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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLTB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
311.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
240.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
239.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
224.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
189.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
182.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
157.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
155.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
148.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
146.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
144.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
132.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
130.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
125.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
125.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
124.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
124.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
123.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
121.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
120.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
115.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
115.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
112.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
111.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
110.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
110.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
108.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
107.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
107.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
104.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
103.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
102.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
102.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
101.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
100.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
98.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
98.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
98.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
98.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
96.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
96.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
96.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
96.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
95.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
95.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
94.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
94.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
93.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
93.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
91.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
91.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
90.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
89.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
89.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
88.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
87.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
87.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
87.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
86.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
86.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
86.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
86.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
86.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
86.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
85.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
84.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
84.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
84.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
83.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
83.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
82.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
81.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
81.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
81.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
80.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
80.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
80.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
79.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
79.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
79.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
78.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
78.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
78.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
77.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
77.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
77.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
77.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
76.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
76.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
76.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
76.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
75.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
75.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
75.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
75.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
75.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
75.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
74.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
74.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
73.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
73.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
73.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
73.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
73.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
71.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
71.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
70.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
70.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
70.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
70.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
69.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
69.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
69.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
69.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
69.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
69.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
69.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
69.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
69.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
68.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
68.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
68.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
67.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
67.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
67.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
67.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
67.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
67.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
67.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
67.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
67.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
67.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
66.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
66.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
66.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
66.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
65.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
65.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
65.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
65.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
65.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
64.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
64.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
63.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
63.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
63.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
63.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
63.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
