MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.9 nTPM
HPA Brain:184.1 nTPM
GTEx:99.9 nTPM
FANTOM5:104.1 Scaled Tags Per Million
Pig:264.2 nTPM
Mouse:346.7 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 184.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 155.7
1827 Male, age 72, unknown 172.4
2019 Male, age 18, unknown 169.8
2411 Female, age 72, unknown 169.3
2586 Male, age 75, left hemisphere 159.1
2666 Male, age 74, left hemisphere 156.2
2828 Female, age 72, unknown 152.5
1870 Female, age 42, unknown 149.0
1833 Male, age 53, unknown 146.8
2219 Male, age 76, both hemispheres 144.4
1830 Male, age 51, unknown 137.3
Dorsal raphe nucleus
nTPM: 153.1
2298 Female, age 72, unknown 194.8
2750 Male, age 76, both hemispheres 156.4
2047 Male, age 72, unknown 152.2
1828 Male, age 53, unknown 144.4
2016 Female, age 72, unknown 117.6
Inferior colliculus
nTPM: 132.4
2097 Female, age 72, unknown 147.0
1848 Female, age 42, unknown 135.6
2849 Male, age 72, unknown 126.9
1890 Male, age 53, unknown 120.1
Median raphe nucleus
nTPM: 175.3
2220 Male, age 76, midline 175.3
Periaquaductal grey, anterior
nTPM: 184.1
1947 Male, age 18, unknown 187.1
1795 Male, age 51, unknown 183.5
2502 Female, age 75, unknown 181.8
Periaquaductal grey, dorsal
nTPM: 129.7
2850 Male, age 76, both hemispheres 139.7
1831 Male, age 72, unknown 132.8
1840 Male, age 53, unknown 127.4
2464 Female, age 72, unknown 118.7
Periaquaductal grey, lateral
nTPM: 134.0
2272 Male, age 74, both hemispheres 143.3
2053 Male, age 18, unknown 140.6
2140 Male, age 76, both hemispheres 118.2
Pretectal area
nTPM: 175.0
1816 Male, age 51, unknown 227.1
2007 Male, age 72, unknown 223.5
1817 Female, age 42, unknown 214.7
1944 Female, age 72, unknown 213.1
1815 Male, age 53, unknown 199.8
2224 Female, age 72, unknown 162.5
2667 Female, age 75, unknown 151.0
2273 Male, age 74, both hemispheres 140.8
2825 Male, age 18, unknown 133.4
2316 Male, age 76, right hemisphere 130.5
2407 Male, age 75, both hemispheres 128.9
Red nucleus
nTPM: 139.4
1821 Female, age 72, unknown 171.4
2785 Male, age 18, unknown 156.6
2588 Male, age 74, left hemisphere 147.6
2503 Female, age 72, unknown 145.7
2725 Female, age 75, unknown 142.5
2584 Male, age 75, left hemisphere 137.8
1865 Male, age 51, unknown 137.2
2823 Male, age 76, right hemisphere 132.2
1954 Female, age 42, unknown 131.7
1904 Male, age 53, unknown 128.8
2227 Male, age 72, unknown 122.9
2769 Male, age 72, unknown 118.7
Substantia nigra
nTPM: 171.6
1941 Male, age 53, unknown 221.5
1916 Female, age 42, unknown 209.5
1889 Female, age 72, unknown 200.7
2241 Male, age 72, unknown 187.5
1851 Male, age 51, unknown 176.6
2590 Female, age 75, unknown 149.6
2665 Male, age 74, both hemispheres 145.5
2409 Female, age 72, unknown 143.8
2583 Male, age 75, right hemisphere 143.2
2699 Male, age 18, unknown 138.3
Superior colliculus
nTPM: 160.2
2668 Female, age 75, unknown 200.4
2261 Male, age 18, unknown 188.3
2087 Female, age 72, unknown 174.4
1796 Male, age 53, unknown 167.2
2587 Male, age 74, left hemisphere 157.9
2664 Male, age 75, both hemispheres 149.0
1895 Male, age 76, right hemisphere 145.4
1913 Female, age 42, unknown 145.1
1839 Male, age 51, unknown 143.8
1995 Male, age 72, unknown 130.9
Ventral tegmental area
nTPM: 156.1
2410 Female, age 72, unknown 190.5
2218 Male, age 76, both hemispheres 170.2
1915 Female, age 42, unknown 159.6
2223 Female, age 72, unknown 147.4
1942 Male, age 51, unknown 141.4
2021 Male, age 53, unknown 127.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 99.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.9
Samples: 139

Max nTPM: 276.2
Min nTPM: 66.0
Std nTPM: 28.9
Median nTPM: 91.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 276.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 234.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 191.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 180.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 156.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 156.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 151.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 149.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 143.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 140.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 137.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 104.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.1
FF:10158-103A5 76 years, female 104.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 264.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 207.0
Samples: 4

Max nTPM: 266.4
Min nTPM: 150.9
Sample A Female 266.4
Sample B Female 153.7
Sample C Male 256.8
Sample D Male 150.9
Midbrain
nTPM: 264.2
Samples: 4

Max nTPM: 429.3
Min nTPM: 190.0
Sample A Female 216.3
Sample B Female 190.0
Sample C Male 429.3
Sample D Male 221.0
Periaqueductal gray
nTPM: 167.5
Samples: 3

Max nTPM: 192.2
Min nTPM: 154.8
Sample B Female 155.5
Sample C Male 192.2
Sample D Male 154.8
Superior colliculi
nTPM: 248.7
Samples: 4

Max nTPM: 368.0
Min nTPM: 143.0
Sample A Female 247.0
Sample B Female 143.0
Sample C Male 368.0
Sample D Male 236.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 346.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 346.7
Samples: 4

Max nTPM: 362.0
Min nTPM: 324.7
Sample A Male 324.7
Sample B Male 358.7
Sample C Female 362.0
Sample D Female 341.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
74047909 Antisense, RP_051214_02_C06, Mouse strain C57BL/6J (56 days, male) 16.0
532748 Antisense, RP_040825_02_A11, Mouse strain C57BL/6J (56 days, male) 5.4

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