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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHMP6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
66.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
65.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
51.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
50.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
50.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
49.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
44.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
43.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
42.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
42.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
39.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
31.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
31.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
28.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
24.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHMP6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.9
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
30.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
435
Tumor
1.3
741
Tumor
1.1
533
Tumor
0.9
271
Tumor
0.9
473
Tumor
0.8
123
Tumor
0.7
433
Tumor
0.7
981
Tumor
0.7
1025
Tumor
0.6
745
Tumor
0.6
171
Tumor
0.6
727
Tumor
0.6
477
Tumor
0.6
695
Tumor
0.5
685
Tumor
0.5
525
Tumor
0.5
737
Tumor
0.5
861
Tumor
0.5
423
Tumor
0.5
957
Tumor
0.5
355
Tumor
0.4
363
Tumor
0.4
513
Tumor
0.4
715
Tumor
0.4
553
Tumor
0.4
484
Normal
0.4
221
Tumor
0.3
1027
Tumor
0.3
1013
Tumor
0.3
967
Tumor
0.3
482
Normal
0.3
147
Tumor
0.3
952
Normal
0.3
867
Tumor
0.3
921
Tumor
0.3
965
Tumor
0.3
1031
Tumor
0.3
112
Tumor
0.3
472
Normal
0.3
938
Normal
0.3
1032
Normal
0.3
915
Tumor
0.2
478
Normal
0.2
351
Tumor
0.2
445
Tumor
0.2
286
Normal
0.2
127
Tumor
0.2
518
Normal
0.2
963
Tumor
0.2
361
Tumor
0.2
923
Tumor
0.2
481
Tumor
0.2
474
Normal
0.2
746
Normal
0.2
462
Normal
0.2
635
Tumor
0.2
131
Tumor
0.2
142
Normal
0.2
716
Normal
0.2
471
Tumor
0.2
911
Tumor
0.2
742
Normal
0.2
341
Tumor
0.2
698
Normal
0.2
968
Normal
0.2
464
Normal
0.2
261
Tumor
0.2
412
Normal
0.1
738
Normal
0.1
415
Tumor
0.1
977
Tumor
0.1
744
Normal
0.1
132
Normal
0.1
922
Normal
0.1
516
Normal
0.1
1046
Normal
0.1
258
Normal
0.1
1028
Normal
0.1
465
Tumor
0.1
1021
Tumor
0.1
1026
Normal
0.1
483
Tumor
0.1
723
Tumor
0.1
545
Tumor
0.1
517
Tumor
0.1
364
Normal
0.1
488
Normal
0.1
491
Tumor
0.1
958
Normal
0.1
546
Normal
0.1
724
Normal
0.1
534
Normal
0.1
877
Tumor
0.1
696
Normal
0.1
954
Normal
0.1
448
Normal
0.1
944
Normal
0.1
755
Tumor
0.1
257
Tumor
0.1
487
Tumor
0.1
926
Normal
0.1
568
Normal
0.1
514
Normal
0.1
342
Normal
0.1
964
Normal
0.1
918
Normal
0.1
195
Tumor
0.1
285
Tumor
0.1
728
Normal
0.1
227
Tumor
0.1
356
Normal
0.0
1044
Normal
0.0
647
Tumor
0.0
196
Normal
0.0
878
Normal
0.0
392
Normal
0.0
431
Tumor
0.0
526
Normal
0.0
267
Tumor
0.0
785
Tumor
0.0
466
Normal
0.0
1022
Normal
0.0
536
Normal
0.0
148
Normal
0.0
914
Normal
0.0
272
Normal
0.0
554
Normal
0.0
883
Tumor
0.0
862
Normal
0.0
136
Normal
0.0
212
Normal