63.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
63.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
63.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
63.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
62.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
62.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
62.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
61.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
61.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
61.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
61.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
60.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
60.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
60.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
60.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
60.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
60.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
60.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
60.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
60.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
59.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
59.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
59.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
59.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
59.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
58.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
58.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
58.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
57.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
57.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
57.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
56.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
56.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
56.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
56.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
56.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
55.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
55.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
55.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
55.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
55.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
55.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
55.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
54.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
54.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
54.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
54.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
54.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
54.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
53.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
53.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
53.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
53.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
53.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
53.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
52.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
52.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
52.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
52.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
52.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
51.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
51.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
51.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
51.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
51.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
50.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
50.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
49.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
49.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
49.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
49.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
49.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
48.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
48.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
48.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
47.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
47.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
47.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
46.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
46.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
46.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
46.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
46.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
45.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
45.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
45.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
45.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
45.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
45.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
45.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
45.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
45.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
45.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
45.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
45.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
44.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
44.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
44.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
44.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
44.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
43.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
43.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
43.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
43.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
43.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
42.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
42.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
42.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
41.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
41.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
41.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
40.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
40.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
40.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
39.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
39.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
39.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
39.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
38.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
38.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
36.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
36.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
36.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
35.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
34.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
33.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
33.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
31.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLTB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.6
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
554.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
426.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
185.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
177.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
161.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
154.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
142.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
138.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
114.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
103.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
100.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
99.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
91.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
89.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
85.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
80.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
79.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
76.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
73.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
73.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
72.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
70.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
