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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUGCT is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
65.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
227
Tumor
2.1
921
Tumor
1.7
465
Tumor
1.5
695
Tumor
1.4
1041
Tumor
1.3
517
Tumor
1.3
641
Tumor
1.3
341
Tumor
1.2
925
Tumor
1.2
951
Tumor
1.1
537
Tumor
1.1
435
Tumor
1.0
363
Tumor
1.0
1027
Tumor
1.0
685
Tumor
0.9
727
Tumor
0.9
1043
Tumor
0.9
571
Tumor
0.9
911
Tumor
0.9
967
Tumor
0.9
127
Tumor
0.8
411
Tumor
0.8
755
Tumor
0.8
851
Tumor
0.7
713
Tumor
0.7
477
Tumor
0.7
963
Tumor
0.7
817
Tumor
0.7
1025
Tumor
0.6
391
Tumor
0.6
553
Tumor
0.6
483
Tumor
0.6
473
Tumor
0.6
665
Tumor
0.6
977
Tumor
0.5
471
Tumor
0.5
387
Tumor
0.5
423
Tumor
0.5
393
Tumor
0.5
881
Tumor
0.5
563
Tumor
0.5
915
Tumor
0.5
445
Tumor
0.5
715
Tumor
0.5
873
Tumor
0.5
221
Tumor
0.5
185
Tumor
0.4
131
Tumor
0.4
271
Tumor
0.4
487
Tumor
0.4
965
Tumor
0.4
867
Tumor
0.4
388
Normal
0.4
113
Tumor
0.4
462
Normal
0.4
1031
Tumor
0.4
714
Normal
0.4
132
Normal
0.4
356
Normal
0.4
868
Normal
0.4
357
Tumor
0.4
924
Normal
0.3
534
Normal
0.3
786
Normal
0.3
361
Tumor
0.3
883
Tumor
0.3
975
Tumor
0.3
716
Normal
0.3
741
Tumor
0.3
1046
Normal
0.3
862
Normal
0.3
627
Tumor
0.3
186
Normal
0.3
742
Normal
0.3
416
Normal
0.3
196
Normal
0.3
635
Tumor
0.3
1014
Normal
0.3
1013
Tumor
0.3
647
Tumor
0.3
746
Normal
0.2
1032
Normal
0.2
642
Normal
0.2
394
Normal
0.2
944
Normal
0.2
861
Tumor
0.2
513
Tumor
0.2
257
Tumor
0.2
448
Normal
0.2
172
Normal
0.2
482
Normal
0.2
431
Tumor
0.2
436
Normal
0.2
494
Normal
0.2
342
Normal
0.2
554
Normal
0.2
564
Normal
0.2
785
Tumor
0.2
142
Normal
0.2
446
Normal
0.2
922
Normal
0.2
278
Normal
0.2
1021
Tumor
0.2
572
Normal
0.2
123
Tumor
0.2
191
Tumor
0.2
452
Normal
0.2
696
Normal
0.2
432
Normal
0.2
1045
Tumor
0.2
858
Normal
0.2
538
Normal
0.1
421
Tumor
0.1
615
Tumor
0.1
744
Normal
0.1
722
Normal
0.1
422
Normal
0.1
728
Normal
0.1
914
Normal
0.1
957
Tumor
0.1
412
Normal
0.1
686
Normal
0.1
978
Normal
0.1
124
Normal
0.1
745
Tumor
0.1
636
Normal
0.1
1026
Normal
0.1
365
Tumor
0.1
954
Normal
0.1
723
Tumor
0.1
414
Normal
0.1
546
Normal
0.1
616
Normal
0.1
648
Normal
0.1
756
Normal
0.1
171
Tumor
0.1
328
Normal
0.1
882
Normal
0.1
386
Normal
0.1
114
Normal
0.1
526
Normal
0.1
738
Normal
0.1
214
Normal
0.1
415
Tumor
0.1
148
Normal
0.1
396
Normal
0.1
1042
Normal
0.1
426
Normal
0.1
1022
Normal
0.1
468
Normal
0.1
344
Normal
0.1
472
Normal
0.1
964
Normal
0.0
187
Tumor
0.0
376
Normal
0.0
484
Normal
0.0
434
Normal
0.0
558
Normal
0.0
664
Normal
0.0
228
Normal
0.0
443
Tumor
0.0
514
Normal
0.0
146
Normal
0.0
926
