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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCDC85B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
95.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
72.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
53.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
52.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
52.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
47.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
42.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
41.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
40.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
37.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
36.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
36.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
31.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCDC85B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
64.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
42.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
36.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
258
Normal
0.7
185
Tumor
0.6
186
Normal
0.6
161
Tumor
0.6
187
Tumor
0.6
188
Normal
0.6
664
Normal
0.6
162
Normal
0.5
641
Tumor
0.5
232
Normal
0.5
172
Normal
0.5
525
Tumor
0.5
1041
Tumor
0.5
1043
Tumor
0.5
1021
Tumor
0.4
272
Normal
0.4
926
Normal
0.4
635
Tumor
0.4
1022
Normal
0.4
627
Tumor
0.4
211
Tumor
0.4
533
Tumor
0.4
858
Normal
0.4
1031
Tumor
0.4
777
Tumor
0.4
615
Tumor
0.3
1025
Tumor
0.3
665
Tumor
0.3
147
Tumor
0.3
491
Tumor
0.3
493
Tumor
0.3
483
Tumor
0.3
1027
Tumor
0.3
1045
Tumor
0.3
922
Normal
0.3
981
Tumor
0.3
924
Normal
0.3
636
Normal
0.3
553
Tumor
0.3
523
Tumor
0.2
527
Tumor
0.2
916
Normal
0.2
257
Tumor
0.2
223
Tumor
0.2
538
Normal
0.2
923
Tumor
0.2
513
Tumor
0.2
785
Tumor
0.2
148
Normal
0.2
661
Tumor
0.2
917
Tumor
0.2
1028
Normal
0.2
192
Normal
0.2
357
Tumor
0.2
171
Tumor
0.2
497
Tumor
0.2
662
Normal
0.2
268
Normal
0.2
213
Tumor
0.2
554
Normal
0.2
537
Tumor
0.2
343
Tumor
0.2
262
Normal
0.2
524
Normal
0.1
1032
Normal
0.1
745
Tumor
0.1
267
Tumor
0.1
918
Normal
0.1
123
Tumor
0.1
778
Normal
0.1
813
Tumor
0.1
663
Tumor
0.1
125
Tumor
0.1
618
Normal
0.1
672
Normal
0.1
617
Tumor
0.1
353
Tumor
0.1
344
Normal
0.1
1042
Normal
0.1
492
Normal
0.1
534
Normal
0.1
814
Normal
0.1
352
Normal
0.1
1016
Normal
0.1
221
Tumor
0.1
671
Tumor
0.1
196
Normal
0.1
1026
Normal
0.0
546
Normal
0.0
227
Tumor
0.0
982
Normal
0.0
127
Tumor
0.0
231
Tumor
0.0
112
Tumor
0.0
214
Normal
0.0
616
Normal
0.0
755
Tumor
0.0
358
Normal
0.0
224
Normal
0.0
487
Tumor
0.0
283
Tumor
0.0
647
Tumor
0.0
432
Normal
0.0
915
Tumor
0.0
218
Normal
0.0
113
Tumor
0.0
984
Normal
0.0
1046
Normal
0.0
217
Tumor
0.0
484
Normal
0.0
195
Tumor
0.0
261
Tumor
0.0
642
Normal
0.0
852
Normal
0.0
515
Tumor
0.0
341
Tumor
0.0
212
Normal
0.0
1014
Normal
0.0
498
Normal
-0.1
444
Normal
-0.1
111
Normal
-0.1
545
Tumor
-0.1
222
Normal
-0.1
526
Normal
-0.1
488
Normal
-0.1
228
Normal
-0.1
823
Tumor
-0.1
342
Normal
-0.1
528
Normal
-0.1
698
Normal
-0.1
126
Normal
-0.1
666
Normal
-0.1
285
Tumor
-0.1
448
Normal
-0.1
851
Tumor
-0.1
114
Normal
-0.1
857
Tumor
-0.1
977
Tumor
-0.1
628
Normal
-0.1
128
Normal
-0.1
354
Normal
-0.1
983
Tumor
-0.1
436
Normal
-0.1
648
Normal
-0.1
271
Tumor
-0.1
191
Tumor
-0.1
536
Normal
-0.2
815
Tumor
-0.2
713
Tumor
-0.2
494
Normal
-0.2
756
Normal
-0.2
818
Normal
-0.2
446
Normal
-0.2
124
Normal
-0.2
514
Normal
-0.2
824
Normal
-0.2
431
Tumor
-0.2
1015
Tumor
-0.2
434
Normal
-0.2
1013
Tumor
-0.2
445
Tumor
-0.2
816
Normal
-0.2
516
Normal
-0.2
1044
Normal
-0.2
978
Normal
-0.2
518
Normal
-0.3
786
Normal
-0.3
286
Normal
-0.3
746
Normal
-0.3
435
Tumor
-0.3
685
Tumor
-0.3
925
Tumor
-0.4
715
Tumor
-0.4
517
Tumor
-0.4
447
Tumor
-0.4
351
Tumor
-0.4
722
Normal
-0.4
433
Tumor
-0.5
695
Tumor
-0.5
697
Tumor
-0.5
921
Tumor
-0.5
284
Normal
-0.6
817
Tumor
-0.6
443
Tumor
-0.6
535
Tumor
-0.7
696
Normal
-0.7
686
Normal
-0.8
716
Normal
-0.9
721
Tumor
-1.0
714
Normal
-1.0
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
861
Tumor
N/A
741
Tumor
N/A
862
Normal
N/A
742
Normal
N/A
863
Tumor
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
