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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZBTB8OS is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
68.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
62.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
61.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
53.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
51.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
49.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
48.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
48.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
46.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
46.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
45.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
45.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
44.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
44.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
43.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
41.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
40.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
39.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
37.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
37.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
37.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
36.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
35.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
35.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
33.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
32.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
27.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
26.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZBTB8OS is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.6
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
76.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
71.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
61.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
56.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
55.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
54.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
52.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
50.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
46.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
44.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
39.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
37.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
36.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
31.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1021
Tumor
1.6
571
Tumor
1.4
925
Tumor
1.3
745
Tumor
1.2
865
Tumor
1.1
387
Tumor
1.0
777
Tumor
1.0
425
Tumor
0.9
1013
Tumor
0.8
223
Tumor
0.7
481
Tumor
0.7
724
Normal
0.7
1027
Tumor
0.7
515
Tumor
0.7
883
Tumor
0.6
525
Tumor
0.6
615
Tumor
0.6
357
Tumor
0.6
537
Tumor
0.6
685
Tumor
0.6
663
Tumor
0.6
483
Tumor
0.6
741
Tumor
0.6
527
Tumor
0.5
727
Tumor
0.5
911
Tumor
0.5
573
Tumor
0.5
171
Tumor
0.5
951
Tumor
0.5
395
Tumor
0.5
431
Tumor
0.5
567
Tumor
0.4
723
Tumor
0.4
443
Tumor
0.4
563
Tumor
0.4
313
Tumor
0.4
433
Tumor
0.4
635
Tumor
0.4
473
Tumor
0.4
1015
Tumor
0.4
327
Tumor
0.4
953
Tumor
0.4
728
Normal
0.3
737
Tumor
0.3
923
Tumor
0.3
943
Tumor
0.3
862
Normal
0.3
257
Tumor
0.3
742
Normal
0.3
785
Tumor
0.3
393
Tumor
0.3
356
Normal
0.3
755
Tumor
0.3
445
Tumor
0.3
147
Tumor
0.3
283
Tumor
0.3
482
Normal
0.3
861
Tumor
0.3
863
Tumor
0.3
882
Normal
0.3
415
Tumor
0.3
484
Normal
0.3
494
Normal
0.3
493
Tumor
0.2
123
Tumor
0.2
451
Tumor
0.2
558
Normal
0.2
436
Normal
0.2
125
Tumor
0.2
488
Normal
0.2
533
Tumor
0.2
1026
Normal
0.2
866
Normal
0.2
881
Tumor
0.2
884
Normal
0.2
786
Normal
0.2
697
Tumor
0.2
696
Normal
0.2
448
Normal
0.2
277
Tumor
0.2
432
