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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CTDNEP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
121.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
99.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
76.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
71.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
65.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
47.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
44.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
34.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CTDNEP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.3
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
145.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
129.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
112.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
98.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
96.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
90.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
83.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
80.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
77.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
77.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
77.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
76.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
75.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
67.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
66.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
65.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
60.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
55.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
55.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
55.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
52.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
52.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
52.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
51.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
51.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
46.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
44.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
43.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
43.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
43.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
41.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
41.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
39.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
38.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
34.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
32.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
28.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
1.0
467
Tumor
0.9
283
Tumor
0.8
466
Normal
0.8
464
Normal
0.8
452
Normal
0.7
468
Normal
0.7
983
Tumor
0.5
224
Normal
0.5
877
Tumor
0.5
388
Normal
0.5
672
Normal
0.5
384
Normal
0.5
391
Tumor
0.5
456
Normal
0.5
192
Normal
0.5
286
Normal
0.4
311
Tumor
0.4
211
Tumor
0.4
368
Normal
0.4
482
Normal
0.4
491
Tumor
0.4
713
Tumor
0.4
227
Tumor
0.4
857
Tumor
0.4
284
Normal
0.4
392
Normal
0.4
912
Normal
0.4
618
Normal
0.4
367
Tumor
0.4
1015
Tumor
0.4
813
Tumor
0.4
214
Normal
0.3
755
Tumor
0.3
394
Normal
0.3
926
Normal
0.3
212
Normal
0.3
481
Tumor
0.3
393
Tumor
0.3
196
Normal
0.3
124
Normal
0.3
222
Normal
0.3
786
Normal
0.3
524
Normal
0.3
387
Tumor
0.3
218
Normal
0.3
964
Normal
0.3
814
Normal
0.3
628
Normal
0.3
616
Normal
0.3
125
Tumor
0.3
172
Normal
0.3
366
Normal
0.3
277
Tumor
0.3
462
Normal
0.3
863
Tumor
0.3
228
Normal
0.3
756