0.0
493
Tumor
0.0
388
Normal
0.0
498
Normal
0.0
416
Normal
0.0
618
Normal
0.0
1014
Normal
0.0
497
Tumor
0.0
912
Normal
0.0
436
Normal
0.0
648
Normal
0.0
953
Tumor
0.0
966
Normal
0.0
976
Normal
0.0
328
Normal
0.0
686
Normal
0.0
432
Normal
0.0
664
Normal
0.0
494
Normal
0.0
228
Normal
0.0
663
Tumor
0.0
358
Normal
0.0
394
Normal
0.0
452
Normal
0.0
357
Tumor
0.0
1042
Normal
0.0
376
Normal
0.0
571
Tumor
0.0
396
Normal
0.0
865
Tumor
0.0
393
Tumor
0.0
492
Normal
0.0
224
Normal
0.0
456
Normal
0.0
778
Normal
0.0
924
Normal
0.0
636
Normal
0.0
354
Normal
0.0
277
Tumor
0.0
128
Normal
0.0
982
Normal
0.0
866
Normal
0.0
186
Normal
0.0
468
Normal
0.0
573
Tumor
0.0
916
Normal
0.0
756
Normal
0.0
524
Normal
0.0
232
Normal
0.0
882
Normal
0.0
368
Normal
0.0
443
Tumor
0.0
231
Tumor
0.0
662
Normal
0.0
137
Tumor
0.0
955
Tumor
-0.1
868
Normal
-0.1
864
Normal
-0.1
1043
Tumor
-0.1
444
Normal
-0.1
344
Normal
-0.1
222
Normal
-0.1
138
Normal
-0.1
786
Normal
-0.1
817
Tumor
-0.1
881
Tumor
-0.1
672
Normal
-0.1
527
Tumor
-0.1
353
Tumor
-0.1
572
Normal
-0.1
528
Normal
-0.1
858
Normal
-0.1
447
Tumor
-0.1
124
Normal
-0.1
777
Tumor
-0.1
824
Normal
-0.1
162
Normal
-0.1
114
Normal
-0.1
671
Tumor
-0.1
714
Normal
-0.1
1041
Tumor
-0.1
218
Normal
-0.1
956
Normal
-0.1
428
Normal
-0.1
172
Normal
-0.1
278
Normal
-0.1
422
Normal
-0.1
421
Tumor
-0.1
1015
Tumor
-0.1
414
Normal
-0.1
851
Tumor
-0.1
284
Normal
-0.1
975
Tumor
-0.1
984
Normal
-0.1
268
Normal
-0.1
574
Normal
-0.1
1016
Normal
-0.1
951
Tumor
-0.1
823
Tumor
-0.1
387
Tumor
-0.1
434
Normal
-0.1
386
Normal
-0.1
538
Normal
-0.1
446
Normal
-0.1
642
Normal
-0.1
535
Tumor
-0.1
352
Normal
-0.1
161
Tumor
-0.1
426
Normal
-0.1
818
Normal
-0.1
697
Tumor
-0.1
515
Tumor
-0.1
411
Tumor
-0.1
641
Tumor
-0.2
146
Normal
-0.2
185
Tumor
-0.2
332
Normal
-0.2
298
Normal
-0.2
873
Tumor
-0.2
463
Tumor
-0.2
141
Tumor
-0.2
111
Normal
-0.2
874
Normal
-0.2
537
Tumor
-0.2
1045
Tumor
-0.2
665
Tumor
-0.2
451
Tumor
-0.2
925
Tumor
-0.2
722
Normal
-0.2
366
Normal
-0.2
467
Tumor
-0.2
135
Tumor
-0.2
314
Normal
-0.2
564
Normal
-0.2
413
Tumor
-0.2
913
Tumor
-0.2
816
Normal
-0.2
311
Tumor
-0.2
214
Normal
-0.2
937
Tumor
-0.2
523
Tumor
-0.2
312
Normal
-0.2
424
Normal
-0.2
126
Normal
-0.2
666
Normal
-0.2
217
Tumor
-0.2
628
Normal
-0.2
188
Normal
-0.2
192
Normal
-0.2
884
Normal
-0.3
297
Tumor
-0.3
852
Normal
-0.3
262
Normal
-0.3
425
Tumor
-0.3
461
Tumor
-0.3
615
Tumor
-0.3
362
Normal
-0.3
567
Tumor
-0.3
616
Normal
-0.3
125
Tumor
-0.3
617
Tumor
-0.3
558
Normal
-0.3
743
Tumor
-0.3
917
Tumor
-0.3
721
Tumor
-0.3
978
Normal
-0.3
863
Tumor
-0.3
211
Tumor
-0.3
455
Tumor
-0.3
327
Tumor
-0.3
187
Tumor
-0.3
223
Tumor
-0.3
943
Tumor
-0.4
857
Tumor
-0.4
313
Tumor
-0.4
343
Tumor
-0.4
563
Tumor
-0.4
713
Tumor
-0.4
983
Tumor
-0.4
814
Normal
-0.4
145
Tumor
-0.4
367
Tumor
-0.4
815
Tumor
-0.4
384
Normal
-0.4
627
Tumor
-0.4
375
Tumor
-0.5
385
Tumor
-0.5
283
Tumor
-0.5
213
Tumor
-0.5
395
Tumor
-0.5
557
Tumor
-0.5
427
Tumor
-0.5
365
Tumor
-0.5
331
Tumor
-0.5
813
Tumor
-0.5
191
Tumor
-0.5
391
Tumor
-0.6
113
Tumor
-0.6
661
Tumor
-0.7
383
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
