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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF1AD is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF1AD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.8
Number of samples
231
Samples
Sample
Description
TPM
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.3
211
Tumor
1.1
537
Tumor
1.0
743
Tumor
0.9
737
Tumor
0.9
635
Tumor
0.9
473
Tumor
0.9
865
Tumor
0.9
741
Tumor
0.8
697
Tumor
0.8
355
Tumor
0.8
647
Tumor
0.7
527
Tumor
0.7
923
Tumor
0.7
343
Tumor
0.7
814
Normal
0.7
977
Tumor
0.7
813
Tumor
0.7
141
Tumor
0.7
297
Tumor
0.6
493
Tumor
0.6
695
Tumor
0.6
283
Tumor
0.6
455
Tumor
0.6
285
Tumor
0.6
951
Tumor
0.6
533
Tumor
0.6
785
Tumor
0.6
1021
Tumor
0.6
535
Tumor
0.6
131
Tumor
0.6
311
Tumor
0.6
925
Tumor
0.6
957
Tumor
0.6
724
Normal
0.6
471
Tumor
0.6
375
Tumor
0.6
411
Tumor
0.6
573
Tumor
0.5
497
Tumor
0.5
351
Tumor
0.5
477
Tumor
0.5
617
Tumor
0.5
536
Normal
0.5
313
Tumor
0.5
627
Tumor
0.5
967
Tumor
0.5
861
Tumor
0.5
953
Tumor
0.5
487
Tumor
0.5
728
Normal
0.5
491
Tumor
0.5
777
Tumor
0.5
921
Tumor
0.4
331
Tumor
0.4
525
Tumor
0.4
447
Tumor
0.4
965
Tumor
0.4
545
Tumor
0.4
123
Tumor
0.4
354
Normal
0.4
943
Tumor
0.4
915
Tumor
0.4
745
Tumor
0.4
715
Tumor
0.4
1041
Tumor
0.4
217
Tumor
0.4
416
Normal
0.4
415
Tumor
0.4
963
Tumor
0.4
641
Tumor
0.4
112
Tumor
0.4
1027
Tumor
0.4
223
Tumor
0.4
952
Normal
0.4
481
Tumor
0.4
911
Tumor
0.4
483
Tumor
0.4
538
Normal
0.3
365
Tumor
0.3
553
Tumor
0.3
1025
Tumor
0.3
663
Tumor
0.3
1043
Tumor
0.3
851
Tumor
0.3
913
Tumor
0.3
727
Tumor
0.3
358
Normal
0.3
755
Tumor
0.3
944
Normal
0.3
981
Tumor
0.3
494
Normal
0.3
353
Tumor
0.3
857
Tumor
0.3
517
Tumor
0.3
881
Tumor
0.3
937
Tumor
0.3
823
Tumor
0.3
413
Tumor
0.3
484
Normal
0.3
213
Tumor
0.3
671
Tumor
0.3
127
Tumor
0.3
817
Tumor
0.3
524
Normal
0.3
192
Normal
0.3
1031
Tumor
0.3
966
Normal
0.3
492
Normal
0.2
786
Normal
0.2
615
Tumor
0.2
461
Tumor
0.2
721
Tumor
0.2
467
Tumor
0.2
368
Normal
0.2
956
Normal
0.2
125
Tumor
0.2
1042
Normal
0.2
815
Tumor
0.2
385
Tumor
0.2
955
Tumor
0.2
954
Normal
0.2
983
Tumor
0.2
746
Normal
0.2
488
Normal
0.2
367
Tumor
0.2
135
Tumor
0.2
352
Normal
0.2
224
Normal
0.2
142
Normal
0.2
361
Tumor
0.2
366
Normal
0.2
968
Normal
0.2
1016
Normal
0.2
391
Tumor
0.2
191
Tumor
0.2
515
Tumor
0.2
425
Tumor
0.2
567
Tumor
0.2
161
Tumor
0.1
862
Normal
0.1
478
Normal
0.1
128
Normal
0.1
714
Normal
0.1
498
Normal
0.1
554
Normal
0.1
982
Normal
0.1
924
Normal
0.1
975
Tumor
0.1
877
Tumor
0.1
277
Tumor
0.1
696
Normal
0.1
472
Normal
0.1
938
Normal
0.1
383
Tumor
0.1
661
Tumor
0.1
342
Normal
0.1
916
Normal
0.1
387
Tumor
0.1
1015
Tumor
0.1
534
Normal
0.1
362
