MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.4 nTPM
HPA Brain:28.3 nTPM
GTEx:2.4 nTPM
FANTOM5:22.0 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:9.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.7
2219 Male, age 76, both hemispheres 31.3
1870 Female, age 42, unknown 18.8
1830 Male, age 51, unknown 15.5
2666 Male, age 74, left hemisphere 15.3
2586 Male, age 75, left hemisphere 15.0
1833 Male, age 53, unknown 13.5
2411 Female, age 72, unknown 12.9
1827 Male, age 72, unknown 12.8
2828 Female, age 72, unknown 12.4
2019 Male, age 18, unknown 9.9
Dorsal raphe nucleus
nTPM: 12.5
2016 Female, age 72, unknown 15.7
2047 Male, age 72, unknown 13.5
2298 Female, age 72, unknown 12.3
1828 Male, age 53, unknown 11.3
2750 Male, age 76, both hemispheres 9.7
Inferior colliculus
nTPM: 19.3
1848 Female, age 42, unknown 20.9
2849 Male, age 72, unknown 19.8
2097 Female, age 72, unknown 19.6
1890 Male, age 53, unknown 17.1
Median raphe nucleus
nTPM: 9.7
2220 Male, age 76, midline 9.7
Periaquaductal grey, anterior
nTPM: 15.5
1947 Male, age 18, unknown 20.3
1795 Male, age 51, unknown 15.4
2502 Female, age 75, unknown 10.8
Periaquaductal grey, dorsal
nTPM: 14.2
1840 Male, age 53, unknown 19.1
2464 Female, age 72, unknown 14.5
1831 Male, age 72, unknown 13.1
2850 Male, age 76, both hemispheres 10.1
Periaquaductal grey, lateral
nTPM: 10.1
2053 Male, age 18, unknown 11.8
2140 Male, age 76, both hemispheres 9.6
2272 Male, age 74, both hemispheres 8.9
Pretectal area
nTPM: 14.5
2224 Female, age 72, unknown 20.7
2667 Female, age 75, unknown 19.9
2825 Male, age 18, unknown 18.3
1944 Female, age 72, unknown 17.6
2407 Male, age 75, both hemispheres 15.1
1816 Male, age 51, unknown 14.5
2007 Male, age 72, unknown 13.3
1817 Female, age 42, unknown 13.2
2273 Male, age 74, both hemispheres 9.2
1815 Male, age 53, unknown 9.1
2316 Male, age 76, right hemisphere 9.0
Red nucleus
nTPM: 11.1
2584 Male, age 75, left hemisphere 23.3
1821 Female, age 72, unknown 14.1
2725 Female, age 75, unknown 11.4
1954 Female, age 42, unknown 11.3
2227 Male, age 72, unknown 11.3
2769 Male, age 72, unknown 10.7
1865 Male, age 51, unknown 9.7
2785 Male, age 18, unknown 9.6
1904 Male, age 53, unknown 9.1
2823 Male, age 76, right hemisphere 8.7
2503 Female, age 72, unknown 7.0
2588 Male, age 74, left hemisphere 7.0
Substantia nigra
nTPM: 28.3
2665 Male, age 74, both hemispheres 44.6
2409 Female, age 72, unknown 44.3
1851 Male, age 51, unknown 33.2
2241 Male, age 72, unknown 30.9
1941 Male, age 53, unknown 28.2
1916 Female, age 42, unknown 27.4
2699 Male, age 18, unknown 27.3
2583 Male, age 75, right hemisphere 18.8
1889 Female, age 72, unknown 14.5
2590 Female, age 75, unknown 14.2
Superior colliculus
nTPM: 14.9
2668 Female, age 75, unknown 24.6
1895 Male, age 76, right hemisphere 16.5
1839 Male, age 51, unknown 15.9
1796 Male, age 53, unknown 15.4
2087 Female, age 72, unknown 14.5
2664 Male, age 75, both hemispheres 13.7
1995 Male, age 72, unknown 13.2
2587 Male, age 74, left hemisphere 12.3
1913 Female, age 42, unknown 11.5
2261 Male, age 18, unknown 11.2
Ventral tegmental area
nTPM: 24.9
1915 Female, age 42, unknown 41.0
2021 Male, age 53, unknown 35.1
2223 Female, age 72, unknown 22.8
2218 Male, age 76, both hemispheres 19.5
1942 Male, age 51, unknown 16.7
2410 Female, age 72, unknown 14.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.4
Samples: 139

Max nTPM: 16.6
Min nTPM: 0.4
Std nTPM: 1.9
Median nTPM: 2.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 10.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 6.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 6.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 6.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 5.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 5.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 5.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 5.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 5.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.0
FF:10158-103A5 76 years, female 22.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.1
Samples: 4

Max nTPM: 22.2
Min nTPM: 14.8
Sample A Female 18.6
Sample B Female 22.2
Sample C Male 16.6
Sample D Male 14.8
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.1
Sample A Female 15.5
Sample B Female 13.8
Sample C Male 10.1
Sample D Male 14.3
Periaqueductal gray
nTPM: 11.3
Samples: 3

Max nTPM: 13.2
Min nTPM: 8.8
Sample B Female 11.9
Sample C Male 13.2
Sample D Male 8.8
Superior colliculi
nTPM: 12.2
Samples: 4

Max nTPM: 15.5
Min nTPM: 9.6
Sample A Female 11.8
Sample B Female 9.6
Sample C Male 12.0
Sample D Male 15.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.6
Sample A Male 9.6
Sample B Male 11.3
Sample C Female 9.6
Sample D Female 8.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
75985954 Antisense, RP_060606_02_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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