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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2R2D is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.0
617
Tumor
0.9
147
Tumor
0.8
113
Tumor
0.6
851
Tumor
0.6
1027
Tumor
0.6
191
Tumor
0.6
314
Normal
0.5
743
Tumor
0.5
724
Normal
0.5
917
Tumor
0.5
616
Normal
0.4
432
Normal
0.4
884
Normal
0.4
745
Tumor
0.4
723
Tumor
0.4
742
Normal
0.4
746
Normal
0.4
436
Normal
0.4
126
Normal
0.4
278
Normal
0.4
188
Normal
0.4
663
Tumor
0.4
648
Normal
0.4
664
Normal
0.4
738
Normal
0.4
462
Normal
0.4
312
Normal
0.4
358
Normal
0.3
957
Tumor
0.3
862
Normal
0.3
451
Tumor
0.3
354
Normal
0.3
628
Normal
0.3
466
Normal
0.3
172
Normal
0.3
618
Normal
0.3
456
Normal
0.3
435
Tumor
0.3
446
Normal
0.3
186
Normal
0.3
272
Normal
0.3
298
Normal
0.3
464
Normal
0.3
327
Tumor
0.3
162
Normal
0.3
356
Normal
0.3
728
Normal
0.3
148
Normal
0.3
966
Normal
0.3
258
Normal
0.3
955
Tumor
0.3
132
Normal
0.3
911
Tumor
0.3
786
Normal
0.3
824
Normal
0.3
912
Normal
0.3
444
Normal
0.3
352
Normal
0.3
136
Normal
0.3
685
Tumor
0.3
427
Tumor
0.3
564
Normal
0.3
956
Normal
0.3
146
Normal
0.3
868
Normal
0.3
434
Normal
0.3
571
Tumor
0.3
965
Tumor
0.3
1022
Normal
0.3
864
Normal
0.3
422
Normal
0.3
332
Normal
0.3
858
Normal
0.2
722
Normal
0.2
698
Normal
0.2
262
Normal
0.2
111
Normal
0.2
952
Normal
0.2
662
Normal
0.2
852
Normal
0.2
123
Tumor
0.2
976
Normal
0.2
268
Normal
0.2
666
Normal
0.2
482
Normal
0.2
342
Normal
0.2
362
Normal
0.2
468
Normal
0.2
426
Normal
0.2
968
Normal
0.2
914
Normal
0.2
874
Normal
0.2
376
Normal
0.2
574
Normal
0.2
978
Normal
0.2
124
Normal
0.2
518
Normal
0.2
866
Normal
0.2
818
Normal
0.2
567
Tumor
0.2
364
Normal
0.2
138
Normal
0.2
328
Normal
0.2
416
Normal
0.2
816
Normal
0.2
558
Normal
0.2
568
Normal
0.2
211
Tumor
0.2
366
Normal
0.2
385
Tumor
0.2
918
Normal
0.2
922
Normal
0.2
386
Normal
0.2
114
Normal
0.2
514
Normal
0.2
714
Normal
0.2
214
Normal
0.2
958
Normal
0.2
467
Tumor
0.2
964
Normal
0.2
916
Normal
0.2
414
Normal
0.2
915
Tumor
0.2
1026
Normal
0.2
1016
Normal
0.2
572
Normal
0.2
1046
Normal
0.2
128
Normal
0.2
1042
Normal
0.2
882
Normal
0.2
368
Normal
0.2
1043
Tumor
0.2
744
Normal
0.2
516
Normal
0.1
756
Normal
0.1
636
Normal
0.1
492
Normal
0.1
375
Tumor
0.1
384
Normal
0.1
277
Tumor
0.1
627
Tumor
0.1
222
Normal
0.1
563
Tumor
0.1
448
Normal
0.1
218
Normal
0.1
513
Tumor
0.1
1044
Normal
0.1
232
Normal
0.1
1028
Normal
0.1
938
Normal
0.1
1015
Tumor
0.1
424
Normal
0.1
984
Normal
0.1
924
Normal
0.1
344
Normal
0.1
452
Normal
0.1
474
Normal
0.1
878
Normal
0.1
554
Normal
0.1
428
Normal
0.1
943
Tumor
