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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM9B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
90.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
63.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
58.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
50.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
49.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
49.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
46.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
45.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
45.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
39.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
39.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
36.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
31.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM9B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.5
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
72.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
36.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
34.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
32.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
0.9
232
Normal
0.8
528
Normal
0.8
1013
Tumor
0.8
877
Tumor
0.8
258
Normal
0.8
647
Tumor
0.8
413
Tumor
0.7
922
Normal
0.7
746
Normal
0.7
1032
Normal
0.7
1046
Normal
0.6
533
Tumor
0.6
1022
Normal
0.6
1025
Tumor
0.6
923
Tumor
0.6
356
Normal
0.6
617
Tumor
0.6
756
Normal
0.6
484
Normal
0.6
686
Normal
0.5
262
Normal
0.5
488
Normal
0.5
786
Normal
0.5
1044
Normal
0.5
698
Normal
0.5
1042
Normal
0.5
983
Tumor
0.5
494
Normal
0.5
778
Normal
0.5
722
Normal
0.5
926
Normal
0.5
272
Normal
0.5
364
Normal
0.5
924
Normal
0.5
328
Normal
0.5
953
Tumor
0.5
412
Normal
0.5
755
Tumor
0.5
714
Normal
0.5
881
Tumor
0.4
716
Normal
0.4
1026
Normal
0.4
367
Tumor
0.4
572
Normal
0.4
918
Normal
0.4
696
Normal
0.4
641
Tumor
0.4
267
Tumor
0.4
571
Tumor
0.4
473
Tumor
0.4
478
Normal
0.4
355
Tumor
0.4
568
Normal
0.4
744
Normal
0.4
498
Normal
0.4
883
Tumor
0.4
481
Tumor
0.4
448
Normal
0.4
388
Normal
0.4
1028
Normal
0.3
474
Normal
0.3
482
Normal
0.3
564
Normal
0.3
1045
Tumor
0.3
436
Normal
0.3
745
Tumor
0.3
228
Normal
0.3
558
Normal
0.3
663
Tumor
0.3
462
Normal
0.3
472
Normal
0.3
713
Tumor
0.3
227
Tumor
0.3
695
Tumor
0.3
231
Tumor
0.3
395
Tumor
0.3
491
Tumor
0.3
1043
Tumor
0.3
916
Normal
0.3
393
Tumor
0.3
492
Normal
0.3
615
Tumor
0.3
868
Normal
0.3
172
Normal
0.3
451
Tumor
0.3
145
Tumor
0.3
464
Normal
0.2
536
Normal
0.2
268
Normal
0.2
383
Tumor
0.2
162
Normal
0.2
635
Tumor
0.2
466
Normal
0.2
737
Tumor
0.2
392
Normal
0.2
956
Normal
0.2
456
Normal
0.2
223
Tumor
0.2
286
Normal
0.2
416
Normal
0.2
863
Tumor
0.2
697
Tumor
0.2
857
Tumor
0.2
125
Tumor
0.2
361
Tumor
0.2
671
Tumor
0.2
915
Tumor
0.2
284
Normal
0.2
525
Tumor
0.2
212
Normal
0.2
375
Tumor
0.2
553
Tumor
0.1
513
Tumor
0.1
978
Normal
0.1
455
Tumor
0.1
224
Normal
0.1
913
Tumor
0.1
921
