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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPX2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
477.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3619.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3132.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2474.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2348.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2319.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2156.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2053.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1964.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1944.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1906.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1870.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1840.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1836.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1808.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1796.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1773.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1749.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1718.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1710.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1704.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1637.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1616.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1609.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1598.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1587.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1528.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1514.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1506.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1467.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1463.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1453.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1411.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1362.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1343.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1316.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1300.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1279.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1265.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1244.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1241.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1236.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1193.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1187.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1171.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1161.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1151.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1145.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1135.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1115.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1109.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1087.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1078.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1051.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1043.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1042.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1035.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1022.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1003.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
996.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
989.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
986.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
984.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
965.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
961.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
953.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
943.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
942.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
936.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
935.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
932.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
917.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
896.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
877.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
872.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
854.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
848.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
846.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
841.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
824.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
808.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
790.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
789.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
767.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
762.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
760.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
750.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
746.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
742.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
735.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
701.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
697.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
692.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
673.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
672.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
665.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
647.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
635.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
634.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
634.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
619.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
609.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
592.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
576.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
569.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
566.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
561.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
555.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
553.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
551.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
540.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
536.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
529.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
524.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
506.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
497.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
480.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
472.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
469.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
466.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
466.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
462.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
457.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
453.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
453.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
442.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
441.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
438.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
425.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
422.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
414.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
414.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
407.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
403.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
393.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
393.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
386.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
385.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
379.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
367.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
364.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
362.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
358.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
356.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
354.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
351.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
348.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
347.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
344.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
341.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
334.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
329.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
326.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
323.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
319.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
314.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
313.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
311.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
310.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
310.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
308.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
307.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
295.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
294.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
292.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
290.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
287.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
286.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
282.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
281.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
277.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
276.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
274.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
274.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
273.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
271.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
270.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
269.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
269.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
265.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
260.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
252.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
250.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
245.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
245.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
242.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
239.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
238.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
237.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