Normal
0.0
364
Normal
0.0
128
Normal
0.0
698
Normal
0.0
464
Normal
0.0
433
Tumor
0.0
662
Normal
0.0
953
Tumor
0.0
516
Normal
0.0
314
Normal
0.0
428
Normal
0.0
232
Normal
0.0
824
Normal
0.0
424
Normal
0.0
112
Tumor
0.0
966
Normal
0.0
111
Normal
0.0
222
Normal
0.0
912
Normal
0.0
478
Normal
0.0
392
Normal
0.0
618
Normal
0.0
574
Normal
0.0
366
Normal
0.0
466
Normal
0.0
666
Normal
0.0
474
Normal
0.0
568
Normal
0.0
258
Normal
0.0
984
Normal
0.0
355
Tumor
-0.1
145
Tumor
-0.1
313
Tumor
-0.1
368
Normal
-0.1
488
Normal
-0.1
955
Tumor
-0.1
866
Normal
-0.1
1028
Normal
-0.1
147
Tumor
-0.1
195
Tumor
-0.1
272
Normal
-0.1
968
Normal
-0.1
138
Normal
-0.1
533
Tumor
-0.1
976
Normal
-0.1
852
Normal
-0.1
456
Normal
-0.1
938
Normal
-0.1
332
Normal
-0.1
778
Normal
-0.1
918
Normal
-0.1
354
Normal
-0.1
362
Normal
-0.1
262
Normal
-0.1
1044
Normal
-0.1
743
Tumor
-0.1
286
Normal
-0.2
958
Normal
-0.2
481
Tumor
-0.2
518
Normal
-0.2
878
Normal
-0.2
212
Normal
-0.2
523
Tumor
-0.2
818
Normal
-0.2
956
Normal
-0.2
874
Normal
-0.2
331
Tumor
-0.2
461
Tumor
-0.2
141
Tumor
-0.2
528
Normal
-0.2
515
Tumor
-0.2
816
Normal
-0.2
672
Normal
-0.2
923
Tumor
-0.2
162
Normal
-0.2
952
Normal
-0.2
231
Tumor
-0.2
161
Tumor
-0.2
444
Normal
-0.2
884
Normal
-0.3
137
Tumor
-0.3
277
Tumor
-0.3
218
Normal
-0.3
284
Normal
-0.3
312
Normal
-0.3
721
Tumor
-0.3
358
Normal
-0.3
261
Tumor
-0.3
297
Tumor
-0.3
136
Normal
-0.3
268
Normal
-0.3
628
Normal
-0.3
267
Tumor
-0.3
1016
Normal
-0.4
557
Tumor
-0.4
877
Tumor
-0.4
188
Normal
-0.4
525
Tumor
-0.4
857
Tumor
-0.4
224
Normal
-0.4
916
Normal
-0.4
384
Normal
-0.4
352
Normal
-0.4
671
Tumor
-0.5
535
Tumor
-0.5
573
Tumor
-0.5
937
Tumor
-0.5
493
Tumor
-0.5
353
Tumor
-0.5
498
Normal
-0.5
135
Tumor
-0.5
492
Normal
-0.5
982
Normal
-0.5
524
Normal
-0.5
913
Tumor
-0.5
864
Normal
-0.5
217
Tumor
-0.5
298
Normal
-0.5
813
Tumor
-0.5
213
Tumor
-0.5
385
Tumor
-0.6
192
Normal
-0.6
981
Tumor
-0.6
617
Tumor
-0.6
536
Normal
-0.6
823
Tumor
-0.6
126
Normal
-0.6
814
Normal
-0.7
863
Tumor
-0.7
327
Tumor
-0.7
463
Tumor
-0.7
413
Tumor
-0.7
527
Tumor
-0.7
451
Tumor
-0.7
447
Tumor
-0.8
455
Tumor
-0.8
567
Tumor
-0.8
367
Tumor
-0.8
983
Tumor
-0.8
777
Tumor
-0.8
865
Tumor
-0.8
724
Normal
-0.8
663
Tumor
-0.9
223
Tumor
-0.9
427
Tumor
-0.9
815
Tumor
-0.9
351
Tumor
-0.9
395
Tumor
-0.9
125
Tumor
-0.9
425
Tumor
-1.0
285
Tumor
-1.0
943
Tumor
-1.0
545
Tumor
-1.1
383
Tumor
-1.1
343
Tumor
-1.2
1015
Tumor
-1.2
491
Tumor
-1.2
737
Tumor
-1.3
697
Tumor
-1.3
661
Tumor
-1.3
917
Tumor
-1.3
497
Tumor
-1.4
375
Tumor
-1.5
467
Tumor
-1.5
311
Tumor
-1.5
211
Tumor
-1.7
283
Tumor
-1.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