68.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
68.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
67.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
67.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
64.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
64.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
62.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
62.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
62.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
60.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
60.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
59.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
58.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
58.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
58.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
58.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
58.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
56.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
56.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
55.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
55.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
54.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
53.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
53.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
52.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
52.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
52.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
52.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
51.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
51.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
50.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
50.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
49.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
49.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
49.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
49.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
47.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
46.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
46.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
46.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
46.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
46.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
45.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
43.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
43.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
43.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
42.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
42.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
41.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
41.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
41.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
41.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
41.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
39.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
37.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
37.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
36.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
36.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
36.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
36.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
34.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
33.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
31.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
30.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
1.0
327
Tumor
0.8
527
Tumor
0.8
745
Tumor
0.7
1027
Tumor
0.7
223
Tumor
0.6
135
Tumor
0.5
523
Tumor
0.5
515
Tumor
0.5
917
Tumor
0.5
492
Normal
0.5
627
Tumor
0.4
861
Tumor
0.4
952
Normal
0.4
944
Normal
0.4
737
Tumor
0.3
816
Normal
0.3
865
Tumor
0.3
554
Normal
0.3
923
Tumor
0.3
536
Normal
0.3
955
Tumor
0.3
685
Tumor
0.3
493
Tumor
0.3
483
Tumor
0.3
211
Tumor
0.3
518
Normal
0.3
916
Normal
0.3
777
Tumor
0.3
481
Tumor
0.3
557
Tumor
0.3
981
Tumor
0.3
535
Tumor
0.3
686
Normal
0.3
925
Tumor
0.3
375
Tumor
0.3
1013
Tumor
0.3
484
Normal
0.3
471
Tumor
0.3
462
Normal
0.3
1028
Normal
0.3
528
Normal
0.3
823
Tumor
0.3
363
Tumor
0.3
497
Tumor
0.3
698
Normal
0.3
534
Normal
0.3
778
Normal
0.2
474
Normal
0.2
478
Normal
0.2
954
Normal
0.2
516
Normal
0.2
866
Normal
0.2
524
Normal
0.2
738
Normal
0.2
938
Normal
0.2
697
Tumor
0.2
953
Tumor
0.2
874
Normal
0.2
473
Tumor
0.2
957
Tumor
0.2
514
Normal
0.2
353
Tumor
0.2
824
Normal
0.2
648
Normal
0.2
881
Tumor
0.2
538
Normal
0.2
963
Tumor
0.2
924
Normal
0.2
546
Normal
0.2
852
Normal
0.2
461
Tumor
0.2
664
Normal
0.2
968
Normal
0.2
526
Normal
0.2
415
Tumor
0.2
785
Tumor
0.2
172
Normal
0.2
873
Tumor
0.2
755
Tumor
0.2
162
Normal
0.2
412
Normal
0.2
728
Normal
0.2
533
Tumor
0.2
915
Tumor
0.2
943
Tumor
0.2
641
Tumor
0.2
878
Normal
0.2
395
Tumor
0.2
868
Normal
0.2
964
Normal
0.2
311
Tumor
0.2
328
Normal
0.2
746
Normal
0.1
355
Tumor
0.1
617
Tumor
0.1
525
Tumor
0.1
1026
Normal
0.1
147
Tumor
0.1
212
Normal
0.1
376
Normal
0.1
491
Tumor
0.1
1022
Normal
0.1
1043
Tumor
0.1
472
Normal
0.1
958
Normal
0.1
1021
Tumor
0.1
696
Normal
0.1
937
Tumor
0.1
864
Normal
0.1
148
Normal
0.1
261
Tumor
0.1
966
Normal
0.1
571
Tumor
0.1
494
Normal
0.1
918
Normal
0.1
498
Normal
0.1
857
Tumor
0.1
984
Normal
0.1
742
Normal
0.1
365
Tumor
0.1
356
Normal
0.1
813
Tumor
0.1
218
Normal
0.1
662
Normal
0.1
383
Tumor
0.1
716
Normal
0.1
914
Normal
0.1
867
Tumor
0.1
723
Tumor
0.1
427
Tumor
0.1
364
Normal
0.1
1025
Tumor
0.1
188
Normal
0.1
858
Normal
0.1
436
Normal
0.0
615
Tumor
0.0
448
Normal
0.0
136
Normal
0.0
672
Normal
0.0
451
Tumor
0.0
132
Normal
0.0
558
Normal
0.0
416
Normal
0.0
975
Tumor
0.0
285
Tumor
0.0
721
Tumor
0.0
1014
Normal
0.0
488
Normal
0.0
976
Normal
0.0
213
Tumor
0.0
977
Tumor
0.0
455
Tumor
0.0
231
Tumor
0.0
423
Tumor
0.0
393
Tumor
0.0
411
Tumor
0.0
863
Tumor
0.0
1031
Tumor
0.0
227
Tumor
0.0
434
Normal
0.0
482
Normal
0.0
1016
Normal
0.0
911
Tumor
0.0
258
Normal
0.0
714
Normal
0.0
362
Normal
0.0
137
Tumor
0.0
161
Tumor
0.0
344
Normal
0.0
913
Tumor
0.0
564
Normal
0.0
715
Tumor
0.0
883
Tumor
0.0
882
Normal
0.0
447
Tumor
0.0
368
Normal
0.0
982
Normal
0.0
572
Normal
0.0
922
Normal
0.0
636
Normal
0.0
268
Normal
0.0
666
Normal
0.0
956
Normal
0.0
387
Tumor
-0.1
467
Tumor
-0.1
862
Normal
-0.1
1032
Normal
-0.1
195
Tumor
-0.1
145
Tumor
-0.1
185
Tumor
-0.1
452
Normal
-0.1
921
Tumor
-0.1
563
Tumor
-0.1
466
Normal
-0.1
222
Normal
-0.1
262
Normal
-0.1
1041
Tumor
-0.1
722
Normal
-0.1
214
Normal
-0.1
228
Normal
-0.1
272
Normal
-0.1
568
Normal
-0.1
444
Normal
-0.1
113
Tumor
-0.1
628
Normal
-0.1
312
Normal
-0.1
431
Tumor
-0.1
361
Tumor
-0.1
142
Normal
-0.1
464
Normal
-0.1
618
Normal
-0.1
278
Normal
-0.1
642
Normal
-0.1
426
Normal
-0.1
477
Tumor
-0.1
283
Tumor
-0.1
744
Normal
-0.1
432
Normal
-0.1
187
Tumor
-0.1
314
Normal
-0.1
125
Tumor
-0.1
224
Normal
-0.1
386
Normal
-0.1
298
Normal
-0.1
138
Normal
-0.1
574
Normal
-0.1
817
Tumor
-0.1
114
Normal
-0.1
297
Tumor
-0.1
422
Normal
-0.1
126
Normal
-0.1
277
Tumor
-0.1
545
Tumor
-0.1
443
Tumor
-0.2
146
Normal
-0.2
1045
Tumor
-0.2
111
Normal
-0.2
286
Normal
-0.2
445
Tumor
-0.2
366
Normal
-0.2
978
Normal
-0.2
128
Normal
-0.2
421
Tumor
-0.2
468
Normal
-0.2
1044
Normal
-0.2
814
Normal
-0.2
284
Normal
-0.2
358
Normal
-0.2
232
Normal
-0.2
413
Tumor
-0.2
851
Tumor
-0.2
392
Normal
-0.2
433
Tumor
-0.2
342
Normal
-0.2
396
Normal
-0.2
456
Normal
-0.2
786
Normal
-0.2
352
Normal
-0.2
635
Tumor
-0.2
124
Normal
-0.2
616
Normal
-0.2
446
Normal
-0.2
196
Normal
-0.2
756
Normal
-0.2
394
Normal
-0.2
553
Tumor
-0.2
425
Tumor
-0.2
695
Tumor
-0.2
435
Tumor
-0.3
357
Tumor
-0.3
217
Tumor
-0.3
186
Normal
-0.3
385
Tumor
-0.3
663
Tumor
-0.3
567
Tumor
-0.3
332
Normal
-0.3
818
Normal
-0.3
192
Normal
-0.3
257
Tumor
-0.3
191
Tumor
-0.3
741
Tumor
-0.3
465
Tumor
-0.3
414
Normal
-0.3
1042
Normal
-0.3
967
Tumor
-0.3
926
Normal
-0.3
912
Normal
-0.3
1015
Tumor
-0.3
221
Tumor
-0.3
537
Tumor
-0.3
665
Tumor
-0.3
428
Normal
-0.4
424
Normal
-0.4
123
Tumor
-0.4
354
Normal
-0.4
743
Tumor
-0.4
983
Tumor
-0.4
384
Normal
-0.4
951
Tumor
-0.4
331
Tumor
-0.4
463
Tumor
-0.4
713
Tumor
-0.4
517
Tumor
-0.4
351
Tumor
-0.4
141
Tumor
-0.4
487
Tumor
-0.4
267
Tumor
-0.4
884
Normal
-0.5
647
Tumor
-0.5
724
Normal
-0.5
671
Tumor
-0.5
573
Tumor
-0.5
313
Tumor
-0.5
131
Tumor
-0.5
1046
Normal
-0.5
127
Tumor
-0.5
367
Tumor
-0.5
343
Tumor
-0.5
341
Tumor
-0.5
171
Tumor
-0.5
727
Tumor
-0.5
388
Normal
-0.6
112
Tumor
-0.7
877
Tumor
-0.7
271
Tumor
-0.7
391
Tumor
-0.7
965
Tumor
-0.7
815
Tumor
-0.8
661
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