Normal
0.1
863
Tumor
0.1
124
Normal
0.1
474
Normal
0.1
268
Normal
0.1
557
Tumor
0.1
327
Tumor
0.1
427
Tumor
0.1
137
Tumor
0.1
665
Tumor
0.1
132
Normal
0.1
214
Normal
0.1
344
Normal
0.1
628
Normal
0.1
883
Tumor
0.1
421
Tumor
0.1
1028
Normal
0.1
357
Tumor
0.1
976
Normal
0.1
513
Tumor
0.0
465
Tumor
0.0
1022
Normal
0.0
873
Tumor
0.0
918
Normal
0.0
984
Normal
0.0
978
Normal
0.0
376
Normal
0.0
171
Tumor
0.0
463
Tumor
0.0
958
Normal
0.0
384
Normal
0.0
528
Normal
0.0
698
Normal
0.0
228
Normal
0.0
914
Normal
0.0
716
Normal
0.0
364
Normal
0.0
526
Normal
0.0
1045
Tumor
0.0
686
Normal
0.0
636
Normal
0.0
221
Tumor
0.0
713
Tumor
0.0
874
Normal
0.0
111
Normal
0.0
195
Tumor
0.0
778
Normal
0.0
563
Tumor
0.0
1032
Normal
0.0
312
Normal
0.0
926
Normal
0.0
138
Normal
0.0
227
Tumor
0.0
922
Normal
0.0
546
Normal
0.0
286
Normal
0.0
642
Normal
0.0
523
Tumor
0.0
744
Normal
0.0
672
Normal
0.0
146
Normal
0.0
341
Tumor
0.0
262
Normal
0.0
742
Normal
0.0
462
Normal
0.0
272
Normal
0.0
113
Tumor
-0.1
435
Tumor
-0.1
114
Normal
-0.1
196
Normal
-0.1
267
Tumor
-0.1
126
Normal
-0.1
482
Normal
-0.1
818
Normal
-0.1
222
Normal
-0.1
516
Normal
-0.1
257
Tumor
-0.1
1044
Normal
-0.1
912
Normal
-0.1
284
Normal
-0.1
722
Normal
-0.1
616
Normal
-0.1
852
Normal
-0.1
456
Normal
-0.1
448
Normal
-0.1
884
Normal
-0.1
422
Normal
-0.1
514
Normal
-0.1
212
Normal
-0.1
232
Normal
-0.1
1046
Normal
-0.1
858
Normal
-0.1
271
Tumor
-0.1
867
Tumor
-0.1
412
Normal
-0.1
147
Tumor
-0.1
187
Tumor
-0.1
648
Normal
-0.1
395
Tumor
-0.2
618
Normal
-0.2
298
Normal
-0.2
816
Normal
-0.2
393
Tumor
-0.2
756
Normal
-0.2
572
Normal
-0.2
864
Normal
-0.2
433
Tumor
-0.2
423
Tumor
-0.2
882
Normal
-0.2
431
Tumor
-0.2
396
Normal
-0.2
574
Normal
-0.2
518
Normal
-0.2
868
Normal
-0.2
231
Tumor
-0.2
392
Normal
-0.2
451
Tumor
-0.2
558
Normal
-0.2
388
Normal
-0.2
328
Normal
-0.2
145
Tumor
-0.2
261
Tumor
-0.3
664
Normal
-0.3
445
Tumor
-0.3
363
Tumor
-0.3
185
Tumor
-0.3
444
Normal
-0.3
386
Normal
-0.3
424
Normal
-0.3
356
Normal
-0.3
258
Normal
-0.3
466
Normal
-0.3
1014
Normal
-0.3
866
Normal
-0.3
824
Normal
-0.3
878
Normal
-0.3
1026
Normal
-0.3
917
Tumor
-0.3
568
Normal
-0.3
964
Normal
-0.3
218
Normal
-0.3
564
Normal
-0.3
136
Normal
-0.3
148
Normal
-0.3
723
Tumor
-0.3
662
Normal
-0.4
666
Normal
-0.4
414
Normal
-0.4
428
Normal
-0.4
394
Normal
-0.4
464
Normal
-0.5
468
Normal
-0.5
446
Normal
-0.5
172
Normal
-0.5
571
Tumor
-0.5
738
Normal
-0.5
452
Normal
-0.5
188
Normal
-0.5
434
Normal
-0.5
186
Normal
-0.5
426
Normal
-0.6
685
Tumor
-0.6
162
Normal
-0.6
332
Normal
-0.6
278
Normal
-0.6
432
Normal
-0.6
443
Tumor
-0.7
436
Normal
-0.8
314
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
