus nTPM: 287.0
2853
Male, age 76, midline
290.4
2122
Female, age 85, midline
283.7
Posteroventral cochlear nucleus nTPM: 263.6
2752
Female, age 85, both hemispheres
303.1
2371
Male, age 61, both hemispheres
274.9
2070
Male, age 76, both hemispheres
259.7
2341
Male, age 80, both hemispheres
249.7
2135
Female, age 91, both hemispheres
230.8
Principal sensory trigeminal nucleus nTPM: 239.6
2158
Male, age 61, both hemispheres
302.3
2324
Male, age 76, both hemispheres
247.3
2008
Male, age 80, left hemisphere
232.0
2367
Female, age 91, left hemisphere
176.8
Reticular pontine nucleus, caudal nTPM: 222.7
2092
Male, age 76, both hemispheres
284.8
2559
Male, age 74, both hemispheres
250.5
2332
Male, age 80, right hemisphere
193.2
2457
Female, age 91, both hemispheres
162.1
Reticular pontine nucleus, oral nTPM: 251.9
1939
Male, age 80, both hemispheres
315.6
2012
Female, age 85, both hemispheres
288.3
2167
Male, age 76, both hemispheres
271.9
2361
Male, age 74, both hemispheres
195.3
2366
Female, age 91, both hemispheres
188.4
Reticulotegmental nucleus nTPM: 244.1
2452
Male, age 74, both hemispheres
280.6
2325
Male, age 76, both hemispheres
245.7
2333
Male, age 80, both hemispheres
235.3
2322
Female, age 91, both hemispheres
214.6
Spinal trigeminal nucleus, oral nTPM: 266.8
2737
Female, age 85, both hemispheres
318.7
2164
Male, age 80, both hemispheres
250.2
1978
Male, age 76, both hemispheres
231.7
Subcoeruleus area nTPM: 278.3
2323
Female, age 91, left hemisphere
304.0
2369
Female, age 85, left hemisphere
298.6
2451
Male, age 74, both hemispheres
293.4
1958
Male, age 80, both hemispheres
279.4
2089
Male, age 76, left hemisphere
216.1
Superior olive nTPM: 216.1
1875
Female, age 85, both hemispheres
266.9
2020
Male, age 76, both hemispheres
245.6
2364
Male, age 74, right hemisphere
218.2
2329
Male, age 80, right hemisphere
179.1
2561
Female, age 91, both hemispheres
170.7
Ventral periolivary nuclei nTPM: 223.5
2023
Male, age 76, both hemispheres
257.7
2165
Male, age 80, both hemispheres
242.0
2130
Female, age 85, both hemispheres
209.2
2794
Female, age 91, left hemisphere
184.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 226.3
2359
Male, age 61, both hemispheres
253.7
2840
Female, age 85, both hemispheres
248.7
1959
Male, age 76, both hemispheres
233.7
2161
Male, age 80, both hemispheres
217.0
2449
Male, age 74, both hemispheres
208.2
2456
Female, age 91, both hemispheres
196.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
739.7
Pig sample
Sample description
nTPM
Pons nTPM: 739.7
Samples: 4
Max nTPM: 925.6
Min nTPM: 488.0
Sample A
Female
925.6
Sample B
Female
488.0
Sample C
Male
731.2
Sample D
Male
813.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