Normal
0.3
278
Normal
0.3
186
Normal
0.3
162
Normal
0.3
664
Normal
0.3
223
Tumor
0.3
268
Normal
0.3
884
Normal
0.3
383
Tumor
0.3
114
Normal
0.3
126
Normal
0.3
954
Normal
0.3
944
Normal
0.3
572
Normal
0.3
516
Normal
0.3
472
Normal
0.3
514
Normal
0.3
984
Normal
0.2
981
Tumor
0.2
498
Normal
0.2
662
Normal
0.2
526
Normal
0.2
147
Tumor
0.2
922
Normal
0.2
642
Normal
0.2
451
Tumor
0.2
363
Tumor
0.2
128
Normal
0.2
217
Tumor
0.2
722
Normal
0.2
721
Tumor
0.2
661
Tumor
0.2
314
Normal
0.2
497
Tumor
0.2
148
Normal
0.2
127
Tumor
0.2
262
Normal
0.2
636
Normal
0.2
641
Tumor
0.2
666
Normal
0.2
113
Tumor
0.2
332
Normal
0.2
977
Tumor
0.2
362
Normal
0.2
868
Normal
0.2
818
Normal
0.2
728
Normal
0.2
858
Normal
0.2
386
Normal
0.2
617
Tumor
0.2
978
Normal
0.2
627
Tumor
0.2
1014
Normal
0.2
518
Normal
0.2
492
Normal
0.2
396
Normal
0.2
744
Normal
0.2
956
Normal
0.2
738
Normal
0.2
213
Tumor
0.2
953
Tumor
0.2
557
Tumor
0.2
824
Normal
0.2
723
Tumor
0.2
536
Normal
0.1
742
Normal
0.1
727
Tumor
0.1
188
Normal
0.1
478
Normal
0.1
361
Tumor
0.1
365
Tumor
0.1
356
Normal
0.1
517
Tumor
0.1
232
Normal
0.1
864
Normal
0.1
258
Normal
0.1
297
Tumor
0.1
671
Tumor
0.1
455
Tumor
0.1
376
Normal
0.1
724
Normal
0.1
918
Normal
0.1
938
Normal
0.1
1045
Tumor
0.1
111
Normal
0.1
982
Normal
0.1
272
Normal
0.1
574
Normal
0.1
494
Normal
0.1
221
Tumor
0.1
385
Tumor
0.1
312
Normal
0.1
558
Normal
0.1
715
Tumor
0.1
862
Normal
0.1
874
Normal
0.1
474
Normal
0.1
375
Tumor
0.1
261
Tumor
0.1
976
Normal
0.1
564
Normal
0.1
866
Normal
0.1
488
Normal
0.1
914
Normal
0.0
1046
Normal
0.0
515
Tumor
0.0
416
Normal
0.0
568
Normal
0.0
1027
Tumor
0.0
331
Tumor
0.0
131
Tumor
0.0
852
Normal
0.0
696
Normal
0.0
364
Normal
0.0
195
Tumor
0.0
298
Normal
0.0
493
Tumor
0.0
955
Tumor
0.0
916
Normal
0.0
187
Tumor
0.0
328
Normal
0.0
741
Tumor
0.0
112
Tumor
0.0
1044
Normal
0.0
411
Tumor
0.0
136
Normal
0.0
665
Tumor
0.0
487
Tumor
0.0
285
Tumor
0.0
1032
Normal
0.0
513
Tumor
0.0
535
Tumor
0.0
571
Tumor
0.0
313
Tumor
0.0
483
Tumor
0.0
271
Tumor
0.0
716
Normal
0.0
975
Tumor
0.0
1042
Normal
0.0
958
Normal
0.0
686
Normal
0.0
563
Tumor
0.0
477
Tumor
0.0
525
Tumor
0.0
851
Tumor
-0.1
714
Normal
-0.1
697
Tumor
-0.1
1031
Tumor
-0.1
882
Normal
-0.1
1016
Normal
-0.1
1043
Tumor
-0.1
171
Tumor
-0.1
573
Tumor
-0.1
138
Normal
-0.1
231
Tumor
-0.1
1028
Normal
-0.1
267
Tumor
-0.1
567
Tumor
-0.1
142
Normal
-0.1
778
Normal
-0.1
648
Normal
-0.1
873
Tumor
-0.1
191
Tumor
-0.1
415
Tumor
-0.1
123
Tumor
-0.1
448
Normal
-0.1
523
Tumor
-0.1
534
Normal
-0.1
966
Normal
-0.1
132
Normal
-0.1
553
Tumor
-0.1
447
Tumor
-0.1
685
Tumor
-0.1
395
Tumor
-0.1
537
Tumor
-0.2
963
Tumor
-0.2
412
Normal
-0.2
257
Tumor
-0.2
484
Normal
-0.2
924
Normal
-0.2
327
Tumor
-0.2
952
Normal
-0.2
777
Tumor
-0.2
915
Tumor
-0.2
816
Normal
-0.2
647
Tumor
-0.2
145
Tumor
-0.2
527
Tumor
-0.2
137
Tumor
-0.2
533
Tumor
-0.2
1025
Tumor
-0.2
355
Tumor
-0.2
635
Tumor
-0.2
528
Normal
-0.2
538
Normal
-0.2
1026
Normal
-0.2
663
Tumor
-0.2
615
Tumor
-0.3
1022
Normal
-0.3
968
Normal
-0.3
746
Normal
-0.3
698
Normal
-0.3
743
Tumor
-0.3
878
Normal
-0.3
815
Tumor
-0.3
185
Tumor
-0.3
737
Tumor
-0.3
911
Tumor
-0.3
545
Tumor
-0.3
967
Tumor
-0.3
695
Tumor
-0.3
785
Tumor
-0.3
937
Tumor
-0.3
817
Tumor
-0.3
554
Normal
-0.3
881
Tumor
-0.3
146
Normal
-0.4
913
Tumor
-0.4
161
Tumor
-0.4
923
Tumor
-0.4
473
Tumor
-0.4
867
Tumor
-0.4
461
Tumor
-0.4
1021
Tumor
-0.4
1013
Tumor
-0.4
135
Tumor
-0.4
546
Normal
-0.5
861
Tumor
-0.5
883
Tumor
-0.5
745
Tumor
-0.5
943
Tumor
-0.5
141
Tumor
-0.5
921
Tumor
-0.5
925
Tumor
-0.5
1041
Tumor
-0.6
865
Tumor
-0.6
465
Tumor
-0.6
957
Tumor
-0.6
965
Tumor
-0.6
823
Tumor
-0.6
951
Tumor
-0.7
917
Tumor
-0.7
471
Tumor
-0.9
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.