Normal
0.2
355
Tumor
0.2
353
Tumor
0.2
472
Normal
0.2
915
Tumor
0.2
1022
Normal
0.2
944
Normal
0.2
743
Tumor
0.2
195
Tumor
0.2
518
Normal
0.2
434
Normal
0.2
851
Tumor
0.2
627
Tumor
0.2
517
Tumor
0.2
716
Normal
0.2
435
Tumor
0.2
924
Normal
0.1
965
Tumor
0.1
516
Normal
0.1
926
Normal
0.1
112
Tumor
0.1
261
Tumor
0.1
185
Tumor
0.1
491
Tumor
0.1
497
Tumor
0.1
738
Normal
0.1
756
Normal
0.1
922
Normal
0.1
1042
Normal
0.1
864
Normal
0.1
912
Normal
0.1
964
Normal
0.1
661
Tumor
0.1
212
Normal
0.1
977
Tumor
0.1
364
Normal
0.1
877
Tumor
0.1
461
Tumor
0.1
868
Normal
0.1
137
Tumor
0.1
463
Tumor
0.1
477
Tumor
0.1
474
Normal
0.1
328
Normal
0.1
465
Tumor
0.1
1044
Normal
0.1
148
Normal
0.1
967
Tumor
0.1
878
Normal
0.1
363
Tumor
0.1
1014
Normal
0.1
695
Tumor
0.1
921
Tumor
0.1
196
Normal
0.1
557
Tumor
0.1
145
Tumor
0.1
916
Normal
0.1
746
Normal
0.1
978
Normal
0.1
231
Tumor
0.1
478
Normal
0.1
852
Normal
0.1
698
Normal
0.1
1041
Tumor
0.1
456
Normal
0.0
816
Normal
0.0
938
Normal
0.0
867
Tumor
0.0
546
Normal
0.0
446
Normal
0.0
1016
Normal
0.0
455
Tumor
0.0
968
Normal
0.0
722
Normal
0.0
341
Tumor
0.0
824
Normal
0.0
132
Normal
0.0
513
Tumor
0.0
424
Normal
0.0
874
Normal
0.0
956
Normal
0.0
162
Normal
0.0
937
Tumor
0.0
286
Normal
0.0
858
Normal
0.0
224
Normal
0.0
662
Normal
0.0
514
Normal
0.0
128
Normal
0.0
873
Tumor
0.0
172
Normal
0.0
391
Tumor
0.0
818
Normal
0.0
564
Normal
0.0
952
Normal
0.0
913
Tumor
0.0
141
Tumor
0.0
572
Normal
0.0
568
Normal
0.0
714
Normal
0.0
1032
Normal
0.0
452
Normal
0.0
416
Normal
0.0
966
Normal
0.0
487
Tumor
0.0
217
Tumor
0.0
1043
Tumor
0.0
375
Tumor
0.0
211
Tumor
0.0
462
Normal
0.0
534
Normal
0.0
616
Normal
0.0
228
Normal
0.0
528
Normal
0.0
412
Normal
0.0
984
Normal
0.0
492
Normal
-0.1
1046
Normal
-0.1
981
Tumor
-0.1
647
Tumor
-0.1
686
Normal
-0.1
664
Normal
-0.1
213
Tumor
-0.1
142
Normal
-0.1
815
Tumor
-0.1
982
Normal
-0.1
963
Tumor
-0.1
186
Normal
-0.1
648
Normal
-0.1
367
Tumor
-0.1
262
Normal
-0.1
411
Tumor
-0.1
536
Normal
-0.1
498
Normal
-0.1
665
Tumor
-0.1
618
Normal
-0.1
976
Normal
-0.1
955
Tumor
-0.1
535
Tumor
-0.1
444
Normal
-0.1
857
Tumor
-0.1
918
Normal
-0.1
917
Tumor
-0.1
426
Normal
-0.1
312
Normal
-0.1
113
Tumor
-0.1
778
Normal
-0.1
524
Normal
-0.2
284
Normal
-0.2
466
Normal
-0.2
413
Tumor
-0.2
111
Normal
-0.2
954
Normal
-0.2
126
Normal
-0.2
342
Normal
-0.2
423
Tumor
-0.2
642
Normal
-0.2
574
Normal
-0.2
823
Tumor
-0.2
526
Normal
-0.2
914
Normal
-0.2
135
Tumor
-0.2
428
Normal
-0.2
554
Normal
-0.2
671
Tumor
-0.2
314
Normal
-0.2
628
Normal
-0.2
464
Normal
-0.2
958
Normal
-0.2
358
Normal
-0.2
221
Tumor
-0.2
258
Normal
-0.2
124
Normal
-0.2
311
Tumor
-0.2
538
Normal
-0.2
636
Normal
-0.2
447
Tumor
-0.2
138
Normal
-0.2
222
Normal
-0.3
365
Tumor
-0.3
114
Normal
-0.3
414
Normal
-0.3
721
Tumor
-0.3
1031
Tumor
-0.3
272
Normal
-0.3
278
Normal
-0.3
666
Normal
-0.3
672
Normal
-0.3
214
Normal
-0.3
386
Normal
-0.3
1045
Tumor
-0.3
366
Normal
-0.3
161
Tumor
-0.3
385
Tumor
-0.3
814
Normal
-0.3
1028
Normal
-0.3
468
Normal
-0.3
715
Tumor
-0.3
188
Normal
-0.3
422
Normal
-0.3
298
Normal
-0.3
471
Tumor
-0.3
523
Tumor
-0.3
232
Normal
-0.3
713
Tumor
-0.3
136
Normal
-0.3
427
Tumor
-0.4
218
Normal
-0.4
331
Tumor
-0.4
268
Normal
-0.4
394
Normal
-0.4
617
Tumor
-0.4
396
Normal
-0.4
368
Normal
-0.4
192
Normal
-0.4
127
Tumor
-0.4
744
Normal
-0.4
187
Tumor
-0.4
227
Tumor
-0.4
332
Normal
-0.4
271
Tumor
-0.4
553
Tumor
-0.4
354
Normal
-0.4
352
Normal
-0.4
817
Tumor
-0.4
146
Normal
-0.4
285
Tumor
-0.5
297
Tumor
-0.5
267
Tumor
-0.5
344
Normal
-0.5
383
Tumor
-0.5
421
Tumor
-0.5
362
Normal
-0.5
361
Tumor
-0.5
983
Tumor
-0.5
388
Normal
-0.6
191
Tumor
-0.6
131
Tumor
-0.6
392
Normal
-0.6
376
Normal
-0.6
975
Tumor
-0.6
957
Tumor
-0.6
813
Tumor
-0.6
641
Tumor
-0.6
467
Tumor
-0.7
384
Normal
-0.7
351
Tumor
-0.7
545
Tumor
-0.7
343
Tumor
-0.8
1025
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