0.1
716
Normal
0.1
383
Tumor
0.1
528
Normal
0.1
195
Tumor
0.1
187
Tumor
0.1
196
Normal
0.1
212
Normal
0.1
472
Normal
0.1
778
Normal
0.1
665
Tumor
0.1
394
Normal
0.1
944
Normal
0.1
982
Normal
0.1
977
Tumor
0.1
286
Normal
0.1
1032
Normal
0.1
257
Tumor
0.1
223
Tumor
0.1
877
Tumor
0.1
463
Tumor
0.1
925
Tumor
0.1
615
Tumor
0.1
672
Normal
0.1
526
Normal
0.1
926
Normal
0.0
363
Tumor
0.0
641
Tumor
0.0
192
Normal
0.0
741
Tumor
0.0
491
Tumor
0.0
1014
Normal
0.0
365
Tumor
0.0
284
Normal
0.0
412
Normal
0.0
686
Normal
0.0
311
Tumor
0.0
396
Normal
0.0
224
Normal
0.0
125
Tumor
0.0
951
Tumor
0.0
142
Normal
0.0
538
Normal
0.0
524
Normal
0.0
388
Normal
0.0
415
Tumor
0.0
696
Normal
0.0
145
Tumor
0.0
313
Tumor
0.0
213
Tumor
0.0
497
Tumor
0.0
975
Tumor
0.0
484
Normal
0.0
713
Tumor
0.0
661
Tumor
0.0
494
Normal
0.0
353
Tumor
0.0
392
Normal
0.0
285
Tumor
0.0
228
Normal
0.0
546
Normal
0.0
493
Tumor
0.0
817
Tumor
0.0
141
Tumor
0.0
881
Tumor
-0.1
488
Normal
-0.1
185
Tumor
-0.1
814
Normal
-0.1
425
Tumor
-0.1
642
Normal
-0.1
433
Tumor
-0.1
557
Tumor
-0.1
331
Tumor
-0.1
1025
Tumor
-0.1
536
Normal
-0.1
737
Tumor
-0.1
954
Normal
-0.1
391
Tumor
-0.1
534
Normal
-0.1
861
Tumor
-0.1
823
Tumor
-0.1
1013
Tumor
-0.1
421
Tumor
-0.1
721
Tumor
-0.1
411
Tumor
-0.1
1031
Tumor
-0.1
447
Tumor
-0.1
921
Tumor
-0.1
455
Tumor
-0.1
481
Tumor
-0.1
217
Tumor
-0.1
813
Tumor
-0.1
963
Tumor
-0.1
393
Tumor
-0.1
913
Tumor
-0.2
727
Tumor
-0.2
283
Tumor
-0.2
161
Tumor
-0.2
478
Normal
-0.2
1021
Tumor
-0.2
431
Tumor
-0.2
863
Tumor
-0.2
755
Tumor
-0.2
461
Tumor
-0.2
112
Tumor
-0.2
135
Tumor
-0.2
671
Tumor
-0.2
413
Tumor
-0.2
227
Tumor
-0.2
423
Tumor
-0.2
231
Tumor
-0.2
343
Tumor
-0.2
517
Tumor
-0.2
395
Tumor
-0.2
545
Tumor
-0.2
498
Normal
-0.2
271
Tumor
-0.2
465
Tumor
-0.2
221
Tumor
-0.2
777
Tumor
-0.2
785
Tumor
-0.2
937
Tumor
-0.3
983
Tumor
-0.3
873
Tumor
-0.3
515
Tumor
-0.3
857
Tumor
-0.3
171
Tumor
-0.3
355
Tumor
-0.3
1045
Tumor
-0.3
297
Tumor
-0.3
483
Tumor
-0.3
695
Tumor
-0.3
923
Tumor
-0.3
981
Tumor
-0.3
351
Tumor
-0.3
697
Tumor
-0.3
865
Tumor
-0.3
715
Tumor
-0.3
127
Tumor
-0.3
537
Tumor
-0.3
867
Tumor
-0.3
553
Tumor
-0.4
535
Tumor
-0.4
883
Tumor
-0.4
477
Tumor
-0.4
261
Tumor
-0.4
953
Tumor
-0.4
367
Tumor
-0.4
525
Tumor
-0.4
267
Tumor
-0.4
573
Tumor
-0.5
341
Tumor
-0.5
137
Tumor
-0.5
523
Tumor
-0.5
527
Tumor
-0.5
471
Tumor
-0.5
647
Tumor
-0.6
533
Tumor
-0.6
635
Tumor
-0.6
445
Tumor
-0.6
815
Tumor
-0.6
361
Tumor
-0.6
1041
Tumor
-0.6
357
Tumor
-0.7
387
Tumor
-0.7
487
Tumor
-0.7
473
Tumor
-0.7
443
Tumor
-0.9
967
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