237.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
233.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
227.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
226.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
224.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
221.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
215.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
212.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
211.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
207.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
207.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
204.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
202.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
200.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
199.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
198.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
194.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
191.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
185.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
185.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
182.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
182.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
182.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
181.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
180.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
180.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
179.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
174.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
173.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
168.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
161.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
156.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
155.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
153.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
153.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
152.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
151.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
150.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
149.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
147.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
147.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
143.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
140.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
139.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
138.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
137.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
132.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
130.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
124.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
124.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
123.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
122.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
122.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
121.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
120.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
120.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
113.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
110.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
109.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
109.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
107.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
106.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
104.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
104.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
103.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
103.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
102.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
101.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
101.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
99.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
95.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
91.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
89.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
89.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
89.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
89.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
88.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
87.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
87.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
86.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
83.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
80.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
78.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
76.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
75.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
75.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
73.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
72.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
72.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
70.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
68.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
67.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
61.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
60.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
60.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
59.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
59.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
58.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
58.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
53.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
48.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
48.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
43.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
43.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
39.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPX2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
378.5
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
2434.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2079.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
1935.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
1917.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1697.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
1606.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
1590.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
1534.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
1529.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
1507.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
1462.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
1366.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1360.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
1176.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1166.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
1149.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
1149.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
1097.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
1076.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
1066.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
1024.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1011.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
994.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
959.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
918.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
903.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
898.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
854.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
846.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
820.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
817.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
806.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
789.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
785.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
769.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
732.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
732.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
730.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
705.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
698.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
696.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
661.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
649.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
646.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
641.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
633.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
621.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
614.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
606.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
601.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
569.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
563.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
562.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
560.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
554.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
553.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
542.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
540.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
538.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
525.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
525.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
511.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
503.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
487.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
481.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
480.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
480.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
468.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
455.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
454.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
446.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
430.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
425.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
425.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
423.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
421.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
416.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
411.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
406.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
375.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
373.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
363.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
362.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
359.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
355.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
354.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