Tumor
0.1
1031
Tumor
0.1
661
Tumor
0.1
394
Normal
0.1
537
Tumor
0.1
411
Tumor
0.1
882
Normal
0.1
396
Normal
0.1
186
Normal
0.1
616
Normal
0.1
785
Tumor
0.1
957
Tumor
0.1
723
Tumor
0.1
534
Normal
0.1
427
Tumor
0.1
487
Tumor
0.1
742
Normal
0.1
261
Tumor
0.1
415
Tumor
0.1
471
Tumor
0.1
925
Tumor
0.1
938
Normal
0.1
477
Tumor
0.1
135
Tumor
0.1
823
Tumor
0.1
955
Tumor
0.1
148
Normal
0.0
468
Normal
0.0
546
Normal
0.0
515
Tumor
0.0
1041
Tumor
0.0
964
Normal
0.0
387
Tumor
0.0
1014
Normal
0.0
976
Normal
0.0
141
Tumor
0.0
574
Normal
0.0
864
Normal
0.0
385
Tumor
0.0
865
Tumor
0.0
493
Tumor
0.0
285
Tumor
0.0
878
Normal
0.0
386
Normal
0.0
142
Normal
0.0
636
Normal
0.0
851
Tumor
0.0
628
Normal
0.0
146
Normal
0.0
738
Normal
0.0
196
Normal
0.0
434
Normal
0.0
538
Normal
0.0
524
Normal
0.0
554
Normal
0.0
483
Tumor
0.0
777
Tumor
0.0
984
Normal
0.0
545
Tumor
0.0
447
Tumor
0.0
627
Tumor
-0.1
435
Tumor
-0.1
497
Tumor
-0.1
461
Tumor
-0.1
944
Normal
-0.1
452
Normal
-0.1
815
Tumor
-0.1
363
Tumor
-0.1
648
Normal
-0.1
666
Normal
-0.1
728
Normal
-0.1
966
Normal
-0.1
741
Tumor
-0.1
912
Normal
-0.1
861
Tumor
-0.1
188
Normal
-0.1
137
Tumor
-0.1
954
Normal
-0.1
968
Normal
-0.1
222
Normal
-0.1
467
Tumor
-0.1
665
Tumor
-0.1
818
Normal
-0.1
214
Normal
-0.1
952
Normal
-0.1
618
Normal
-0.1
672
Normal
-0.1
1015
Tumor
-0.1
642
Normal
-0.1
911
Tumor
-0.1
136
Normal
-0.1
446
Normal
-0.1
866
Normal
-0.1
138
Normal
-0.1
123
Tumor
-0.1
523
Tumor
-0.1
858
Normal
-0.1
884
Normal
-0.2
218
Normal
-0.2
421
Tumor
-0.2
824
Normal
-0.2
131
Tumor
-0.2
662
Normal
-0.2
817
Tumor
-0.2
664
Normal
-0.2
914
Normal
-0.2
874
Normal
-0.2
391
Tumor
-0.2
563
Tumor
-0.2
132
Normal
-0.2
1016
Normal
-0.2
465
Tumor
-0.2
362
Normal
-0.2
516
Normal
-0.2
432
Normal
-0.2
384
Normal
-0.2
195
Tumor
-0.2
724
Normal
-0.2
958
Normal
-0.2
943
Tumor
-0.2
977
Tumor
-0.2
217
Tumor
-0.2
187
Tumor
-0.2
257
Tumor
-0.2
721
Tumor
-0.2
982
Normal
-0.2
526
Normal
-0.2
518
Normal
-0.3
191
Tumor
-0.3
431
Tumor
-0.3
463
Tumor
-0.3
113
Tumor
-0.3
743
Tumor
-0.3
1021
Tumor
-0.3
816
Normal
-0.3
517
Tumor
-0.3
557
Tumor
-0.3
862
Normal
-0.3
444
Normal
-0.3
221
Tumor
-0.4
573
Tumor
-0.4
981
Tumor
-0.4
185
Tumor
-0.4
192
Normal
-0.4
852
Normal
-0.4
965
Tumor
-0.4
445
Tumor
-0.4
873
Tumor
-0.4
975
Tumor
-0.4
426
Normal
-0.4
111
Normal
-0.4
951
Tumor
-0.4
967
Tumor
-0.4
124
Normal
-0.4
867
Tumor
-0.4
423
Tumor
-0.4
428
Normal
-0.4
715
Tumor
-0.4
213
Tumor
-0.4
271
Tumor
-0.4
211
Tumor
-0.4
514
Normal
-0.4
937
Tumor
-0.5
685
Tumor
-0.5
433
Tumor
-0.5
443
Tumor
-0.5
727
Tumor
-0.5
161
Tumor
-0.5
147
Tumor
-0.5
422
Normal
-0.5
963
Tumor
-0.5
376
Normal
-0.5
814
Normal
-0.5
327
Tumor
-0.5
424
Normal
-0.6
1027
Tumor
-0.6
535
Tumor
-0.6
114
Normal
-0.6
414
Normal
-0.6
171
Tumor
-0.6
365
Tumor
-0.6
917
Tumor
-0.6
813
Tumor
-0.6
366
Normal
-0.6
126
Normal
-0.6
128
Normal
-0.6
368
Normal
-0.6
127
Tumor
-0.7
425
Tumor
-0.7
112
Tumor
-0.8
283
Tumor
-0.8
567
Tumor
-1.0
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.