353.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
346.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
345.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
327.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
318.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
316.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
315.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
307.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
306.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
292.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
287.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
285.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
284.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
283.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
270.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
265.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
263.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
256.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
255.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
251.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
250.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
246.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
244.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
232.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
226.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
225.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
223.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
223.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
220.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
217.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
207.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
207.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
199.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
197.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
196.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
195.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
195.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
192.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
188.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
188.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
183.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
170.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
162.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
159.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
158.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
156.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
156.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
154.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
153.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
146.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
146.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
142.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
140.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
138.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
137.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
137.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
136.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
135.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
133.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
133.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
128.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
126.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
125.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
125.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
124.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
121.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
121.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
118.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
117.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
113.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
112.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
112.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
109.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
107.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
104.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
102.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
93.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
92.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
84.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
81.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
80.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
79.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
79.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
78.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
77.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
71.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
65.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
65.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
65.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
61.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
59.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
56.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
55.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
55.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
55.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
53.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
53.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
52.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
52.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
51.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
49.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
47.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
45.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
41.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
40.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
25.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
2.7
981
Tumor
2.1
395
Tumor
1.9
724
Normal
1.8
1015
Tumor
1.7
975
Tumor
1.5
558
Normal
1.4
267
Tumor
1.4
696
Normal
1.2
191
Tumor
1.2
477
Tumor
1.1
212
Normal
1.1
745
Tumor
1.1
526
Normal
1.1
857
Tumor
1.1
721
Tumor
1.0
617
Tumor
1.0
913
Tumor
1.0
533
Tumor
0.9
286
Normal
0.9
817
Tumor
0.9
127
Tumor
0.9
525
Tumor
0.9
918
Normal
0.8
944
Normal
0.8
568
Normal
0.8
284
Normal
0.8
131
Tumor
0.8
642
Normal
0.8
353
Tumor
0.8
866
Normal
0.8
492
Normal
0.8
1028
Normal
0.7
474
Normal
0.7
567
Tumor
0.7
922
Normal
0.7
1016
Normal
0.7
514
Normal
0.7
917
Tumor
0.7
662
Normal
0.7
145
Tumor
0.7
778
Normal
0.7
414
Normal
0.7
573
Tumor
0.7
471
Tumor
0.7
926
Normal
0.6
976
Normal
0.6
564
Normal
0.6
427
Tumor
0.6
574
Normal
0.6
518
Normal
0.6
636
Normal
0.6
925
Tumor
0.6
195
Tumor
0.6
1045
Tumor
0.6
396
Normal
0.6
665
Tumor
0.6
686
Normal
0.6
916
Normal
0.5
881
Tumor
0.5
392
Normal
0.5
952
Normal
0.5
468
Normal
0.5
616
Normal
0.5
1044
Normal
0.5
911
Tumor
0.4
524
Normal
0.4
376
Normal
0.4
228
Normal
0.4
865
Tumor
0.4
852
Normal
0.4
361
Tumor
0.4
755
Tumor
0.3
494
Normal
0.3
311
Tumor
0.3
435
Tumor
0.3
1022
Normal
0.3
444
Normal
0.3
232
Normal
0.3
816
Normal
0.3
224
Normal
0.3
138
Normal
0.3
716
Normal
0.3
126
Normal
0.2
262
Normal
0.2
135
Tumor
0.2
738
Normal
0.2
114
Normal
0.2
963
Tumor
0.2
968
Normal
0.2
394
Normal
0.2
447
Tumor
0.2
278
Normal
0.2
448
Normal
0.2
864
Normal
0.2
393
Tumor
0.2
982
Normal
0.2
666
Normal
0.2
528
Normal
0.2
491
Tumor
0.2
188
Normal
0.2
672
Normal
0.2
956
Normal
0.1
1021
Tumor
0.1
954
Normal
0.1
1041
Tumor
0.1
978
Normal
0.1
756
Normal
0.1
327
Tumor
0.1
218
Normal
0.1
884
Normal
0.1
861
Tumor
0.1
424
Normal
0.1
984
Normal
0.1
483
Tumor
0.1
352
Normal
0.1
111
Normal
0.1
148
Normal
0.1
124
Normal
0.1
128
Normal
0.1
1042
Normal
0.0
648
Normal
0.0
722
Normal
0.0
362
Normal
0.0
413
Tumor
0.0
685
Tumor
0.0
368
Normal
0.0
466
Normal
0.0
546
Normal
0.0
312
Normal
0.0
136
Normal
0.0
538
Normal
0.0
723
Tumor
0.0
433
Tumor
0.0
187
Tumor
0.0
223
Tumor
0.0
823
Tumor
0.0
867
Tumor
-0.1
1026
Normal
-0.1
554
Normal
-0.1
741
Tumor
-0.1
862
Normal
-0.1
958
Normal
-0.1
386
Normal
-0.1
728
Normal
-0.1
214
Normal
-0.1
1014
Normal
-0.1
488
Normal
-0.1
498
Normal
-0.1
478
Normal
-0.1
536
Normal
-0.1
356
Normal
-0.1
258
Normal
-0.1
786
Normal
-0.2
874
Normal
-0.2
868
Normal
-0.2
272
Normal
-0.2
714
Normal
-0.2
426
Normal
-0.2
516
Normal
-0.2
422
Normal
-0.2
572
Normal
-0.2
482
Normal
-0.2
354
Normal
-0.2
391
Tumor
-0.2
966
Normal
-0.2
358
Normal
-0.2
858
Normal
-0.2
328
Normal
-0.2
618
Normal
-0.2
914
Normal
-0.2
563
Tumor
-0.2
332
Normal
-0.2
384
Normal
-0.2
344
Normal
-0.3
937
Tumor
-0.3
432
Normal
-0.3
493
Tumor
-0.3
467
Tumor
-0.3
443
Tumor
-0.3
527
Tumor
-0.3
364
Normal
-0.3
824
Normal
-0.3
271
Tumor
-0.3
1046
Normal
-0.3
231
Tumor
-0.3
1043
Tumor
-0.3
873
Tumor
-0.3
142
Normal
-0.4
664
Normal
-0.4
924
Normal
-0.4
185
Tumor
-0.4
628
Normal
-0.4
196
Normal
-0.4
446
Normal
-0.4
557
Tumor
-0.4
314
Normal
-0.4
222
Normal
-0.4
955
Tumor
-0.4
742
Normal
-0.4
147
Tumor
-0.4
473
Tumor
-0.4
436
Normal
-0.5
137
Tumor
-0.5
268
Normal
-0.5
1025
Tumor
-0.5
456
Normal
-0.5
534
Normal
-0.5
957
Tumor
-0.5
416
Normal
-0.5
423
Tumor
-0.5
698
Normal
-0.5
451
Tumor
-0.5
484
Normal
-0.5
964
Normal
-0.5
217
Tumor
-0.5
132
Normal
-0.5
192
Normal
-0.5
298
Normal
-0.6
213
Tumor
-0.6
943
Tumor
-0.6
351
Tumor
-0.6
415
Tumor
-0.6
713
Tumor
-0.6
814
Normal
-0.6
452
Normal
-0.6
1032
Normal
-0.6
472
Normal
-0.7
462
Normal
-0.7
365
Tumor
-0.7
434
Normal
-0.7
366
Normal
-0.8
877
Tumor
-0.8
671
Tumor
-0.8
412
Normal
-0.8
537
Tumor
-0.8
965
Tumor
-0.8
697
Tumor
-0.9
388
Normal
-0.9
162
Normal
-0.9
211
Tumor
-0.9
186
Normal
-0.9
146
Normal
-0.9
461
Tumor
-0.9
421
Tumor
-0.9
297
Tumor
-0.9
428
Normal
-0.9
912
Normal
-0.9
535
Tumor
-0.9
744
Normal
-0.9
938
Normal
-1.0
818
Normal
-1.0
882
Normal
-1.0
387
Tumor
-1.0
342
Normal
-1.0
341
Tumor
-1.0
445
Tumor
-1.0
1031
Tumor
-1.0
915
Tumor
-1.0
615
Tumor
-1.0
497
Tumor
-1.0
172
Normal
-1.0
221
Tumor
-1.0
715
Tumor
-1.0
746
Normal
-1.1
967
Tumor
-1.1
383
Tumor
-1.1
513
Tumor
-1.1
257
Tumor
-1.1
481
Tumor
-1.1
883
Tumor
-1.1
277
Tumor
-1.1
545
Tumor
-1.1
977
Tumor
-1.1
123
Tumor
-1.2
464
Normal
-1.2
455
Tumor
-1.2
112
Tumor
-1.2
261
Tumor
-1.2
641
Tumor
-1.3
627
Tumor
-1.3
878
Normal
-1.3
983
Tumor
-1.3
331
Tumor
-1.4
851
Tumor
-1.4
663
Tumor
-1.4
923
Tumor
-1.5
125
Tumor
-1.5
227
Tumor
-1.5
661
Tumor
-1.5
283
Tumor
-1.5
517
Tumor
-1.5
161
Tumor
-1.5
141
Tumor
-1.5
515
Tumor
-1.6
285
Tumor
-1.6
921
Tumor
-1.6
813
Tumor
-1.7
343
Tumor
-1.7
375
Tumor
-1.7
863
Tumor
-1.7
523
Tumor
-1.8
355
Tumor
-1.8
953
Tumor
-1.8
313
Tumor
-1.8
1013
Tumor
-1.8
465
Tumor
-1.8
743
Tumor
-1.8
727
Tumor
-1.9
357
Tumor
-1.9
367
Tumor
-2.0
553
Tumor
-2.0
431
Tumor
-2.0
737
Tumor
-2.0
785
Tumor
-2.0
571
Tumor
-2.0
647
Tumor
-2.1
777
Tumor
-2.1
385
Tumor
-2.2
363
Tumor
-2.2
635
Tumor
-2.3
463
Tumor
-2.3
815
Tumor
-2.3
951
Tumor
-2.3
695
Tumor
-2.4
487
Tumor
-2.4
425
Tumor
-2.5
1027
Tumor
-2.5
171
Tumor
-2.6
411
Tumor
-2.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.